4.0:Information of module
phyB mutant 22C 10hrs
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044106 cellular amine metabolic process BP 8.857e-05
GO:0009074 aromatic amino acid family catabolic pro... BP 1.181e-04
GO:0009308 amine metabolic process BP 2.262e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009814 defense response, incompatible interacti... BP 1.572e-16
GO:0009627 systemic acquired resistance BP 2.291e-16
GO:0045087 innate immune response BP 1.051e-14
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
phyB mutant 22C 10hrs		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 0.750 -0.202
2 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.705 -0.122
3 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 0.680 -0.149
4 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 0.678 0.440
5 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 0.521 -0.734
6 261425_at AT1G18880 AtNPF2.9, NPF2.9, NRT1/ PTR family 2.9, NRT1.9, nitrate transporter 1.9 0.339 -0.555
7 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 0.269 -0.309
8 254451_at AT4G21090 ATMFDX2, ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MFDX2, MITOCHONDRIAL FERREDOXIN 2 0.240 0.148
9 251368_at AT3G61380 TRM14, TON1 Recruiting Motif 14 0.209 -0.177
10 259149_at AT3G10340 PAL4, phenylalanine ammonia-lyase 4 0.199 -0.918
11 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] 0.196 0.259
12 262646_at AT1G62800 ASP4, aspartate aminotransferase 4 0.178 -0.107
13 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 0.176 0.846
14 266352_at AT2G01610 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.167 -1.036
15 250556_at AT5G07920 ATDGK1, DIACYLGLYCEROL KINASE 1, DGK1, diacylglycerol kinase1 0.166 0.190
16 257701_at AT3G12710 [DNA glycosylase superfamily protein] 0.160 0.811
17 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 0.151 0.535
18 255080_at AT4G09030 AGP10, arabinogalactan protein 10, ATAGP10 0.151 1.541
19 255727_at AT1G25510 [Eukaryotic aspartyl protease family protein] 0.148 0.055
20 261050_at AT1G01260 JAM2, Jasmonate Associated MYC2 LIKE 2 0.135 0.131
21 252345_at AT3G48640 unknown -0.576 -0.810
22 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] -0.555 -1.136
23 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 -0.541 -0.605
24 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 -0.455 -0.472
25 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 -0.418 0.487
26 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 -0.360 -0.691
27 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.338 -0.992
28 247602_at AT5G60900 RLK1, receptor-like protein kinase 1 -0.337 -0.569
29 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -0.318 -0.853
30 256337_at AT1G72060 [serine-type endopeptidase inhibitors] -0.289 -0.194
31 253414_at AT4G33050 AtIQM1, EDA39, embryo sac development arrest 39, IQM1, IQ-motif protein 1 -0.280 -0.932
32 249783_at AT5G24270 ATSOS3, SALT OVERLY SENSITIVE 3, CBL4, CALCINEURIN B-LIKE PROTEIN 4, SOS3, SALT OVERLY SENSITIVE 3 -0.278 0.774
33 251621_at AT3G57700 [Protein kinase superfamily protein] -0.274 -0.696
34 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 -0.264 -0.231
35 260211_at AT1G74440 unknown -0.216 -0.664
36 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 -0.216 -0.083
37 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 -0.209 0.210
38 252037_at AT3G51920 ATCML9, CAM9, calmodulin 9, CML9, CALMODULIN LIKE PROTEIN 9 -0.208 0.244
39 258227_at AT3G15620 UVR3, UV REPAIR DEFECTIVE 3 -0.189 0.158