4.0:Information of module
250uM K-nitrate 20min roots
In comparison with Col-0 0h NAA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010167 response to nitrate BP 1.969e-14
GO:0015706 nitrate transport BP 1.036e-11
GO:1901698 response to nitrogen compound BP 1.083e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006355 regulation of transcription, DNA-templat... BP 2.938e-09
GO:1903506 regulation of nucleic acid-templated tra... BP 2.938e-09
GO:2001141 regulation of RNA biosynthetic process BP 2.938e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
250uM K-nitrate 20min roots		 Log2 signal ratio
Col-0 0h NAA
1 250472_at AT5G10210 unknown 1.018 -0.164
2 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.956 -0.213
3 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.931 -0.147
4 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.902 -0.181
5 260771_at AT1G49160 WNK7 0.900 -0.058
6 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.835 -0.194
7 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.830 -0.231
8 259015_at AT3G07350 unknown 0.825 0.085
9 247768_at AT5G58900 [Homeodomain-like transcriptional regulator] 0.792 -0.135
10 246996_at AT5G67420 ASL39, ASYMMETRIC LEAVES2-LIKE 39, LBD37, LOB domain-containing protein 37 0.792 0.004
11 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] 0.779 -0.223
12 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.772 -0.125
13 260059_at AT1G78090 ATTPPB, Arabidopsis thaliana trehalose-6-phosphate phosphatase B, TPPB, trehalose-6-phosphate phosphatase B 0.744 -0.204
14 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.704 -0.075
15 254027_at AT4G25835 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.691 -0.192
16 246142_at AT5G19970 unknown 0.684 -0.058
17 260623_at AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 0.682 -0.446
18 246981_at AT5G04840 [bZIP protein] 0.632 0.016
19 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.631 -0.032
20 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.619 -0.026
21 252133_at AT3G50900 unknown 0.608 -0.044
22 249188_at AT5G42830 [HXXXD-type acyl-transferase family protein] 0.607 -0.129
23 253408_at AT4G32950 [Protein phosphatase 2C family protein] 0.603 -0.093
24 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.593 -0.030
25 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 0.589 -0.127
26 255041_at AT4G09620 [Mitochondrial transcription termination factor family protein] 0.589 -0.008
27 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] 0.586 -0.239
28 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 0.572 -0.077
29 256799_at AT3G18560 unknown 0.572 -0.047
30 260754_at AT1G49000 unknown 0.571 -0.027
31 245977_at AT5G13110 G6PD2, glucose-6-phosphate dehydrogenase 2 0.559 -0.032
32 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.540 0.041
33 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.537 -0.059
34 262284_at AT1G68670 [myb-like transcription factor family protein] 0.535 0.006
35 246085_at AT5G20540 ATBRXL4, BREVIS RADIX-like 4, BRX-LIKE4, BRXL4, BREVIS RADIX-like 4 0.526 -0.006
36 255479_at AT4G02380 AtLEA5, Arabidopsis thaliana late embryogenensis abundant like 5, SAG21, senescence-associated gene 21 0.516 0.030
37 250463_at AT5G10030 OBF4, OCS ELEMENT BINDING FACTOR 4, TGA4, TGACG motif-binding factor 4 0.513 -0.116
38 262399_at AT1G49500 unknown 0.505 -0.014
39 258437_at AT3G16560 [Protein phosphatase 2C family protein] 0.500 -0.150
40 252220_at AT3G49940 LBD38, LOB domain-containing protein 38 0.491 -0.139
41 261806_at AT1G30510 ATRFNR2, root FNR 2, RFNR2, root FNR 2 0.490 -0.107
42 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.415 0.682
43 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.351 0.048
44 254562_at AT4G19230 CYP707A1, cytochrome P450, family 707, subfamily A, polypeptide 1 -0.330 0.263
45 257163_at AT3G24310 ATMYB71, MYB DOMAIN PROTEIN 71, MYB305, myb domain protein 305 -0.310 0.408
46 245084_at AT2G23290 AtMYB70, myb domain protein 70, MYB70, myb domain protein 70 -0.303 0.069
47 245401_at AT4G17670 unknown -0.288 0.010
48 266011_at AT2G37440 [DNAse I-like superfamily protein] -0.279 0.200
49 254632_at AT4G18630 unknown -0.277 -0.127
50 255511_at AT4G02075 PIT1, pitchoun 1 -0.258 -0.053
51 266257_at AT2G27820 ADT3, arogenate dehydratase 3, PD1, prephenate dehydratase 1 -0.248 -0.175
52 249047_at AT5G44410 [FAD-binding Berberine family protein] -0.245 -0.118
53 257650_at AT3G16800 [Protein phosphatase 2C family protein] -0.244 0.084
54 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.238 0.381
55 254178_at AT4G23880 unknown -0.235 0.223
56 248820_at AT5G47060 unknown -0.232 0.092
57 248132_at AT5G54840 ATSGP1, SGP1 -0.214 0.058
58 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.212 -0.126
59 258178_at AT3G21680 unknown -0.201 0.016
60 249058_at AT5G44510 TAO1, target of AVRB operation1 -0.200 0.043
61 262170_at AT1G74940 unknown -0.194 -0.036
62 261436_at AT1G07870 [Protein kinase superfamily protein] -0.193 0.089
63 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] -0.192 -0.135
64 264990_at AT1G27210 [ARM repeat superfamily protein] -0.189 -0.092
65 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.186 -0.056
66 250378_at AT5G11570 [Major facilitator superfamily protein] -0.184 -0.073
67 260148_at AT1G52800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.176 0.009
68 248708_at AT5G48560 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.174 -0.090
69 262236_at AT1G48330 unknown -0.172 0.063
70 254431_at AT4G20840 [FAD-binding Berberine family protein] -0.172 -0.187
71 259540_at AT1G20640 NLP4, NIN-like protein 4 -0.171 0.018
72 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 -0.169 0.124
73 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -0.167 -0.174
74 246531_at AT5G15800 AGL2, AGAMOUS-like 2, SEP1, SEPALLATA1 -0.167 0.089
75 254922_at AT4G11370 RHA1A, RING-H2 finger A1A -0.166 0.019
76 256759_at AT3G25640 unknown -0.164 0.181
77 266757_at AT2G46940 unknown -0.163 -0.129
78 254631_at AT4G18610 LSH9, LIGHT SENSITIVE HYPOCOTYLS 9 -0.159 -0.137
79 256650_at AT3G13620 PUT4, POLYAMINE UPTAKE TRANSPORTER 4 -0.154 -0.113
80 263931_at AT2G36220 unknown -0.153 0.204
81 258813_at AT3G04060 anac046, NAC domain containing protein 46, NAC046, NAC domain containing protein 46 -0.152 0.057