4.0:Information of module
Cd 18h root
In comparison with root epidermis and lateral root cap 40 mM NaCl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010035 response to inorganic substance BP 8.503e-21
GO:0042542 response to hydrogen peroxide BP 1.837e-17
GO:1901700 response to oxygen-containing compound BP 4.775e-17
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 4.753e-12
GO:0048511 rhythmic process BP 4.753e-12
GO:1901700 response to oxygen-containing compound BP 2.186e-11
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Cd 18h root		 Log2 signal ratio
root epidermis and lateral root cap 40 mM NaCl
1 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 1.011 -0.645
2 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.924 -0.399
3 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 0.869 -0.470
4 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 0.860 0.040
5 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.858 -0.074
6 261684_at AT1G47400 unknown 0.770 -0.091
7 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 0.746 0.200
8 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 0.723 -0.344
9 264635_at AT1G65500 unknown 0.652 0.053
10 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.648 -0.223
11 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.643 0.547
12 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.637 -0.071
13 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 0.629 0.016
14 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.626 0.044
15 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.621 0.043
16 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 0.610 0.026
17 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.578 -0.008
18 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.546 0.499
19 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.518 -0.569
20 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.514 0.034
21 265569_at AT2G05620 AtPGR5, PGR5, proton gradient regulation 5 0.503 -0.183
22 246229_at AT4G37160 sks15, SKU5 similar 15 0.497 -0.102
23 246967_at AT5G24860 ATFPF1, ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, FPF1, FLOWERING PROMOTING FACTOR 1 0.496 -0.012
24 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.495 0.111
25 263374_at AT2G20560 [DNAJ heat shock family protein] 0.486 -0.068
26 254839_at AT4G12400 Hop3, Hop3 0.481 -0.219
27 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.476 0.197
28 250243_at AT5G13630 ABAR, ABA-BINDING PROTEIN, CCH, CONDITIONAL CHLORINA, CCH1, CHLH, H SUBUNIT OF MG-CHELATASE, GUN5, GENOMES UNCOUPLED 5 0.473 0.075
29 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.472 -0.382
30 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C 0.467 -0.243
31 251727_at AT3G56290 unknown 0.466 -0.357
32 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] 0.466 -0.013
33 247232_at AT5G64940 ATATH13, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ATH13, ABC2 homolog 13, ATOSA1, A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, OSA1, OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1 0.458 -0.198
34 252929_at AT4G38970 AtFBA2, FBA2, fructose-bisphosphate aldolase 2 0.453 -0.034
35 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 0.449 -0.434
36 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.449 0.080
37 248356_at AT5G52350 ATEXO70A3, exocyst subunit exo70 family protein A3, EXO70A3, exocyst subunit exo70 family protein A3 0.448 -0.026
38 266672_at AT2G29650 ANTR1, anion transporter 1, PHT4;1, phosphate transporter 4;1 0.445 -0.104
39 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.440 -0.121
40 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 0.430 -0.070
41 260248_at AT1G74310 ATHSP101, heat shock protein 101, HOT1, HSP101, heat shock protein 101 0.429 0.117
42 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.420 -0.019
43 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.410 0.018
44 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.410 -0.595
45 246228_at AT4G36430 [Peroxidase superfamily protein] 0.390 0.002
46 248160_at AT5G54470 BBX29, B-box domain protein 29 0.384 0.014
47 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.381 -0.362
48 257650_at AT3G16800 [Protein phosphatase 2C family protein] 0.373 0.522
49 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] 0.367 0.016
50 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 0.366 0.269
51 255011_at AT4G10040 CYTC-2, cytochrome c-2 0.365 -0.183
52 266108_at AT2G37900 [Major facilitator superfamily protein] 0.362 -0.026
53 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 0.361 0.076
54 260014_at AT1G68010 ATHPR1, HPR, hydroxypyruvate reductase 0.361 0.003
55 257129_at AT3G20100 CYP705A19, cytochrome P450, family 705, subfamily A, polypeptide 19 0.359 0.118
56 245558_at AT4G15430 [ERD (early-responsive to dehydration stress) family protein] 0.357 0.065
57 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 0.356 0.072
58 262743_at AT1G29020 [Calcium-binding EF-hand family protein] 0.354 -0.138
59 252594_at AT3G45680 [Major facilitator superfamily protein] 0.351 0.023
60 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 0.351 -0.381
61 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] 0.340 0.175
62 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 0.338 -0.030
63 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.337 -0.128
64 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 0.327 -0.554
65 261690_at AT1G50090 AtBCAT7, BCAT7, branched-chain amino acid transaminase 7 0.327 0.163
66 247452_at AT5G62430 CDF1, cycling DOF factor 1 0.325 0.087
67 260481_at AT1G10960 ATFD1, ferredoxin 1, FD1, ferredoxin 1 0.324 -0.112
68 255105_at AT4G08620 SULTR1;1, sulphate transporter 1;1 0.323 -0.020
69 260025_at AT1G30070 [SGS domain-containing protein] 0.322 -0.302
70 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 0.322 0.151
71 261133_at AT1G19715 [Mannose-binding lectin superfamily protein] 0.321 0.102
72 257252_at AT3G24170 ATGR1, glutathione-disulfide reductase, GR1, glutathione-disulfide reductase 0.320 -0.033
73 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.317 0.304
74 248619_at AT5G49630 AAP6, amino acid permease 6 0.317 0.003
75 255814_at AT1G19900 [glyoxal oxidase-related protein] 0.315 -0.193
76 259150_at AT3G10320 [Glycosyltransferase family 61 protein] 0.307 0.366
77 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -1.071 0.130
78 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 -0.963 0.023
79 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.932 0.143
80 249174_at AT5G42900 COR27, cold regulated gene 27 -0.917 0.656
81 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 -0.894 0.451
82 253322_at AT4G33980 unknown -0.843 0.883
83 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 -0.797 0.667
84 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 -0.732 -0.090
85 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 -0.687 0.559
86 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.672 -0.085
87 264774_at AT1G22890 unknown -0.665 -0.023
88 249459_at AT5G39580 [Peroxidase superfamily protein] -0.650 0.451
89 248744_at AT5G48250 BBX8, B-box domain protein 8 -0.647 0.386
90 267382_at AT2G44300 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.630 0.238
91 262452_at AT1G11210 unknown -0.614 0.686
92 245546_at AT4G15290 ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05 -0.606 0.244
93 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 -0.594 0.652
94 252924_at AT4G39070 BBX20, B-box domain protein 20, BZS1, BZS1 -0.588 0.025
95 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.577 0.033
96 256746_at AT3G29320 PHS1, alpha-glucan phosphorylase 1 -0.572 0.104
97 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -0.565 0.547
98 254001_at AT4G26260 MIOX4, myo-inositol oxygenase 4 -0.553 0.039
99 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.551 0.361
100 257670_at AT3G20340 unknown -0.549 0.523
101 246703_at AT5G28080 WNK9 -0.546 0.033
102 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase -0.542 0.085
103 264425_at AT1G61750 [Receptor-like protein kinase-related family protein] -0.520 0.068
104 263556_at AT2G16365 [F-box family protein] -0.486 0.228
105 259316_at AT3G01175 unknown -0.480 -0.008
106 259595_at AT1G28050 BBX13, B-box domain protein 13 -0.461 0.221
107 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] -0.457 0.668
108 248148_at AT5G54930 [AT hook motif-containing protein] -0.453 0.388
109 250194_at AT5G14550 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.438 -0.018
110 247582_at AT5G60760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.434 0.005
111 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 -0.431 0.464
112 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 -0.431 0.262
113 249742_at AT5G24490 [30S ribosomal protein, putative] -0.431 0.456
114 251996_at AT3G52840 BGAL2, beta-galactosidase 2 -0.417 0.054
115 252357_at AT3G48410 [alpha/beta-Hydrolases superfamily protein] -0.401 0.117
116 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.399 0.439
117 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 -0.398 0.143
118 248382_at AT5G51890 [Peroxidase superfamily protein] -0.394 -0.067
119 260412_at AT1G69830 AMY3, alpha-amylase-like 3, ATAMY3, ALPHA-AMYLASE-LIKE 3 -0.392 0.265
120 263919_at AT2G36470 unknown -0.386 -0.127
121 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 -0.384 0.077
122 265560_at AT2G05520 ATGRP-3, GLYCINE-RICH PROTEIN 3, ATGRP3, ARABIDOPSIS GLYCINE RICH PROTEIN 3, GRP-3, glycine-rich protein 3, GRP3, GLYCINE-RICH PROTEIN 3 -0.380 -0.050
123 264597_at AT1G04620 HCAR, 7-hydroxymethyl chlorophyll a (HMChl) reductase -0.379 -0.094
124 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.366 -0.064
125 251132_at AT5G01200 [Duplicated homeodomain-like superfamily protein] -0.362 0.199
126 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] -0.362 -0.029
127 245353_at AT4G16000 unknown -0.362 -0.130
128 259363_at AT1G13270 MAP1B, METHIONINE AMINOPEPTIDASE 1B, MAP1C, methionine aminopeptidase 1B -0.352 0.146
129 253215_at AT4G34950 [Major facilitator superfamily protein] -0.344 0.368
130 253614_at AT4G30350 SMXL2, SMAX1-like 2 -0.342 0.241
131 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.337 0.051
132 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.336 0.425
133 248969_at AT5G45310 unknown -0.335 0.135
134 247013_at AT5G67480 ATBT4, BT4, BTB and TAZ domain protein 4 -0.333 0.206
135 252468_at AT3G46970 ATPHS2, Arabidopsis thaliana alpha-glucan phosphorylase 2, PHS2, alpha-glucan phosphorylase 2 -0.332 0.268
136 263737_at AT1G60010 unknown -0.328 0.063
137 255252_at AT4G04990 unknown -0.328 0.091
138 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 -0.326 0.352
139 264204_at AT1G22710 ATSUC2, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, SUC2, sucrose-proton symporter 2, SUT1, SUCROSE TRANSPORTER 1 -0.326 0.479
140 257154_at AT3G27210 unknown -0.326 0.104
141 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.324 0.028
142 265131_at AT1G23760 JP630, PG3, POLYGALACTURONASE 3 -0.323 0.242
143 260024_at AT1G30080 [Glycosyl hydrolase superfamily protein] -0.322 -0.001
144 255070_at AT4G09020 ATISA3, ISA3, isoamylase 3 -0.321 0.254
145 253237_at AT4G34240 ALDH3, aldehyde dehydrogenase 3, ALDH3I1, aldehyde dehydrogenase 3I1 -0.318 -0.052
146 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 -0.317 0.126
147 263548_at AT2G21660 ATGRP7, GLYCINE RICH PROTEIN 7, CCR2, cold, circadian rhythm, and rna binding 2, GR-RBP7, GLYCINE-RICH RNA-BINDING PROTEIN 7, GRP7, GLYCINE-RICH RNA-BINDING PROTEIN 7 -0.316 -0.012
148 266358_at AT2G32280 VCC, VASCULATURE COMPLEXITY AND CONNECTIVITY -0.315 0.046
149 251494_at AT3G59350 [Protein kinase superfamily protein] -0.314 0.208
150 259977_at AT1G76590 [PLATZ transcription factor family protein] -0.314 0.363
151 247882_at AT5G57785 unknown -0.313 0.130