4.0:Information of module
phyB mutant 22C 4hrs
In comparison with Time-0 chr11-1chr17-1 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009314 response to radiation BP 6.773e-06
GO:0009416 response to light stimulus BP 1.675e-05
GO:0010033 response to organic substance BP 1.921e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0045596 negative regulation of cell differentiat... BP 2.563e-03
GO:0010074 maintenance of meristem identity BP 7.892e-03
GO:0009646 response to absence of light BP 9.068e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
phyB mutant 22C 4hrs		 Log2 signal ratio
Time-0 chr11-1chr17-1
1 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 0.800 0.847
2 246380_at AT1G57750 CYP96A15, cytochrome P450, family 96, subfamily A, polypeptide 15, MAH1, MID-CHAIN ALKANE HYDROXYLASE 1 0.422 -0.005
3 254574_at AT4G19430 unknown 0.332 0.981
4 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 0.272 -0.013
5 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 0.260 0.085
6 257129_at AT3G20100 CYP705A19, cytochrome P450, family 705, subfamily A, polypeptide 19 0.247 0.095
7 247882_at AT5G57785 unknown 0.233 0.462
8 258859_at AT3G02120 [hydroxyproline-rich glycoprotein family protein] 0.202 0.093
9 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 0.197 -0.568
10 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.190 0.665
11 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 0.187 0.285
12 253479_at AT4G32360 [Pyridine nucleotide-disulphide oxidoreductase family protein] 0.178 0.105
13 258560_at AT3G06020 FAF4, FANTASTIC FOUR 4 0.162 -0.024
14 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 0.157 0.127
15 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 0.153 -0.209
16 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 0.147 -0.014
17 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.146 0.136
18 257017_at AT3G19620 [Glycosyl hydrolase family protein] 0.146 0.062
19 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.146 -0.841
20 252345_at AT3G48640 unknown -0.427 -0.468
21 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 -0.385 0.041
22 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.309 -1.055
23 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 -0.290 -0.533
24 267166_at AT2G37720 TBL15, TRICHOME BIREFRINGENCE-LIKE 15 -0.233 0.024
25 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.230 0.100
26 245567_at AT4G14630 GLP9, germin-like protein 9 -0.211 -0.746
27 259629_at AT1G56510 ADR2, ACTIVATED DISEASE RESISTANCE 2, WRR4, WHITE RUST RESISTANCE 4 -0.209 -0.187
28 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.195 -0.011
29 245240_at AT1G44510 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.191 -0.058
30 245569_at AT4G14660 NRPE7 -0.176 -0.057
31 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.172 -0.116
32 259084_at AT3G04800 ATTIM23-3, translocase inner membrane subunit 23-3, TIM23-3, translocase inner membrane subunit 23-3 -0.166 0.031
33 258088_at AT3G14580 [Pentatricopeptide repeat (PPR) superfamily protein] -0.164 0.041
34 265075_at AT1G55450 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.164 -0.058
35 266853_at AT2G26790 [Pentatricopeptide repeat (PPR) superfamily protein] -0.161 -0.055
36 250113_at AT5G16320 FRL1, FRIGIDA like 1 -0.158 0.004
37 264785_at AT2G17910 [non-LTR retrotransposon family (LINE), has a 1.8e-42 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)] -0.153 -0.035