4.0:Information of module
phyB mutant 22C 4hrs
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009314 response to radiation BP 6.773e-06
GO:0009416 response to light stimulus BP 1.675e-05
GO:0010033 response to organic substance BP 1.921e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0045596 negative regulation of cell differentiat... BP 2.563e-03
GO:0010074 maintenance of meristem identity BP 7.892e-03
GO:0009646 response to absence of light BP 9.068e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
phyB mutant 22C 4hrs		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 0.800 -0.202
2 246380_at AT1G57750 CYP96A15, cytochrome P450, family 96, subfamily A, polypeptide 15, MAH1, MID-CHAIN ALKANE HYDROXYLASE 1 0.422 0.185
3 254574_at AT4G19430 unknown 0.332 -1.241
4 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 0.272 -0.464
5 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 0.260 0.085
6 257129_at AT3G20100 CYP705A19, cytochrome P450, family 705, subfamily A, polypeptide 19 0.247 0.191
7 247882_at AT5G57785 unknown 0.233 0.028
8 258859_at AT3G02120 [hydroxyproline-rich glycoprotein family protein] 0.202 -0.238
9 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 0.197 0.846
10 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.190 -0.275
11 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 0.187 -0.982
12 253479_at AT4G32360 [Pyridine nucleotide-disulphide oxidoreductase family protein] 0.178 -0.017
13 258560_at AT3G06020 FAF4, FANTASTIC FOUR 4 0.162 -0.183
14 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 0.157 1.062
15 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 0.153 -0.147
16 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 0.147 -0.389
17 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.146 0.110
18 257017_at AT3G19620 [Glycosyl hydrolase family protein] 0.146 0.118
19 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.146 1.750
20 252345_at AT3G48640 unknown -0.427 -0.810
21 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 -0.385 1.050
22 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.309 -0.498
23 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 -0.290 -1.197
24 267166_at AT2G37720 TBL15, TRICHOME BIREFRINGENCE-LIKE 15 -0.233 -0.908
25 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.230 0.084
26 245567_at AT4G14630 GLP9, germin-like protein 9 -0.211 -0.722
27 259629_at AT1G56510 ADR2, ACTIVATED DISEASE RESISTANCE 2, WRR4, WHITE RUST RESISTANCE 4 -0.209 -1.090
28 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.195 -0.905
29 245240_at AT1G44510 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.191 -0.127
30 245569_at AT4G14660 NRPE7 -0.176 0.433
31 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.172 -0.046
32 259084_at AT3G04800 ATTIM23-3, translocase inner membrane subunit 23-3, TIM23-3, translocase inner membrane subunit 23-3 -0.166 0.681
33 258088_at AT3G14580 [Pentatricopeptide repeat (PPR) superfamily protein] -0.164 -0.402
34 265075_at AT1G55450 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.164 -0.074
35 266853_at AT2G26790 [Pentatricopeptide repeat (PPR) superfamily protein] -0.161 -0.375
36 250113_at AT5G16320 FRL1, FRIGIDA like 1 -0.158 -0.371
37 264785_at AT2G17910 [non-LTR retrotransposon family (LINE), has a 1.8e-42 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)] -0.153 -0.438