4.0:Analysis result:Information of module
| phyB mutant 16C 4hrs |
Top 100 most enriched GO terms
| GOID/Term | Ontology | p-value | Genes |
|---|---|---|---|
| GO:0051726 regulation of cell cycle | BP | 1.143e-03 | AT3G56870 CHR24 AtMAD1 DDB1B EDA8 BUBR1 SNL1 ATMCM2 CYCB2;4 |
| GO:0046488 phosphatidylinositol metabolic process | BP | 1.543e-03 | AT5G14850 SETH2 FAB1D AT1G65510 AtOZF1 |
| GO:0009247 glycolipid biosynthetic process | BP | 2.102e-03 | ATSUS6 AT5G14850 WNK4 SETH2 SQD1 |
| GO:0006661 phosphatidylinositol biosynthetic proces... | BP | 3.343e-03 | AT5G14850 SETH2 AT1G65510 AtOZF1 |
| GO:0006664 glycolipid metabolic process | BP | 4.129e-03 | ATSUS6 AT5G14850 WNK4 SETH2 SQD1 |
| GO:1903509 liposaccharide metabolic process | BP | 4.129e-03 | ATSUS6 AT5G14850 WNK4 SETH2 SQD1 |
| GO:0046467 membrane lipid biosynthetic process | BP | 4.389e-03 | ATSUS6 AT5G14850 WNK4 SETH2 SQD1 |
| GO:0006270 DNA replication initiation | BP | 5.921e-03 | CHR24 BUBR1 ATMCM2 CYCB2;4 |
| GO:0006650 glycerophospholipid metabolic process | BP | 6.903e-03 | AT5G14850 SETH2 FAB1D AT1G65510 AtOZF1 |
| GO:0031048 chromatin silencing by small RNA | BP | 6.903e-03 | AT3G56870 ARF5 PPK1 CYCB2;4 ATMAP70-3 |
| GO:0007049 cell cycle | BP | 7.034e-03 | AFH14 AT3G56870 CHR24 AtMAD1 DDB1B EDA8 BUBR1 SNL1 AHP2 PPK1 ATMCM2 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0009880 embryonic pattern specification | BP | 7.699e-03 | DDB1B ARF5 ASU1 |
| GO:0051276 chromosome organization | BP | 8.190e-03 | AT5G12350 AT3G56870 AT5G12910 DDB1B ARF5 BUBR1 HMG HTA13 AHP2 PPK1 ATMCM2 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0006643 membrane lipid metabolic process | BP | 1.028e-02 | ATSUS6 AT5G14850 WNK4 SETH2 SQD1 |
| GO:0046486 glycerolipid metabolic process | BP | 1.077e-02 | AT5G14850 SETH2 FAB1D AT1G65510 AtOZF1 |
| GO:0006346 methylation-dependent chromatin silencin... | BP | 1.180e-02 | AT3G56870 ARF5 PPK1 CYCB2;4 ATMAP70-3 |
| GO:0046474 glycerophospholipid biosynthetic process | BP | 1.291e-02 | AT5G14850 SETH2 AT1G65510 AtOZF1 |
| GO:0051567 histone H3-K9 methylation | BP | 1.366e-02 | AT3G56870 ARF5 PPK1 ATMCM2 CYCB2;4 ATMAP70-3 |
| GO:0061647 histone H3-K9 modification | BP | 1.366e-02 | AT3G56870 ARF5 PPK1 ATMCM2 CYCB2;4 ATMAP70-3 |
| GO:0006275 regulation of DNA replication | BP | 1.466e-02 | AT3G56870 CHR24 BUBR1 ATMCM2 CYCB2;4 |
| GO:0045017 glycerolipid biosynthetic process | BP | 1.872e-02 | AT5G14850 SETH2 AT1G65510 AtOZF1 |
| GO:0009790 embryo development | BP | 2.074e-02 | emb1441 EMB2744 DDB1B EDA8 ARF5 LEA14 MGP3 ATMCM2 ASU1 |
| GO:0022402 cell cycle process | BP | 2.364e-02 | AT3G56870 AtMAD1 DDB1B EDA8 BUBR1 AHP2 PPK1 ATMCM2 ASU1 ATMAP70-3 |
| GO:0006261 DNA-dependent DNA replication | BP | 2.416e-02 | CHR24 BUBR1 AHP2 ATMCM2 CYCB2;4 |
| GO:0007346 regulation of mitotic cell cycle | BP | 2.708e-02 | AT3G56870 AtMAD1 BUBR1 SNL1 |
| GO:0034968 histone lysine methylation | BP | 2.816e-02 | AT3G56870 ARF5 PPK1 ATMCM2 CYCB2;4 ATMAP70-3 |
| GO:0043414 macromolecule methylation | BP | 2.882e-02 | AT3G56870 ARF5 DML2 PPK1 ATMCM2 ASU1 CYCB2;4 AT1G23280 ATMAP70-3 |
| GO:0018022 peptidyl-lysine methylation | BP | 2.896e-02 | AT3G56870 ARF5 PPK1 ATMCM2 CYCB2;4 ATMAP70-3 |
| GO:0044087 regulation of cellular component biogene... | BP | 2.946e-02 | ATNEK6 AtMYB85 ARF5 ATMAP70-3 |
| GO:0032259 methylation | BP | 3.174e-02 | AT3G56870 ARF5 DML2 PPK1 ATMCM2 ASU1 CYCB2;4 AT1G23280 ATMAP70-3 |
| GO:0007015 actin filament organization | BP | 3.327e-02 | AFH14 ATNEK6 ARF5 ATMAP70-3 |
| GO:0006644 phospholipid metabolic process | BP | 3.369e-02 | AT5G14850 SETH2 FAB1D AT1G65510 AtOZF1 |
| GO:0044702 single organism reproductive process | BP | 3.725e-02 | AFH14 AT3G56870 CHR24 emb1441 EMB2744 DDB1B EDA8 ARF5 BUBR1 ATROPGEF8 SNL1 LEA14 MGP3 PPK1 ATMCM2 ASU1 AT2G28450 ATMAP70-3 AT2G30540 |
| GO:0006325 chromatin organization | BP | 3.888e-02 | AT3G56870 AT5G12910 ARF5 HMG HTA13 PPK1 ATMCM2 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0048367 shoot system development | BP | 3.908e-02 | AT3G56870 CHR24 ATCLC-E DDB1B EDA8 ARF5 BUBR1 ELO1 ATATG2 SNL1 MGP3 PPK1 ATMCM2 ASU1 AT2G30540 |
| GO:2000026 regulation of multicellular organismal d... | BP | 4.152e-02 | AT3G56870 DDB1B EDA8 ARF5 AT1G22060 ELO1 PPK1 ATMCM2 ASU1 BRIZ1 |
| GO:0006342 chromatin silencing | BP | 4.171e-02 | AT3G56870 ARF5 PPK1 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0048580 regulation of post-embryonic development | BP | 4.269e-02 | AT3G56870 DDB1B EDA8 ARF5 PPK1 ATMCM2 ASU1 BRIZ1 |
| GO:0045814 negative regulation of gene expression, ... | BP | 4.274e-02 | AT3G56870 ARF5 PPK1 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0045786 negative regulation of cell cycle | BP | 4.350e-02 | AtMAD1 BUBR1 |
| GO:0018205 peptidyl-lysine modification | BP | 4.441e-02 | AT3G56870 ARF5 SNL1 PPK1 ATMCM2 CYCB2;4 ATMAP70-3 |
| GO:0030036 actin cytoskeleton organization | BP | 4.478e-02 | AFH14 ATNEK6 ARF5 ATMAP70-3 |
| GO:0032501 multicellular organismal process | BP | 4.542e-02 | AT5G12350 AFH14 AT3G56870 ATHDH CHR24 WNK4 emb1441 EMB2744 ANAC087 ATNEK6 ATCLC-E DDB1B EDA8 ARF5 BUBR1 AT1G22060 ELO1 ATATG2 ATROPGEF8 SNL1 LEA14 MGP3 PPK1 ATMCM2 ASU1 CYCB2;4 AT1G61500 AT2G28450 ATMAP70-3 CXIP4 AT2G30540 BRIZ1 |
| GO:0010638 positive regulation of organelle organiz... | BP | 4.635e-02 | AT5G12350 ATNEK6 ARF5 ATMAP70-3 |
| GO:0034470 ncRNA processing | BP | 4.635e-02 | DIM1B AtTRM AtCHUP1 ASU1 |
| GO:0051239 regulation of multicellular organismal p... | BP | 4.714e-02 | AT3G56870 DDB1B EDA8 ARF5 AT1G22060 ELO1 PPK1 ATMCM2 ASU1 BRIZ1 |
| GO:0051130 positive regulation of cellular componen... | BP | 4.796e-02 | AT5G12350 ATNEK6 ARF5 ATMAP70-3 |
| GO:0050793 regulation of developmental process | BP | 4.927e-02 | AT3G56870 AtPERK8 DDB1B EDA8 ARF5 AT1G22060 ELO1 PPK1 ATMCM2 ASU1 BRIZ1 |
| GO:0010564 regulation of cell cycle process | BP | 4.960e-02 | AT3G56870 DDB1B EDA8 BUBR1 |
| GO:0006333 chromatin assembly or disassembly | BP | 5.089e-02 | AT5G12910 HMG HTA13 |
| GO:0019374 galactolipid metabolic process | BP | 5.089e-02 | ATSUS6 WNK4 SQD1 |
| GO:0019375 galactolipid biosynthetic process | BP | 5.089e-02 | ATSUS6 WNK4 SQD1 |
| GO:0008283 cell proliferation | BP | 5.153e-02 | CHR24 BUBR1 ELO1 HTA13 ATMCM2 CYCB2;4 |
| GO:0007275 multicellular organismal development | BP | 5.177e-02 | AT5G12350 AFH14 AT3G56870 ATHDH CHR24 WNK4 emb1441 EMB2744 ANAC087 ATNEK6 ATCLC-E DDB1B EDA8 ARF5 BUBR1 AT1G22060 ELO1 ATATG2 SNL1 LEA14 MGP3 PPK1 ATMCM2 ASU1 CYCB2;4 AT2G28450 ATMAP70-3 CXIP4 AT2G30540 BRIZ1 |
| GO:0071103 DNA conformation change | BP | 5.319e-02 | AT5G12910 HTA13 ATMCM2 |
| GO:0051052 regulation of DNA metabolic process | BP | 5.325e-02 | AT3G56870 CHR24 BUBR1 ATMCM2 CYCB2;4 |
| GO:0048856 anatomical structure development | BP | 5.500e-02 | AT5G12350 AFH14 AT3G56870 ATHDH CHR24 WNK4 emb1441 EMB2744 AtPERK8 ATNEK6 ATCLC-E DDB1B EDA8 ARF5 BUBR1 AT1G22060 ELO1 ATATG2 ATROPGEF8 SNL1 LEA14 MGP3 PPK1 ATMCM2 ASU1 CYCB2;4 AT2G28450 ATMAP70-3 CXIP4 AT2G30540 |
| GO:0040029 regulation of gene expression, epigeneti... | BP | 5.707e-02 | AT3G56870 ARF5 DML2 PPK1 ATMCM2 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0006305 DNA alkylation | BP | 5.753e-02 | DML2 PPK1 ATMCM2 ASU1 CYCB2;4 |
| GO:0006306 DNA methylation | BP | 5.753e-02 | DML2 PPK1 ATMCM2 ASU1 CYCB2;4 |
| GO:0044707 single-multicellular organism process | BP | 5.796e-02 | AT5G12350 AFH14 AT3G56870 ATHDH CHR24 WNK4 emb1441 EMB2744 ANAC087 ATNEK6 ATCLC-E DDB1B EDA8 ARF5 BUBR1 AT1G22060 ELO1 ATATG2 SNL1 LEA14 MGP3 PPK1 ATMCM2 ASU1 CYCB2;4 AT2G28450 ATMAP70-3 CXIP4 AT2G30540 BRIZ1 |
| GO:0008654 phospholipid biosynthetic process | BP | 5.824e-02 | AT5G14850 SETH2 AT1G65510 AtOZF1 |
| GO:0051128 regulation of cellular component organiz... | BP | 5.880e-02 | AT5G12350 AtPERK8 ATNEK6 ARF5 BUBR1 ATMAP70-3 |
| GO:0006813 potassium ion transport | BP | 5.885e-02 | KAT1 AT3G09030 |
| GO:0044728 DNA methylation or demethylation | BP | 6.048e-02 | DML2 PPK1 ATMCM2 ASU1 CYCB2;4 |
| GO:0022414 reproductive process | BP | 6.167e-02 | AFH14 AT3G56870 CHR24 emb1441 EMB2744 DDB1B EDA8 ARF5 BUBR1 ATROPGEF8 SNL1 LEA14 MGP3 PPK1 ATMCM2 ASU1 AT1G61500 AT2G28450 ATMAP70-3 CXIP4 AT2G30540 |
| GO:0006304 DNA modification | BP | 6.199e-02 | DML2 PPK1 ATMCM2 ASU1 CYCB2;4 |
| GO:0044767 single-organism developmental process | BP | 6.229e-02 | AT5G12350 AFH14 AT3G56870 ATHDH CHR24 WNK4 emb1441 EMB2744 AtPERK8 ANAC087 ATNEK6 ATCLC-E DDB1B EDA8 ARF5 BUBR1 AT1G22060 ELO1 ATATG2 ATROPGEF8 SNL1 LEA14 MGP3 PPK1 ATMCM2 ASU1 CYCB2;4 AT2G28450 ATMAP70-3 CXIP4 AT2G30540 BRIZ1 |
| GO:0006259 DNA metabolic process | BP | 6.230e-02 | AT3G56870 CHR24 DDB1B BUBR1 DML2 AHP2 PPK1 ATMCM2 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0006869 lipid transport | BP | 6.290e-02 | AT5G07630 AT4G22470 CXIP4 |
| GO:0016571 histone methylation | BP | 6.531e-02 | AT3G56870 ARF5 PPK1 ATMCM2 CYCB2;4 ATMAP70-3 |
| GO:0033043 regulation of organelle organization | BP | 6.665e-02 | AT5G12350 ATNEK6 ARF5 BUBR1 ATMAP70-3 |
| GO:0006260 DNA replication | BP | 6.666e-02 | AT3G56870 CHR24 BUBR1 AHP2 ATMCM2 CYCB2;4 |
| GO:1903047 mitotic cell cycle process | BP | 6.666e-02 | AT3G56870 AtMAD1 BUBR1 PPK1 ATMCM2 ASU1 |
| GO:0006479 protein methylation | BP | 6.942e-02 | AT3G56870 ARF5 PPK1 ATMCM2 CYCB2;4 ATMAP70-3 |
| GO:0008213 protein alkylation | BP | 6.942e-02 | AT3G56870 ARF5 PPK1 ATMCM2 CYCB2;4 ATMAP70-3 |
| GO:0009908 flower development | BP | 7.004e-02 | AT3G56870 CHR24 EDA8 ARF5 BUBR1 SNL1 MGP3 PPK1 ATMCM2 ASU1 AT2G30540 |
| GO:0030838 positive regulation of actin filament po... | BP | 7.068e-02 | ATNEK6 ARF5 ATMAP70-3 |
| GO:0045010 actin nucleation | BP | 7.068e-02 | ATNEK6 ARF5 ATMAP70-3 |
| GO:0006334 nucleosome assembly | BP | 7.140e-02 | AT5G12910 HTA13 |
| GO:0034728 nucleosome organization | BP | 7.140e-02 | AT5G12910 HTA13 |
| GO:0009793 embryo development ending in seed dorman... | BP | 7.173e-02 | emb1441 EMB2744 DDB1B EDA8 ARF5 LEA14 MGP3 |
| GO:0018193 peptidyl-amino acid modification | BP | 7.173e-02 | AT3G56870 ARF5 SNL1 PPK1 ATMCM2 CYCB2;4 ATMAP70-3 |
| GO:0045892 negative regulation of transcription, DN... | BP | 7.173e-02 | AT3G56870 ARF5 SNL1 PPK1 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0051253 negative regulation of RNA metabolic pro... | BP | 7.173e-02 | AT3G56870 ARF5 SNL1 PPK1 ASU1 CYCB2;4 ATMAP70-3 |
| GO:1902679 negative regulation of RNA biosynthetic ... | BP | 7.173e-02 | AT3G56870 ARF5 SNL1 PPK1 ASU1 CYCB2;4 ATMAP70-3 |
| GO:1903507 negative regulation of nucleic acid-temp... | BP | 7.173e-02 | AT3G56870 ARF5 SNL1 PPK1 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0031324 negative regulation of cellular metaboli... | BP | 7.307e-02 | AT3G56870 ARF5 BUBR1 SNL1 PPK1 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0048316 seed development | BP | 7.307e-02 | emb1441 EMB2744 DDB1B EDA8 ARF5 LEA14 MGP3 ASU1 |
| GO:0031334 positive regulation of protein complex a... | BP | 7.337e-02 | ATNEK6 ARF5 ATMAP70-3 |
| GO:0032273 positive regulation of protein polymeriz... | BP | 7.337e-02 | ATNEK6 ARF5 ATMAP70-3 |
| GO:0051495 positive regulation of cytoskeleton orga... | BP | 7.337e-02 | ATNEK6 ARF5 ATMAP70-3 |
| GO:0003006 developmental process involved in reprod... | BP | 7.340e-02 | AFH14 AT3G56870 CHR24 emb1441 EMB2744 DDB1B EDA8 ARF5 BUBR1 ATROPGEF8 SNL1 LEA14 MGP3 PPK1 ATMCM2 ASU1 AT2G28450 ATMAP70-3 CXIP4 AT2G30540 |
| GO:0032502 developmental process | BP | 7.501e-02 | AT5G12350 AFH14 AT3G56870 ATHDH CHR24 WNK4 emb1441 EMB2744 AtPERK8 ANAC087 ATNEK6 ATCLC-E DDB1B EDA8 ARF5 BUBR1 AT1G22060 ELO1 ATATG2 ATROPGEF8 SNL1 LEA14 MGP3 PPK1 ATMCM2 ASU1 CYCB2;4 AT2G28450 ATMAP70-3 CXIP4 AT2G30540 BRIZ1 |
| GO:1902589 single-organism organelle organization | BP | 7.565e-02 | AFH14 AT3G56870 ATNEK6 DDB1B ARF5 BUBR1 AtCHUP1 AHP2 PPK1 ATMCM2 ASU1 CYCB2;4 ATMAP70-3 CXIP4 |
| GO:0090567 reproductive shoot system development | BP | 7.647e-02 | AT3G56870 CHR24 EDA8 ARF5 BUBR1 SNL1 MGP3 PPK1 ATMCM2 ASU1 AT2G30540 |
| GO:0006996 organelle organization | BP | 7.728e-02 | AT5G12350 AFH14 AT3G56870 AT5G12910 AT5G07630 ATNEK6 DDB1B ARF5 BUBR1 HMG HTA13 AtCHUP1 AHP2 PPK1 ATMCM2 ASU1 CYCB2;4 AT2G28450 ATMAP70-3 CXIP4 |
| GO:0045934 negative regulation of nucleobase-contai... | BP | 7.818e-02 | AT3G56870 ARF5 SNL1 PPK1 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0051172 negative regulation of nitrogen compound... | BP | 7.818e-02 | AT3G56870 ARF5 SNL1 PPK1 ASU1 CYCB2;4 ATMAP70-3 |
| GO:0008064 regulation of actin polymerization or de... | BP | 7.887e-02 | ATNEK6 ARF5 ATMAP70-3 |