4.0:Information of module
phyB mutant 16C 4hrs
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0051726 regulation of cell cycle BP 1.143e-03
GO:0046488 phosphatidylinositol metabolic process BP 1.543e-03
GO:0009247 glycolipid biosynthetic process BP 2.102e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006006 glucose metabolic process BP 6.378e-06
GO:0019318 hexose metabolic process BP 6.426e-06
GO:0006007 glucose catabolic process BP 6.451e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
phyB mutant 16C 4hrs		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 0.722 -0.149
2 247819_at AT5G58350 WNK4, with no lysine (K) kinase 4, ZIK2 0.366 0.886
3 263039_at AT1G23280 [MAK16 protein-related] 0.289 0.266
4 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.249 0.081
5 255948_at AT1G22060 [LOCATED IN: vacuole] 0.232 0.495
6 249577_at AT5G37710 [alpha/beta-Hydrolases superfamily protein] 0.212 0.752
7 267497_at AT2G30540 [Thioredoxin superfamily protein] 0.211 -0.914
8 246315_at AT3G56870 unknown 0.208 0.176
9 267632_at AT2G42160 BRIZ1, BRAP2 RING ZnF UBP domain-containing protein 1 0.197 -0.218
10 255790_at AT2G33560 BUBR1, BUB1-related (BUB1: budding uninhibited by benzymidazol 1) 0.168 -0.596
11 264537_at AT1G55610 BRL1, BRI1 like 0.167 -0.764
12 249553_at AT5G38260 [Protein kinase superfamily protein] 0.166 -0.125
13 246080_at AT5G20460 unknown 0.160 -1.096
14 251021_at AT5G02140 [Pathogenesis-related thaumatin superfamily protein] 0.157 -0.613
15 261584_at AT1G01040 ASU1, ABNORMAL SUSPENSOR 1, ATDCL1, DICER-LIKE 1, CAF, CARPEL FACTORY, DCL1, dicer-like 1, EMB60, EMBRYO DEFECTIVE 60, EMB76, EMBRYO DEFECTIVE 76, SIN1, SHORT INTEGUMENTS 1, SUS1, SUSPENSOR 1 0.120 -0.078
16 262321_at AT1G27570 [phosphatidylinositol 3- and 4-kinase family protein] -0.321 -0.336
17 265831_at AT2G14460 unknown -0.288 0.822
18 260685_at AT1G17650 AtGLYR2, GLYR2, glyoxylate reductase 2, GR2, GLYOXYLATE REDUCTASE 2 -0.246 0.106
19 261700_at AT1G32690 unknown -0.226 0.818
20 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 -0.209 0.432
21 259404_at AT1G17720 ATB BETA -0.201 1.000
22 266698_at AT2G19830 SNF7.2, VPS32 -0.196 0.577
23 262080_at AT1G59650 CW14 -0.194 0.025
24 259568_at AT1G20490 [AMP-dependent synthetase and ligase family protein] -0.188 -0.457
25 255918_at AT5G28570 unknown -0.183 -0.851
26 258986_at AT3G08910 [DNAJ heat shock family protein] -0.182 -0.187
27 252308_at AT3G49310 [Major facilitator superfamily protein] -0.176 1.361
28 250446_at AT5G10770 [Eukaryotic aspartyl protease family protein] -0.172 0.041
29 252084_at AT3G51970 ASAT1, acyl-CoA sterol acyl transferase 1, ATASAT1, ATSAT1, ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1 -0.170 -0.688