4.0:Analysis result:Information of module
phyB mutant 22C 4hrs

    Top 100 most enriched GO terms
GOID/TermOntologyp-valueGenes
GO:0045596
negative regulation of cell differentiat...
BP2.563e-03AT4G28200 CCS52A2 ATNUP160 HDG2
GO:0010074
maintenance of meristem identity
BP7.892e-03AT4G28200 CCS52A2 ATNUP160
GO:0009646
response to absence of light
BP9.068e-03XBAT34 ATBCB ATCAL4
GO:0051704
multi-organism process
BP9.836e-03ARD XBAT34 ATBCB ATCAX3 AT5G57060 AT5G52020 AT5G46770 KAPP ATMYB33 AT5G01650 ATATG6 GIG1 NodGS AT3G48640 AT4G36010 ARO1 AT4G28200 AT4G26470 CRK5 UNE15 AtNUDT7 CCS52A2 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ADR2 ATLOX3 ATCNGC8 ACA1 EXL6 ATNUDT6 AT2G44920 ATWRKY25 AT2G19130
GO:0019827
stem cell maintenance
BP1.475e-02AT4G28200 CCS52A2 ATNUP160
GO:0048864
stem cell development
BP1.642e-02AT4G28200 CCS52A2 ATNUP160
GO:0050832
defense response to fungus
BP1.720e-02XBAT34 ATBCB AT5G52020 ATATG6 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ADR2 ATNUDT6
GO:0042274
ribosomal small subunit biogenesis
BP1.751e-02AT3G02560 AP40
GO:0055069
zinc ion homeostasis
BP1.751e-02ATCAX3 ACA1
GO:0071483
cellular response to blue light
BP1.751e-02HRB1 ATSIG6
GO:0006403
RNA localization
BP1.820e-02AT4G28200 ATNUP160 AP40
GO:0006405
RNA export from nucleus
BP1.820e-02AT4G28200 ATNUP160 AP40
GO:0048863
stem cell differentiation
BP1.820e-02AT4G28200 CCS52A2 ATNUP160
GO:0050657
nucleic acid transport
BP1.820e-02AT4G28200 ATNUP160 AP40
GO:0050658
RNA transport
BP1.820e-02AT4G28200 ATNUP160 AP40
GO:0051236
establishment of RNA localization
BP1.820e-02AT4G28200 ATNUP160 AP40
GO:0045935
positive regulation of nucleobase-contai...
BP1.820e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6
GO:0051173
positive regulation of nitrogen compound...
BP1.868e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6
GO:0048584
positive regulation of response to stimu...
BP1.888e-02ATMYB33 AtNUDT7 EVR ATNUDT6
GO:0051168
nuclear export
BP2.007e-02AT4G28200 ATNUP160 AP40
GO:0009617
response to bacterium
BP2.021e-02XBAT34 AT5G57060 KAPP NodGS AT3G48640 CRK5 AtNUDT7 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ATNUDT6 AT2G44920 ATWRKY25
GO:0010073
meristem maintenance
BP2.079e-02AT3G55720 AT4G28200 FEY CCS52A2 ATNUP160 BIO2
GO:0051093
negative regulation of developmental pro...
BP2.346e-02AT4G28200 CCS52A2 ATNUP160 EVR HDG2
GO:0010557
positive regulation of macromolecule bio...
BP2.399e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6
GO:0070925
organelle assembly
BP2.413e-02ATATG6 AP40 AtTPX2
GO:0045595
regulation of cell differentiation
BP2.447e-02AT4G28200 CCS52A2 ATNUP160 HDG2
GO:0010942
positive regulation of cell death
BP2.499e-02ATMYB33 EVR
GO:0032875
regulation of DNA endoreduplication
BP2.499e-02GIG1 CCS52A2
GO:0090329
regulation of DNA-dependent DNA replicat...
BP2.499e-02GIG1 CCS52A2
GO:0009642
response to light intensity
BP2.548e-02XBAT34 ATBCB TIN1 LPPepsilon1 ISPF ATLOX3 PRIN2 ATCAL4
GO:0072503
cellular divalent inorganic cation homeo...
BP2.632e-02ATCAX3 ATGLR3.3 ACA1
GO:0046907
intracellular transport
BP2.676e-02XBAT34 SECE1 VPS26A AT5G17670 ATATG6 AP-3 FAR8 AT4G28570 AT4G28200 AT4G27130 AtNUDT7 ATRABA1B ATNUP160 ATPDIL5-1 ATCNGC20 PDE320 AP40 NTL ATNUDT6 TNO1 AT2G46490 ATCAL4 ATWRKY25
GO:0031328
positive regulation of cellular biosynth...
BP2.703e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6
GO:0051649
establishment of localization in cell
BP2.785e-02XBAT34 SECE1 VPS26A AT5G17670 ATATG6 AT3G60370 AP-3 FAR8 AT4G28570 AT4G28200 AT4G27130 AtNUDT7 ATRABA1B ATNUP160 ATPDIL5-1 ATCNGC20 PDE320 AP40 NTL ATSIG6 ATNUDT6 TNO1 AT2G46490 ATCAL4 ATWRKY25
GO:1902582
single-organism intracellular transport
BP2.798e-02XBAT34 SECE1 VPS26A ATATG6 AP-3 FAR8 AT4G28570 AT4G28200 AT4G27130 AtNUDT7 ATNUP160 ATPDIL5-1 ATCNGC20 PDE320 AP40 NTL ATNUDT6 TNO1 AT2G46490 ATCAL4 ATWRKY25
GO:0048522
positive regulation of cellular process
BP2.849e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF EVR ATSIG6 ATNUDT6 AtTPX2
GO:0007000
nucleolus organization
BP2.914e-02ATPDIL5-1 ATH7
GO:0006261
DNA-dependent DNA replication
BP2.926e-02RECQSIM GIG1 CCS52A2 AtTPX2
GO:0006275
regulation of DNA replication
BP2.926e-02RECQSIM GIG1 CCS52A2 AtTPX2
GO:0010310
regulation of hydrogen peroxide metaboli...
BP2.939e-02ARD XBAT34 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ATNUDT6
GO:0010604
positive regulation of macromolecule met...
BP2.966e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6
GO:0016109
tetraterpenoid biosynthetic process
BP2.970e-02DXR ISPF PAC ATSIG6 AT2G44920
GO:0016117
carotenoid biosynthetic process
BP2.970e-02DXR ISPF PAC ATSIG6 AT2G44920
GO:0009658
chloroplast organization
BP3.052e-02LSU2 AT3G60370 FLN1 AtCNFU1 Cpn60beta2 PAC ATSIG6 STY8
GO:0014070
response to organic cyclic compound
BP3.126e-02ARD XBAT34 AT3G48640 AT4G28200 AT4G26470 CRK5 AtNUDT7 AT3G17120 ATCNGC20 SDE5 AT1G13470 ATAUX2-27 UGT74E2 TTL3 ATNUDT6 ATWRKY25
GO:0051726
regulation of cell cycle
BP3.219e-02RECQSIM GIG1 CYCD3;3 CCS52A2 AT1G22270 AtTPX2
GO:0051052
regulation of DNA metabolic process
BP3.246e-02RECQSIM GIG1 ATSRS2 CCS52A2 AtTPX2
GO:0031325
positive regulation of cellular metaboli...
BP3.319e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6
GO:0044703
multi-organism reproductive process
BP3.426e-02AT5G46770 ATMYB33 ATATG6 GIG1 ARO1 AT4G28200 AT4G26470 UNE15 CCS52A2 ATCNGC8 EXL6 AT2G19130
GO:0016108
tetraterpenoid metabolic process
BP3.538e-02DXR ISPF PAC ATSIG6 AT2G44920
GO:0016116
carotenoid metabolic process
BP3.538e-02DXR ISPF PAC ATSIG6 AT2G44920
GO:0006997
nucleus organization
BP3.607e-02AT4G28200 ATPDIL5-1 ATH7
GO:0072507
divalent inorganic cation homeostasis
BP3.607e-02ATCAX3 ATGLR3.3 ACA1
GO:0045893
positive regulation of transcription, DN...
BP3.631e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6
GO:0051254
positive regulation of RNA metabolic pro...
BP3.631e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6
GO:1902680
positive regulation of RNA biosynthetic ...
BP3.631e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6
GO:1903508
positive regulation of nucleic acid-temp...
BP3.631e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6
GO:2000377
regulation of reactive oxygen species me...
BP3.675e-02ARD XBAT34 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ATNUDT6
GO:0019953
sexual reproduction
BP3.717e-02ATMYB33 GIG1 AT4G28200 UNE15 CCS52A2 EXL6
GO:0009862
systemic acquired resistance, salicylic ...
BP3.721e-02ARD XBAT34 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ATNUDT6 ATWRKY25
GO:0006606
protein import into nucleus
BP3.838e-02FAR8 AT4G28200 ATNUP160 NTL
GO:0044744
protein targeting to nucleus
BP3.838e-02FAR8 AT4G28200 ATNUP160 NTL
GO:1902593
single-organism nuclear import
BP3.838e-02FAR8 AT4G28200 ATNUP160 NTL
GO:0006913
nucleocytoplasmic transport
BP4.006e-02FAR8 AT4G28200 ATNUP160 AP40 NTL
GO:0051169
nuclear transport
BP4.006e-02FAR8 AT4G28200 ATNUP160 AP40 NTL
GO:0034504
protein localization to nucleus
BP4.038e-02FAR8 AT4G28200 ATNUP160 NTL
GO:0051170
nuclear import
BP4.038e-02FAR8 AT4G28200 ATNUP160 NTL
GO:0042742
defense response to bacterium
BP4.069e-02XBAT34 AT5G57060 KAPP AT3G48640 CRK5 AtNUDT7 ATCNGC20 AT1G13470 ATNUDT6 AT2G44920
GO:0009607
response to biotic stimulus
BP4.240e-02ARD XBAT34 ATBCB ATCAX3 AT5G57060 AT5G52020 KAPP AT5G01650 ATATG6 NodGS AT3G48640 AT4G36010 CRK5 AtNUDT7 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ADR2 ATLOX3 ACA1 ATNUDT6 AT2G44920 ATWRKY25
GO:0043207
response to external biotic stimulus
BP4.240e-02ARD XBAT34 ATBCB ATCAX3 AT5G57060 AT5G52020 KAPP AT5G01650 ATATG6 NodGS AT3G48640 AT4G36010 CRK5 AtNUDT7 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ADR2 ATLOX3 ACA1 ATNUDT6 AT2G44920 ATWRKY25
GO:0051707
response to other organism
BP4.240e-02ARD XBAT34 ATBCB ATCAX3 AT5G57060 AT5G52020 KAPP AT5G01650 ATATG6 NodGS AT3G48640 AT4G36010 CRK5 AtNUDT7 AT1G33970 AT3G22060 ATCNGC20 AT1G13470 ADR2 ATLOX3 ACA1 ATNUDT6 AT2G44920 ATWRKY25
GO:0007034
vacuolar transport
BP4.244e-02VPS26A ATATG6 AP-3 TNO1
GO:0006952
defense response
BP4.282e-02ARD XBAT34 ATBCB PROPEP3 AT5G57060 AT5G52020 AT5G46450 LSU2 KAPP AT5G01650 ATATG6 NodGS ZAR1 AT3G48640 CRK5 AtNUDT7 ATGLR3.3 ATCNGC20 AT1G13470 ADR2 ATLOX3 AT1G72940 EVR ATNUDT6 AT2G44920 ATCAL4 ATWRKY25
GO:0009620
response to fungus
BP4.287e-02XBAT34 ATBCB AT5G52020 ATATG6 AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 ADR2 ATLOX3 ATNUDT6
GO:0009967
positive regulation of signal transducti...
BP4.303e-02ATMYB33 ATNUDT6
GO:0023056
positive regulation of signaling
BP4.303e-02ATMYB33 ATNUDT6
GO:0036294
cellular response to decreased oxygen le...
BP4.303e-02PROPEP3 AT1G14550
GO:0071453
cellular response to oxygen levels
BP4.303e-02PROPEP3 AT1G14550
GO:0071456
cellular response to hypoxia
BP4.303e-02PROPEP3 AT1G14550
GO:0016114
terpenoid biosynthetic process
BP4.368e-02DXR CPH ATMYB33 ATTIM23-3 ISPF PAC ATSIG6 AT2G44920
GO:0042023
DNA endoreduplication
BP4.456e-02GIG1 CYCD3;3 CCS52A2 AtTPX2
GO:0044786
cell cycle DNA replication
BP4.456e-02GIG1 CYCD3;3 CCS52A2 AtTPX2
GO:0007049
cell cycle
BP4.517e-02RECQSIM KAPP GIG1 CYCD3;3 FAR8 AT4G28200 NZZ ATSRS2 CCS52A2 AT1G22270 HEI10 AtTPX2
GO:0048193
Golgi vesicle transport
BP4.525e-02VPS26A AP-3 AT4G28570 AT4G27130 ATPDIL5-1 PDE320 AT2G46490
GO:0051641
cellular localization
BP4.577e-02XBAT34 SECE1 VPS26A AT5G17670 ATATG6 AT3G60370 AP-3 FAR8 AT4G28570 AT4G28200 AT4G27130 AtNUDT7 ATRABA1B ATNUP160 ATPDIL5-1 ATCNGC20 PDE320 AP40 NTL ATSIG6 ATNUDT6 TNO1 AT2G46490 ATCAL4 ATWRKY25
GO:0009084
glutamine family amino acid biosynthetic...
BP4.811e-02AT5G10920 NodGS
GO:0010647
positive regulation of cell communicatio...
BP4.811e-02ATMYB33 ATNUDT6
GO:0046916
cellular transition metal ion homeostasi...
BP4.811e-02ATCAX3 ACA1
GO:0010628
positive regulation of gene expression
BP4.843e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 AT3G20680 ISPF ATSIG6
GO:0006413
translational initiation
BP5.051e-02ATTIF3K1 AT4G27130 AT1G77840
GO:0072593
reactive oxygen species metabolic proces...
BP5.112e-02ARD XBAT34 DXR AT3G48640 AtNUDT7 ATCNGC20 AT1G13470 GNR1 ATNUDT6
GO:0000280
nuclear division
BP5.171e-02GIG1 ATSRS2 ATPDIL5-1 HEI10 ATH7 AtTPX2
GO:0006270
DNA replication initiation
BP5.339e-02RECQSIM AtTPX2
GO:0010351
lithium ion transport
BP5.339e-02ATCAX3 PDE320
GO:0009624
response to nematode
BP5.369e-02ATCAX3 ATCNGC20 ACA1
GO:0000003
reproduction
BP6.191e-02ATMYB33 GIG1 FAR8 AT4G28200 NZZ ATSRS2 UNE15 CCS52A2 HEI10 ATLOX3 EXL6
GO:0009451
RNA modification
BP6.482e-02AT5G64380 AT3G60770 AT3G59540 AT3G44590 AT4G28200 AT3G06950 AP40 MEF9 AT2G17972
GO:0009891
positive regulation of biosynthetic proc...
BP6.535e-02GSA1 AT5G52020 LSU2 ATMYB33 AT3G60370 FLN1 AT4G28200 CCS52A2 AT3G20680 ISPF ATSIG6
GO:0072330
monocarboxylic acid biosynthetic process
BP6.599e-02XBAT34 ATBCB DXR NodGS AT3G48640 AtNUDT7 HEME1 ATCNGC20 AT1G13470 ISPF BIO2 ATLOX3 ATNUDT6 AT2G44920
GO:0048653
anther development
BP6.732e-02NZZ BIO2 ATLOX3