4.0:Information of module
atm3
In comparison with protoplasts T2 [flg22] help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042545 cell wall modification BP 1.260e-05
GO:0009827 plant-type cell wall modification BP 1.766e-04
GO:0009664 plant-type cell wall organization BP 3.198e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006302 double-strand break repair BP 2.400e-15
GO:0010212 response to ionizing radiation BP 1.142e-12
GO:0006281 DNA repair BP 3.560e-12
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
atm3		 Log2 signal ratio
protoplasts T2 [flg22]
1 262736_at AT1G28570 [SGNH hydrolase-type esterase superfamily protein] 0.169 0.097
2 245053_at AT2G26450 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.159 0.079
3 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.138 -0.126
4 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.135 -0.081
5 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 0.129 -0.145
6 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.127 -0.368
7 261184_at AT1G34545 [copia-like retrotransposon family, has a 3.0e-112 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)] 0.118 0.093
8 260933_at AT1G02470 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.107 -0.168
9 265831_at AT2G14460 unknown 0.106 0.086
10 250497_at AT5G09630 [LisH/CRA/RING-U-box domains-containing protein] 0.103 -0.026
11 251366_at AT3G61340 [F-box and associated interaction domains-containing protein] 0.102 0.000
12 251806_at AT3G55370 OBP3, OBF-binding protein 3 0.100 -0.017
13 244994_at ATCG01010 NDHF 0.098 0.141
14 251718_at AT3G56100 IMK3, MRLK, meristematic receptor-like kinase 0.098 -0.035
15 249907_at AT5G22750 RAD5, RAD5A 0.096 0.034
16 266686_at AT2G19700 unknown 0.096 -0.017
17 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.095 0.059
18 253413_at AT4G33020 ATZIP9, ZIP9 0.095 0.117
19 262404_at AT1G34660 [CACTA-like transposase family (En/Spm), has a 1.1e-114 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)] 0.094 -0.018
20 260193_at AT1G67640 [Transmembrane amino acid transporter family protein] 0.094 -0.061
21 258631_at AT3G07970 QRT2, QUARTET 2 0.094 -0.183
22 251785_at AT3G55130 ABCG19, ATP-binding cassette G19, ATWBC19, white-brown complex homolog 19, WBC19, white-brown complex homolog 19 0.093 -0.069
23 249211_at AT5G42680 unknown 0.092 0.128
24 253884_at AT4G27670 HSP21, heat shock protein 21 0.091 -0.074
25 255218_at AT4G07700 [gypsy-like retrotransposon family (Athila), has a 3.9e-13 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 0.090 -0.019
26 265038_at AT1G03920 [Protein kinase family protein] 0.090 -0.038
27 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 0.082 0.413
28 250388_at AT5G11310 [Pentatricopeptide repeat (PPR) superfamily protein] 0.082 0.089
29 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 -1.088 -1.044
30 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase -1.008 -0.741
31 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 -0.932 -0.444
32 249326_at AT5G40840 AtRAD21.1, Sister chromatid cohesion 1 (SCC1) protein homolog 2, SYN2 -0.915 -0.355
33 250914_at AT5G03780 TRFL10, TRF-like 10 -0.899 -0.763
34 254565_at AT4G19130 [Replication factor-A protein 1-related] -0.752 -0.340
35 246132_at AT5G20850 ATRAD51, RAD51 -0.731 -0.829
36 252770_at AT3G42860 [zinc knuckle (CCHC-type) family protein] -0.682 -0.386
37 245137_at AT2G45460 [SMAD/FHA domain-containing protein ] -0.677 -0.519
38 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 -0.627 -0.895
39 255872_at AT2G30360 CIPK11, CBL-INTERACTING PROTEIN KINASE 11, PKS5, PROTEIN KINASE SOS2-LIKE 5, SIP4, SOS3-interacting protein 4, SNRK3.22, SNF1-RELATED PROTEIN KINASE 3.22 -0.597 -0.256
40 261086_at AT1G17460 TRFL3, TRF-like 3 -0.587 -0.391
41 249809_at AT5G23910 [ATP binding microtubule motor family protein] -0.580 -0.350
42 262124_at AT1G59660 [Nucleoporin autopeptidase] -0.551 -0.235
43 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a -0.540 -0.112
44 252539_at AT3G45730 unknown -0.539 0.078
45 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 -0.531 -0.822
46 258476_at AT3G02400 [SMAD/FHA domain-containing protein ] -0.517 0.152
47 253240_at AT4G34510 KCS17, 3-ketoacyl-CoA synthase 17 -0.498 -0.104
48 262548_at AT1G31280 AGO2, argonaute 2, AtAGO2 -0.493 -0.098
49 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 -0.486 -0.766
50 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] -0.482 -0.827
51 261031_at AT1G17360 unknown -0.453 -0.292
52 245233_at AT4G25580 [CAP160 protein] -0.451 0.034
53 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 -0.439 -0.040
54 247081_at AT5G66130 ATRAD17, RADIATION SENSITIVE 17, RAD17, RADIATION SENSITIVE 17 -0.431 -0.275
55 253157_at AT4G35740 ATRECQ3, A. THALIANA RECQ HELICASE 3, RecQl3 -0.429 -0.255