4.0:Information of module
Cd 18h root
In comparison with Dark 2day wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010035 response to inorganic substance BP 8.503e-21
GO:0042542 response to hydrogen peroxide BP 1.837e-17
GO:1901700 response to oxygen-containing compound BP 4.775e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 4.753e-12
GO:0048511 rhythmic process BP 4.753e-12
GO:1901700 response to oxygen-containing compound BP 2.186e-11
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Cd 18h root		 Log2 signal ratio
Dark 2day wt
1 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 1.011 -5.352
2 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.924 -3.799
3 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 0.869 -2.713
4 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 0.860 0.657
5 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.858 -3.832
6 261684_at AT1G47400 unknown 0.770 -4.802
7 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 0.746 -3.627
8 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 0.723 -2.288
9 264635_at AT1G65500 unknown 0.652 0.578
10 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.648 -0.301
11 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.643 -4.493
12 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.637 -0.552
13 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 0.629 0.611
14 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.626 -0.020
15 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.621 0.259
16 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 0.610 -2.729
17 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.578 -1.866
18 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.546 -2.645
19 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.518 -1.807
20 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.514 -5.486
21 265569_at AT2G05620 AtPGR5, PGR5, proton gradient regulation 5 0.503 -1.948
22 246229_at AT4G37160 sks15, SKU5 similar 15 0.497 -0.020
23 246967_at AT5G24860 ATFPF1, ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, FPF1, FLOWERING PROMOTING FACTOR 1 0.496 1.669
24 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.495 -4.095
25 263374_at AT2G20560 [DNAJ heat shock family protein] 0.486 0.922
26 254839_at AT4G12400 Hop3, Hop3 0.481 -0.132
27 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.476 -1.811
28 250243_at AT5G13630 ABAR, ABA-BINDING PROTEIN, CCH, CONDITIONAL CHLORINA, CCH1, CHLH, H SUBUNIT OF MG-CHELATASE, GUN5, GENOMES UNCOUPLED 5 0.473 -5.308
29 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.472 -1.612
30 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C 0.467 2.159
31 251727_at AT3G56290 unknown 0.466 -5.471
32 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] 0.466 -0.020
33 247232_at AT5G64940 ATATH13, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ATH13, ABC2 homolog 13, ATOSA1, A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, OSA1, OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1 0.458 -3.367
34 252929_at AT4G38970 AtFBA2, FBA2, fructose-bisphosphate aldolase 2 0.453 -4.744
35 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 0.449 -0.020
36 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.449 -1.776
37 248356_at AT5G52350 ATEXO70A3, exocyst subunit exo70 family protein A3, EXO70A3, exocyst subunit exo70 family protein A3 0.448 -0.020
38 266672_at AT2G29650 ANTR1, anion transporter 1, PHT4;1, phosphate transporter 4;1 0.445 -3.800
39 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.440 -2.089
40 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 0.430 -0.557
41 260248_at AT1G74310 ATHSP101, heat shock protein 101, HOT1, HSP101, heat shock protein 101 0.429 -1.261
42 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.420 -1.415
43 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.410 -0.020
44 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.410 -0.020
45 246228_at AT4G36430 [Peroxidase superfamily protein] 0.390 -3.617
46 248160_at AT5G54470 BBX29, B-box domain protein 29 0.384 -0.179
47 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.381 -0.020
48 257650_at AT3G16800 [Protein phosphatase 2C family protein] 0.373 -0.614
49 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] 0.367 -0.551
50 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 0.366 -1.917
51 255011_at AT4G10040 CYTC-2, cytochrome c-2 0.365 -1.994
52 266108_at AT2G37900 [Major facilitator superfamily protein] 0.362 0.948
53 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 0.361 -4.357
54 260014_at AT1G68010 ATHPR1, HPR, hydroxypyruvate reductase 0.361 -0.892
55 257129_at AT3G20100 CYP705A19, cytochrome P450, family 705, subfamily A, polypeptide 19 0.359 0.071
56 245558_at AT4G15430 [ERD (early-responsive to dehydration stress) family protein] 0.357 -4.156
57 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 0.356 0.171
58 262743_at AT1G29020 [Calcium-binding EF-hand family protein] 0.354 -0.020
59 252594_at AT3G45680 [Major facilitator superfamily protein] 0.351 -1.334
60 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 0.351 -3.657
61 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] 0.340 -0.020
62 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 0.338 -6.220
63 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.337 -1.735
64 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 0.327 -0.020
65 261690_at AT1G50090 AtBCAT7, BCAT7, branched-chain amino acid transaminase 7 0.327 -0.020
66 247452_at AT5G62430 CDF1, cycling DOF factor 1 0.325 -1.463
67 260481_at AT1G10960 ATFD1, ferredoxin 1, FD1, ferredoxin 1 0.324 -3.499
68 255105_at AT4G08620 SULTR1;1, sulphate transporter 1;1 0.323 -0.020
69 260025_at AT1G30070 [SGS domain-containing protein] 0.322 0.245
70 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 0.322 -1.971
71 261133_at AT1G19715 [Mannose-binding lectin superfamily protein] 0.321 -0.453
72 257252_at AT3G24170 ATGR1, glutathione-disulfide reductase, GR1, glutathione-disulfide reductase 0.320 -1.965
73 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.317 -2.644
74 248619_at AT5G49630 AAP6, amino acid permease 6 0.317 -2.547
75 255814_at AT1G19900 [glyoxal oxidase-related protein] 0.315 -0.020
76 259150_at AT3G10320 [Glycosyltransferase family 61 protein] 0.307 5.705
77 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -1.071 -0.794
78 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 -0.963 -0.020
79 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.932 5.704
80 249174_at AT5G42900 COR27, cold regulated gene 27 -0.917 3.772
81 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 -0.894 4.905
82 253322_at AT4G33980 unknown -0.843 10.571
83 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 -0.797 5.496
84 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 -0.732 5.577
85 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 -0.687 4.326
86 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.672 2.823
87 264774_at AT1G22890 unknown -0.665 1.006
88 249459_at AT5G39580 [Peroxidase superfamily protein] -0.650 4.070
89 248744_at AT5G48250 BBX8, B-box domain protein 8 -0.647 4.253
90 267382_at AT2G44300 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.630 -1.923
91 262452_at AT1G11210 unknown -0.614 7.127
92 245546_at AT4G15290 ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05 -0.606 -0.020
93 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 -0.594 3.937
94 252924_at AT4G39070 BBX20, B-box domain protein 20, BZS1, BZS1 -0.588 3.517
95 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.577 4.834
96 256746_at AT3G29320 PHS1, alpha-glucan phosphorylase 1 -0.572 -0.259
97 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -0.565 7.464
98 254001_at AT4G26260 MIOX4, myo-inositol oxygenase 4 -0.553 3.782
99 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.551 -6.106
100 257670_at AT3G20340 unknown -0.549 8.211
101 246703_at AT5G28080 WNK9 -0.546 2.015
102 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase -0.542 3.164
103 264425_at AT1G61750 [Receptor-like protein kinase-related family protein] -0.520 3.746
104 263556_at AT2G16365 [F-box family protein] -0.486 -0.733
105 259316_at AT3G01175 unknown -0.480 3.449
106 259595_at AT1G28050 BBX13, B-box domain protein 13 -0.461 4.054
107 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] -0.457 1.543
108 248148_at AT5G54930 [AT hook motif-containing protein] -0.453 1.807
109 250194_at AT5G14550 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.438 0.981
110 247582_at AT5G60760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.434 -0.551
111 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 -0.431 1.121
112 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 -0.431 5.436
113 249742_at AT5G24490 [30S ribosomal protein, putative] -0.431 -0.035
114 251996_at AT3G52840 BGAL2, beta-galactosidase 2 -0.417 -0.346
115 252357_at AT3G48410 [alpha/beta-Hydrolases superfamily protein] -0.401 1.851
116 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.399 2.594
117 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 -0.398 4.881
118 248382_at AT5G51890 [Peroxidase superfamily protein] -0.394 -3.641
119 260412_at AT1G69830 AMY3, alpha-amylase-like 3, ATAMY3, ALPHA-AMYLASE-LIKE 3 -0.392 0.239
120 263919_at AT2G36470 unknown -0.386 1.831
121 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 -0.384 5.201
122 265560_at AT2G05520 ATGRP-3, GLYCINE-RICH PROTEIN 3, ATGRP3, ARABIDOPSIS GLYCINE RICH PROTEIN 3, GRP-3, glycine-rich protein 3, GRP3, GLYCINE-RICH PROTEIN 3 -0.380 1.252
123 264597_at AT1G04620 HCAR, 7-hydroxymethyl chlorophyll a (HMChl) reductase -0.379 2.027
124 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.366 1.828
125 251132_at AT5G01200 [Duplicated homeodomain-like superfamily protein] -0.362 2.603
126 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] -0.362 2.443
127 245353_at AT4G16000 unknown -0.362 1.320
128 259363_at AT1G13270 MAP1B, METHIONINE AMINOPEPTIDASE 1B, MAP1C, methionine aminopeptidase 1B -0.352 -0.406
129 253215_at AT4G34950 [Major facilitator superfamily protein] -0.344 -2.065
130 253614_at AT4G30350 SMXL2, SMAX1-like 2 -0.342 0.810
131 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.337 -0.074
132 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.336 -1.152
133 248969_at AT5G45310 unknown -0.335 4.178
134 247013_at AT5G67480 ATBT4, BT4, BTB and TAZ domain protein 4 -0.333 3.777
135 252468_at AT3G46970 ATPHS2, Arabidopsis thaliana alpha-glucan phosphorylase 2, PHS2, alpha-glucan phosphorylase 2 -0.332 -0.871
136 263737_at AT1G60010 unknown -0.328 0.998
137 255252_at AT4G04990 unknown -0.328 -0.020
138 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 -0.326 5.393
139 264204_at AT1G22710 ATSUC2, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, SUC2, sucrose-proton symporter 2, SUT1, SUCROSE TRANSPORTER 1 -0.326 -0.904
140 257154_at AT3G27210 unknown -0.326 3.784
141 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.324 8.025
142 265131_at AT1G23760 JP630, PG3, POLYGALACTURONASE 3 -0.323 -0.272
143 260024_at AT1G30080 [Glycosyl hydrolase superfamily protein] -0.322 -0.020
144 255070_at AT4G09020 ATISA3, ISA3, isoamylase 3 -0.321 1.405
145 253237_at AT4G34240 ALDH3, aldehyde dehydrogenase 3, ALDH3I1, aldehyde dehydrogenase 3I1 -0.318 -1.762
146 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 -0.317 2.921
147 263548_at AT2G21660 ATGRP7, GLYCINE RICH PROTEIN 7, CCR2, cold, circadian rhythm, and rna binding 2, GR-RBP7, GLYCINE-RICH RNA-BINDING PROTEIN 7, GRP7, GLYCINE-RICH RNA-BINDING PROTEIN 7 -0.316 5.277
148 266358_at AT2G32280 VCC, VASCULATURE COMPLEXITY AND CONNECTIVITY -0.315 -1.251
149 251494_at AT3G59350 [Protein kinase superfamily protein] -0.314 2.255
150 259977_at AT1G76590 [PLATZ transcription factor family protein] -0.314 6.464
151 247882_at AT5G57785 unknown -0.313 1.141