4.0:Information of module
4h decapitation
In comparison with atmospheric CO2 low Mg shoot help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009165 nucleotide biosynthetic process BP 3.185e-31
GO:1901293 nucleoside phosphate biosynthetic proces... BP 4.482e-31
GO:0009117 nucleotide metabolic process BP 3.504e-27
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048583 regulation of response to stimulus BP 9.207e-17
GO:0031347 regulation of defense response BP 1.024e-14
GO:0080134 regulation of response to stress BP 2.898e-14
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
4h decapitation		 Log2 signal ratio
atmospheric CO2 low Mg shoot
1 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 1.149 -0.306
2 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 1.039 -2.252
3 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.684 -0.524
4 260948_at AT1G06100 [Fatty acid desaturase family protein] 0.608 -0.306
5 256924_at AT3G29590 AT5MAT 0.578 0.602
6 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.561 -0.306
7 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] 0.511 -0.787
8 253073_at AT4G37410 CYP81F4, cytochrome P450, family 81, subfamily F, polypeptide 4 0.491 0.602
9 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 0.490 -0.921
10 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] 0.490 -0.306
11 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] 0.487 3.455
12 262212_at AT1G74890 ARR15, response regulator 15 0.478 -0.342
13 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 0.464 -0.983
14 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 0.451 -2.001
15 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.438 -1.714
16 257724_at AT3G18510 unknown 0.436 2.142
17 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.432 1.020
18 246797_at AT5G26790 unknown 0.428 -0.708
19 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.425 -2.645
20 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] 0.404 -1.099
21 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like 0.391 -2.772
22 251985_at AT3G53220 [Thioredoxin superfamily protein] 0.371 0.905
23 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 0.369 0.296
24 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 0.367 2.719
25 253598_at AT4G30800 [Nucleic acid-binding, OB-fold-like protein] 0.360 1.597
26 251827_at AT3G55120 A11, AtCHI, CFI, CHALCONE FLAVANONE ISOMERASE, CHI, chalcone isomerase, TT5, TRANSPARENT TESTA 5 0.359 -1.925
27 266684_at AT2G19720 rps15ab, ribosomal protein S15A B 0.358 -0.477
28 256065_at AT1G07070 [Ribosomal protein L35Ae family protein] 0.354 0.676
29 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.350 -0.306
30 265730_at AT2G32220 [Ribosomal L27e protein family] 0.349 1.499
31 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.348 -1.140
32 254932_at AT4G11120 [translation elongation factor Ts (EF-Ts), putative] 0.344 1.451
33 245814_at AT1G49910 BUB3.2, BUB (BUDDING UNINHIBITED BY BENZYMIDAZOL) 3.2 0.339 0.750
34 248341_at AT5G52220 unknown 0.331 0.218
35 257813_at AT3G25100 CDC45, cell division cycle 45 0.329 0.063
36 250859_at AT5G04660 CYP77A4, cytochrome P450, family 77, subfamily A, polypeptide 4 0.328 -0.440
37 263677_at AT1G04520 PDLP2, plasmodesmata-located protein 2 0.327 -2.108
38 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.326 1.298
39 256275_at AT3G12110 ACT11, actin-11 0.323 -1.167
40 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.323 0.150
41 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 0.320 -0.843
42 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 0.319 -0.306
43 248061_at AT5G55340 [MBOAT (membrane bound O-acyl transferase) family protein] 0.318 -0.306
44 251483_at AT3G59650 [mitochondrial ribosomal protein L51/S25/CI-B8 family protein] 0.308 1.293
45 246303_at AT3G51870 [Mitochondrial substrate carrier family protein] 0.307 0.580
46 253458_at AT4G32070 Phox4, Phox4 0.305 -0.145
47 260025_at AT1G30070 [SGS domain-containing protein] 0.304 0.196
48 254080_at AT4G25630 ATFIB2, FIB2, fibrillarin 2 0.302 2.773
49 258799_at AT3G04770 RPSAb, 40s ribosomal protein SA B 0.300 0.879
50 245568_at AT4G14650 unknown 0.297 -2.008
51 258532_at AT3G06700 [Ribosomal L29e protein family] 0.291 1.898
52 266384_at AT2G14660 unknown 0.290 -1.506
53 249521_at AT5G38690 [Zinc-finger domain of monoamine-oxidase A repressor R1 protein] 0.289 -0.569
54 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.288 -1.571
55 266358_at AT2G32280 VCC, VASCULATURE COMPLEXITY AND CONNECTIVITY 0.286 -0.306
56 247268_at AT5G64080 AtXYP1, XYP1, xylogen protein 1 0.286 1.461
57 264864_at AT1G24310 unknown 0.285 1.006
58 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.285 0.503
59 260605_at AT2G43780 unknown 0.280 1.246
60 266567_at AT2G24050 eIFiso4G2, eukaryotic translation Initiation Factor isoform 4G2 0.279 0.129
61 257608_at AT3G13860 HSP60-3A, heat shock protein 60-3A 0.279 0.133
62 264623_at AT1G09000 ANP1, NPK1-related protein kinase 1, MAPKKK1, MAP KINASE KINASE KINASE 1, NP1, NPK1-related protein kinase 1 0.274 -0.685
63 265032_at AT1G61580 ARP2, ARABIDOPSIS RIBOSOMAL PROTEIN 2, RPL3B, R-protein L3 B 0.270 1.250
64 263864_at AT2G04530 CPZ, TRZ2, TRNASE Z 2 0.269 0.560
65 258966_at AT3G10690 GYRA, DNA GYRASE A 0.269 0.794
66 250147_at AT5G14600 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.267 0.023
67 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 0.265 -0.306
68 245133_at AT2G45310 GAE4, UDP-D-glucuronate 4-epimerase 4 0.264 0.089
69 259678_at AT1G77750 [Ribosomal protein S13/S18 family] 0.262 0.373
70 261628_at AT1G50000 [methyltransferases] 0.262 0.959
71 266226_at AT2G28740 HIS4, histone H4 0.261 -0.558
72 266074_at AT2G18740 [Small nuclear ribonucleoprotein family protein] 0.259 0.996
73 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.252 -0.476
74 253687_at AT4G29520 [LOCATED IN: endoplasmic reticulum, plasma membrane] 0.252 3.328
75 258034_at AT3G21300 [RNA methyltransferase family protein] 0.251 -0.161
76 256905_at AT3G23990 HSP60, heat shock protein 60, HSP60-3B, HEAT SHOCK PROTEIN 60-3B 0.251 1.092
77 261011_at AT1G26340 ATCB5-A, ARABIDOPSIS CYTOCHROME B5 ISOFORM A, B5 #6, CB5-A, cytochrome B5 isoform A 0.250 0.617
78 265006_at AT1G61570 TIM13, translocase of the inner mitochondrial membrane 13 0.245 2.554
79 252643_at AT3G44590 [60S acidic ribosomal protein family] 0.245 -0.383
80 254878_at AT4G11660 AT-HSFB2B, HSF7, HSFB2B, HEAT SHOCK TRANSCRIPTION FACTOR B2B 0.245 0.144
81 260100_at AT1G73177 APC13, anaphase-promoting complex 13, BNS, BONSAI 0.244 -1.286
82 260714_at AT1G14980 CPN10, chaperonin 10 0.242 0.710
83 255015_at AT4G09980 EMB1691, EMBRYO DEFECTIVE 1691 0.241 -0.136
84 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] 0.240 -1.089
85 257035_at AT3G19270 CYP707A4, cytochrome P450, family 707, subfamily A, polypeptide 4 0.240 0.792
86 248958_at AT5G45590 [Ribosomal protein L35] 0.239 0.078
87 246746_at AT5G27820 [Ribosomal L18p/L5e family protein] 0.238 1.340
88 265595_at AT2G20140 RPT2b, regulatory particle AAA-ATPase 2b 0.237 0.190
89 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.962 0.862
90 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.942 3.033
91 264774_at AT1G22890 unknown -0.870 1.774
92 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI -0.830 1.199
93 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 -0.726 2.887
94 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 -0.630 4.061
95 253322_at AT4G33980 unknown -0.608 1.414
96 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 -0.574 4.277
97 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.547 0.737
98 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.527 1.820
99 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.499 2.237
100 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] -0.482 3.774
101 264405_at AT1G10210 ATMPK1, mitogen-activated protein kinase 1, MPK1, mitogen-activated protein kinase 1 -0.480 2.052
102 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.477 -1.034
103 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.471 2.123
104 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] -0.465 1.840
105 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 -0.454 2.469
106 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.444 1.823
107 262607_at AT1G13990 unknown -0.442 4.221
108 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.433 3.717
109 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 -0.432 2.018
110 261395_at AT1G79700 WRI4, WRINKLED 4 -0.425 1.295
111 253358_at AT4G32940 GAMMA-VPE, gamma vacuolar processing enzyme, GAMMAVPE -0.416 0.652
112 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.414 4.096
113 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 -0.397 0.805
114 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] -0.396 0.470
115 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 -0.390 4.265
116 253776_at AT4G28390 AAC3, ADP/ATP carrier 3, ATAAC3 -0.384 2.275
117 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 -0.378 3.069
118 266072_at AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 -0.378 4.463
119 248193_at AT5G54080 AtHGO, HGO, homogentisate 1,2-dioxygenase -0.367 0.489
120 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 -0.366 1.696
121 251494_at AT3G59350 [Protein kinase superfamily protein] -0.365 0.555
122 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 -0.363 0.845
123 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.360 -0.133
124 250032_at AT5G18170 GDH1, glutamate dehydrogenase 1 -0.357 0.548
125 252976_s_at AT4G38550 [Arabidopsis phospholipase-like protein (PEARLI 4) family] -0.356 0.449
126 255221_at AT4G05150 [Octicosapeptide/Phox/Bem1p family protein] -0.353 1.556
127 253414_at AT4G33050 AtIQM1, EDA39, embryo sac development arrest 39, IQM1, IQ-motif protein 1 -0.352 0.214
128 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 -0.349 4.208
129 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 -0.348 3.104
130 247835_at AT5G57910 unknown -0.343 0.814
131 247374_at AT5G63190 [MA3 domain-containing protein] -0.343 0.996
132 260303_at AT1G70520 ASG6, ALTERED SEED GERMINATION 6, CRK2, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 -0.333 1.905
133 260772_at AT1G49050 [Eukaryotic aspartyl protease family protein] -0.333 1.717
134 247793_at AT5G58650 PSY1, plant peptide containing sulfated tyrosine 1 -0.332 0.169
135 248487_at AT5G51070 CLPD, ERD1, EARLY RESPONSIVE TO DEHYDRATION 1, SAG15, SENESCENCE ASSOCIATED GENE 15 -0.329 0.671
136 247819_at AT5G58350 WNK4, with no lysine (K) kinase 4, ZIK2 -0.326 0.388
137 262495_at AT1G21780 [BTB/POZ domain-containing protein] -0.326 1.128
138 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 -0.325 -0.760
139 263478_at AT2G31880 EVR, EVERSHED, SOBIR1, SUPPRESSOR OF BIR1 1 -0.323 3.104
140 247474_at AT5G62280 unknown -0.322 3.686
141 253997_at AT4G26090 RPS2, RESISTANT TO P. SYRINGAE 2 -0.322 2.196
142 247295_at AT5G64180 unknown -0.317 0.441
143 255742_at AT1G25560 AtTEM1, EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 -0.307 0.171
144 248004_at AT5G56230 PRA1.G2, prenylated RAB acceptor 1.G2 -0.307 1.719
145 263804_at AT2G40270 [Protein kinase family protein] -0.300 0.985
146 246305_at AT3G51890 CLC3, clathrin light chain 3 -0.298 2.340
147 252323_at AT3G48530 KING1, SNF1-related protein kinase regulatory subunit gamma 1 -0.298 1.610
148 246028_at AT5G21170 5'-AMP-activated protein kinase beta-2 subunit protein -0.296 1.841
149 255452_at AT4G02880 unknown -0.294 1.015
150 247211_at AT5G64880 unknown -0.293 1.136
151 253672_at AT4G29820 ATCFIM-25, ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, CFIM-25, homolog of CFIM-25 -0.292 0.960
152 247140_at AT5G66250 [kinectin-related] -0.288 1.448
153 264362_at AT1G03290 unknown -0.287 1.737
154 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] -0.287 0.511
155 264828_at AT1G03380 ATATG18G, homolog of yeast autophagy 18 (ATG18) G, ATG18G, homolog of yeast autophagy 18 (ATG18) G -0.287 0.073
156 255429_at AT4G03410 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] -0.287 0.009
157 250822_at AT5G05230 [RING/U-box superfamily protein] -0.285 0.780
158 246782_at AT5G27320 ATGID1C, GID1C, GA INSENSITIVE DWARF1C -0.281 1.365
159 256727_at AT3G52240 unknown -0.278 1.741
160 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 -0.276 1.403
161 247585_at AT5G60680 unknown -0.275 1.336
162 260878_at AT1G21450 SCL1, SCARECROW-like 1 -0.275 0.196
163 258256_at AT3G26890 unknown -0.273 0.411
164 262804_at AT1G20880 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.273 -0.203
165 263046_at AT2G05380 GRP3S, glycine-rich protein 3 short isoform -0.271 5.467
166 249999_at AT5G18640 [alpha/beta-Hydrolases superfamily protein] -0.269 1.144
167 266428_at AT2G07180 [Protein kinase superfamily protein] -0.267 1.711
168 253401_at AT4G32870 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.266 0.345
169 260498_at AT2G41710 [Integrase-type DNA-binding superfamily protein] -0.266 0.343
170 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 -0.264 0.590
171 254547_at AT4G19860 [alpha/beta-Hydrolases superfamily protein] -0.264 1.665
172 248032_at AT5G55860 unknown -0.263 0.952
173 252927_at AT4G39090 RD19, RESPONSIVE TO DEHYDRATION 19, RD19A, RESPONSIVE TO DEHYDRATION 19A -0.263 2.608
174 246462_at AT5G16940 [carbon-sulfur lyases] -0.263 -0.451
175 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] -0.262 0.247