phyB mutant 22C 4hrs |
GOID/Term | Ontology | p-value | Genes |
---|---|---|---|
GO:0045596 negative regulation of cell differentiat... | BP | 2.563e-03 | AT4G28200 CCS52A2 ATNUP160 HDG2 |
GO:0010074 maintenance of meristem identity | BP | 7.892e-03 | AT4G28200 CCS52A2 ATNUP160 |
GO:0009646 response to absence of light | BP | 9.068e-03 | XBAT34 ATBCB ATCAL4 |
GO:0051704 multi-organism process | BP | 9.836e-03 | ARD XBAT34 ATBCB ATCAX3 AT5G57060 AT5G52020 AT5G46770 KAPP ATMYB33 AT5G01650 ATATG6 GIG1 NodGS AT3G48640 AT4G36010 ARO1 AT4G28200 AT4G26470 CRK5 UNE15 AtNUDT7 CCS52A2 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ADR2 ATLOX3 ATCNGC8 ACA1 EXL6 ATNUDT6 AT2G44920 ATWRKY25 AT2G19130 |
GO:0019827 stem cell maintenance | BP | 1.475e-02 | AT4G28200 CCS52A2 ATNUP160 |
GO:0048864 stem cell development | BP | 1.642e-02 | AT4G28200 CCS52A2 ATNUP160 |
GO:0050832 defense response to fungus | BP | 1.720e-02 | XBAT34 ATBCB AT5G52020 ATATG6 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ADR2 ATNUDT6 |
GO:0042274 ribosomal small subunit biogenesis | BP | 1.751e-02 | AT3G02560 AP40 |
GO:0055069 zinc ion homeostasis | BP | 1.751e-02 | ATCAX3 ACA1 |
GO:0071483 cellular response to blue light | BP | 1.751e-02 | HRB1 ATSIG6 |
GO:0006403 RNA localization | BP | 1.820e-02 | AT4G28200 ATNUP160 AP40 |
GO:0006405 RNA export from nucleus | BP | 1.820e-02 | AT4G28200 ATNUP160 AP40 |
GO:0048863 stem cell differentiation | BP | 1.820e-02 | AT4G28200 CCS52A2 ATNUP160 |
GO:0050657 nucleic acid transport | BP | 1.820e-02 | AT4G28200 ATNUP160 AP40 |
GO:0050658 RNA transport | BP | 1.820e-02 | AT4G28200 ATNUP160 AP40 |
GO:0051236 establishment of RNA localization | BP | 1.820e-02 | AT4G28200 ATNUP160 AP40 |
GO:0045935 positive regulation of nucleobase-contai... | BP | 1.820e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6 |
GO:0051173 positive regulation of nitrogen compound... | BP | 1.868e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6 |
GO:0048584 positive regulation of response to stimu... | BP | 1.888e-02 | ATMYB33 AtNUDT7 EVR ATNUDT6 |
GO:0051168 nuclear export | BP | 2.007e-02 | AT4G28200 ATNUP160 AP40 |
GO:0009617 response to bacterium | BP | 2.021e-02 | XBAT34 AT5G57060 KAPP NodGS AT3G48640 CRK5 AtNUDT7 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ATNUDT6 AT2G44920 ATWRKY25 |
GO:0010073 meristem maintenance | BP | 2.079e-02 | AT3G55720 AT4G28200 FEY CCS52A2 ATNUP160 BIO2 |
GO:0051093 negative regulation of developmental pro... | BP | 2.346e-02 | AT4G28200 CCS52A2 ATNUP160 EVR HDG2 |
GO:0010557 positive regulation of macromolecule bio... | BP | 2.399e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6 |
GO:0070925 organelle assembly | BP | 2.413e-02 | ATATG6 AP40 AtTPX2 |
GO:0045595 regulation of cell differentiation | BP | 2.447e-02 | AT4G28200 CCS52A2 ATNUP160 HDG2 |
GO:0010942 positive regulation of cell death | BP | 2.499e-02 | ATMYB33 EVR |
GO:0032875 regulation of DNA endoreduplication | BP | 2.499e-02 | GIG1 CCS52A2 |
GO:0090329 regulation of DNA-dependent DNA replicat... | BP | 2.499e-02 | GIG1 CCS52A2 |
GO:0009642 response to light intensity | BP | 2.548e-02 | XBAT34 ATBCB TIN1 LPPepsilon1 ISPF ATLOX3 PRIN2 ATCAL4 |
GO:0072503 cellular divalent inorganic cation homeo... | BP | 2.632e-02 | ATCAX3 ATGLR3.3 ACA1 |
GO:0046907 intracellular transport | BP | 2.676e-02 | XBAT34 SECE1 VPS26A AT5G17670 ATATG6 AP-3 FAR8 AT4G28570 AT4G28200 AT4G27130 AtNUDT7 ATRABA1B ATNUP160 ATPDIL5-1 ATCNGC20 PDE320 AP40 NTL ATNUDT6 TNO1 AT2G46490 ATCAL4 ATWRKY25 |
GO:0031328 positive regulation of cellular biosynth... | BP | 2.703e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6 |
GO:0051649 establishment of localization in cell | BP | 2.785e-02 | XBAT34 SECE1 VPS26A AT5G17670 ATATG6 AT3G60370 AP-3 FAR8 AT4G28570 AT4G28200 AT4G27130 AtNUDT7 ATRABA1B ATNUP160 ATPDIL5-1 ATCNGC20 PDE320 AP40 NTL ATSIG6 ATNUDT6 TNO1 AT2G46490 ATCAL4 ATWRKY25 |
GO:1902582 single-organism intracellular transport | BP | 2.798e-02 | XBAT34 SECE1 VPS26A ATATG6 AP-3 FAR8 AT4G28570 AT4G28200 AT4G27130 AtNUDT7 ATNUP160 ATPDIL5-1 ATCNGC20 PDE320 AP40 NTL ATNUDT6 TNO1 AT2G46490 ATCAL4 ATWRKY25 |
GO:0048522 positive regulation of cellular process | BP | 2.849e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF EVR ATSIG6 ATNUDT6 AtTPX2 |
GO:0007000 nucleolus organization | BP | 2.914e-02 | ATPDIL5-1 ATH7 |
GO:0006261 DNA-dependent DNA replication | BP | 2.926e-02 | RECQSIM GIG1 CCS52A2 AtTPX2 |
GO:0006275 regulation of DNA replication | BP | 2.926e-02 | RECQSIM GIG1 CCS52A2 AtTPX2 |
GO:0010310 regulation of hydrogen peroxide metaboli... | BP | 2.939e-02 | ARD XBAT34 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ATNUDT6 |
GO:0010604 positive regulation of macromolecule met... | BP | 2.966e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6 |
GO:0016109 tetraterpenoid biosynthetic process | BP | 2.970e-02 | DXR ISPF PAC ATSIG6 AT2G44920 |
GO:0016117 carotenoid biosynthetic process | BP | 2.970e-02 | DXR ISPF PAC ATSIG6 AT2G44920 |
GO:0009658 chloroplast organization | BP | 3.052e-02 | LSU2 AT3G60370 FLN1 AtCNFU1 Cpn60beta2 PAC ATSIG6 STY8 |
GO:0014070 response to organic cyclic compound | BP | 3.126e-02 | ARD XBAT34 AT3G48640 AT4G28200 AT4G26470 CRK5 AtNUDT7 AT3G17120 ATCNGC20 SDE5 AT1G13470 ATAUX2-27 UGT74E2 TTL3 ATNUDT6 ATWRKY25 |
GO:0051726 regulation of cell cycle | BP | 3.219e-02 | RECQSIM GIG1 CYCD3;3 CCS52A2 AT1G22270 AtTPX2 |
GO:0051052 regulation of DNA metabolic process | BP | 3.246e-02 | RECQSIM GIG1 ATSRS2 CCS52A2 AtTPX2 |
GO:0031325 positive regulation of cellular metaboli... | BP | 3.319e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6 |
GO:0044703 multi-organism reproductive process | BP | 3.426e-02 | AT5G46770 ATMYB33 ATATG6 GIG1 ARO1 AT4G28200 AT4G26470 UNE15 CCS52A2 ATCNGC8 EXL6 AT2G19130 |
GO:0016108 tetraterpenoid metabolic process | BP | 3.538e-02 | DXR ISPF PAC ATSIG6 AT2G44920 |
GO:0016116 carotenoid metabolic process | BP | 3.538e-02 | DXR ISPF PAC ATSIG6 AT2G44920 |
GO:0006997 nucleus organization | BP | 3.607e-02 | AT4G28200 ATPDIL5-1 ATH7 |
GO:0072507 divalent inorganic cation homeostasis | BP | 3.607e-02 | ATCAX3 ATGLR3.3 ACA1 |
GO:0045893 positive regulation of transcription, DN... | BP | 3.631e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6 |
GO:0051254 positive regulation of RNA metabolic pro... | BP | 3.631e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6 |
GO:1902680 positive regulation of RNA biosynthetic ... | BP | 3.631e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6 |
GO:1903508 positive regulation of nucleic acid-temp... | BP | 3.631e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6 |
GO:2000377 regulation of reactive oxygen species me... | BP | 3.675e-02 | ARD XBAT34 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ATNUDT6 |
GO:0019953 sexual reproduction | BP | 3.717e-02 | ATMYB33 GIG1 AT4G28200 UNE15 CCS52A2 EXL6 |
GO:0009862 systemic acquired resistance, salicylic ... | BP | 3.721e-02 | ARD XBAT34 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ATNUDT6 ATWRKY25 |
GO:0006606 protein import into nucleus | BP | 3.838e-02 | FAR8 AT4G28200 ATNUP160 NTL |
GO:0044744 protein targeting to nucleus | BP | 3.838e-02 | FAR8 AT4G28200 ATNUP160 NTL |
GO:1902593 single-organism nuclear import | BP | 3.838e-02 | FAR8 AT4G28200 ATNUP160 NTL |
GO:0006913 nucleocytoplasmic transport | BP | 4.006e-02 | FAR8 AT4G28200 ATNUP160 AP40 NTL |
GO:0051169 nuclear transport | BP | 4.006e-02 | FAR8 AT4G28200 ATNUP160 AP40 NTL |
GO:0034504 protein localization to nucleus | BP | 4.038e-02 | FAR8 AT4G28200 ATNUP160 NTL |
GO:0051170 nuclear import | BP | 4.038e-02 | FAR8 AT4G28200 ATNUP160 NTL |
GO:0042742 defense response to bacterium | BP | 4.069e-02 | XBAT34 AT5G57060 KAPP AT3G48640 CRK5 AtNUDT7 ATCNGC20 AT1G13470 ATNUDT6 AT2G44920 |
GO:0009607 response to biotic stimulus | BP | 4.240e-02 | ARD XBAT34 ATBCB ATCAX3 AT5G57060 AT5G52020 KAPP AT5G01650 ATATG6 NodGS AT3G48640 AT4G36010 CRK5 AtNUDT7 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ADR2 ATLOX3 ACA1 ATNUDT6 AT2G44920 ATWRKY25 |
GO:0043207 response to external biotic stimulus | BP | 4.240e-02 | ARD XBAT34 ATBCB ATCAX3 AT5G57060 AT5G52020 KAPP AT5G01650 ATATG6 NodGS AT3G48640 AT4G36010 CRK5 AtNUDT7 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ADR2 ATLOX3 ACA1 ATNUDT6 AT2G44920 ATWRKY25 |
GO:0051707 response to other organism | BP | 4.240e-02 | ARD XBAT34 ATBCB ATCAX3 AT5G57060 AT5G52020 KAPP AT5G01650 ATATG6 NodGS AT3G48640 AT4G36010 CRK5 AtNUDT7 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ADR2 ATLOX3 ACA1 ATNUDT6 AT2G44920 ATWRKY25 |
GO:0007034 vacuolar transport | BP | 4.244e-02 | VPS26A ATATG6 AP-3 TNO1 |
GO:0006952 defense response | BP | 4.282e-02 | ARD XBAT34 ATBCB PROPEP3 AT5G57060 AT5G52020 AT5G46450 LSU2 KAPP AT5G01650 ATATG6 NodGS ZAR1 AT3G48640 CRK5 AtNUDT7 ATGLR3.3 ATCNGC20 AT1G13470 ADR2 ATLOX3 AT1G72940 EVR ATNUDT6 AT2G44920 ATCAL4 ATWRKY25 |
GO:0009620 response to fungus | BP | 4.287e-02 | XBAT34 ATBCB AT5G52020 ATATG6 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ADR2 ATLOX3 ATNUDT6 |
GO:0009967 positive regulation of signal transducti... | BP | 4.303e-02 | ATMYB33 ATNUDT6 |
GO:0023056 positive regulation of signaling | BP | 4.303e-02 | ATMYB33 ATNUDT6 |
GO:0036294 cellular response to decreased oxygen le... | BP | 4.303e-02 | PROPEP3 AT1G14550 |
GO:0071453 cellular response to oxygen levels | BP | 4.303e-02 | PROPEP3 AT1G14550 |
GO:0071456 cellular response to hypoxia | BP | 4.303e-02 | PROPEP3 AT1G14550 |
GO:0016114 terpenoid biosynthetic process | BP | 4.368e-02 | DXR CPH ATMYB33 ATTIM23-3 ISPF PAC ATSIG6 AT2G44920 |
GO:0042023 DNA endoreduplication | BP | 4.456e-02 | GIG1 CYCD3;3 CCS52A2 AtTPX2 |
GO:0044786 cell cycle DNA replication | BP | 4.456e-02 | GIG1 CYCD3;3 CCS52A2 AtTPX2 |
GO:0007049 cell cycle | BP | 4.517e-02 | RECQSIM KAPP GIG1 CYCD3;3 FAR8 AT4G28200 NZZ ATSRS2 CCS52A2 AT1G22270 HEI10 AtTPX2 |
GO:0048193 Golgi vesicle transport | BP | 4.525e-02 | VPS26A AP-3 AT4G28570 AT4G27130 ATPDIL5-1 PDE320 AT2G46490 |
GO:0051641 cellular localization | BP | 4.577e-02 | XBAT34 SECE1 VPS26A AT5G17670 ATATG6 AT3G60370 AP-3 FAR8 AT4G28570 AT4G28200 AT4G27130 AtNUDT7 ATRABA1B ATNUP160 ATPDIL5-1 ATCNGC20 PDE320 AP40 NTL ATSIG6 ATNUDT6 TNO1 AT2G46490 ATCAL4 ATWRKY25 |
GO:0009084 glutamine family amino acid biosynthetic... | BP | 4.811e-02 | AT5G10920 NodGS |
GO:0010647 positive regulation of cell communicatio... | BP | 4.811e-02 | ATMYB33 ATNUDT6 |
GO:0046916 cellular transition metal ion homeostasi... | BP | 4.811e-02 | ATCAX3 ACA1 |
GO:0010628 positive regulation of gene expression | BP | 4.843e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6 |
GO:0006413 translational initiation | BP | 5.051e-02 | ATTIF3K1 AT4G27130 AT1G77840 |
GO:0072593 reactive oxygen species metabolic proces... | BP | 5.112e-02 | ARD XBAT34 DXR AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 GNR1 ATNUDT6 |
GO:0000280 nuclear division | BP | 5.171e-02 | GIG1 ATSRS2 ATPDIL5-1 HEI10 ATH7 AtTPX2 |
GO:0006270 DNA replication initiation | BP | 5.339e-02 | RECQSIM AtTPX2 |
GO:0010351 lithium ion transport | BP | 5.339e-02 | ATCAX3 PDE320 |
GO:0009624 response to nematode | BP | 5.369e-02 | ATCAX3 ATCNGC20 ACA1 |
GO:0000003 reproduction | BP | 6.191e-02 | ATMYB33 GIG1 FAR8 AT4G28200 NZZ ATSRS2 UNE15 CCS52A2 HEI10 ATLOX3 EXL6 |
GO:0009451 RNA modification | BP | 6.482e-02 | AT5G64380 AT3G60770 AT3G59540 AT3G44590 AT4G28200 AT3G06950 AP40 MEF9 AT2G17972 |
GO:0009891 positive regulation of biosynthetic proc... | BP | 6.535e-02 | GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6 |
GO:0072330 monocarboxylic acid biosynthetic process | BP | 6.599e-02 | XBAT34 ATBCB DXR NodGS AT3G48640 AtNUDT7 HEME1 ATCNGC20 AT1G13470 ISPF BIO2 ATLOX3 ATNUDT6 AT2G44920 |
GO:0048653 anther development | BP | 6.732e-02 | NZZ BIO2 ATLOX3 |