4.0:Information of module
cca1-lhy 15m light
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019288 isopentenyl diphosphate biosynthetic pro... BP 3.660e-06
GO:0034660 ncRNA metabolic process BP 4.299e-06
GO:0009240 isopentenyl diphosphate biosynthetic pro... BP 4.894e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044085 cellular component biogenesis BP 1.282e-09
GO:0016051 carbohydrate biosynthetic process BP 6.782e-09
GO:0009069 serine family amino acid metabolic proce... BP 1.229e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cca1-lhy 15m light		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.662 0.048
2 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.449 -0.091
3 247474_at AT5G62280 unknown 0.422 0.102
4 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.375 0.012
5 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.333 0.474
6 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.323 -0.136
7 261844_at AT1G15940 [Tudor/PWWP/MBT superfamily protein] 0.321 0.246
8 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 0.318 -0.032
9 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 0.303 0.099
10 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 0.296 -0.130
11 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR 0.296 0.012
12 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 0.287 -0.011
13 264433_at AT1G61810 BGLU45, beta-glucosidase 45 0.284 -0.046
14 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.282 0.111
15 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.280 -0.005
16 257207_at AT3G14900 EMB3120, EMBRYO DEFECTIVE 3120 0.270 0.033
17 261325_at AT1G44780 unknown 0.260 0.255
18 244938_at ATCG01120 RPS15, chloroplast ribosomal protein S15 0.254 0.338
19 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 0.237 0.017
20 246039_at AT5G19480 unknown 0.231 -0.279
21 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 0.221 0.053
22 248186_at AT5G53880 unknown 0.219 -0.287
23 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.217 0.080
24 262958_at AT1G54410 AtHIRD11, HIRD11, dehydrin 11kDa 0.216 -0.034
25 244983_at ATCG00790 RPL16, ribosomal protein L16 0.211 0.210
26 265330_at AT2G18440 GUT15, GENE WITH UNSTABLE TRANSCRIPT 15 0.210 0.038
27 266244_at AT2G27740 unknown 0.208 0.026
28 259595_at AT1G28050 BBX13, B-box domain protein 13 0.205 0.062
29 245952_at AT5G28500 unknown 0.204 0.110
30 258157_at AT3G18100 AtMYB4R1, myb domain protein 4R1, MYB4R1, myb domain protein 4r1 0.203 -0.075
31 249203_at AT5G42590 CYP71A16, cytochrome P450, family 71, subfamily A, polypeptide 16, MRO, marneral oxidase 0.202 0.101
32 249409_at AT5G40340 [Tudor/PWWP/MBT superfamily protein] 0.201 0.253
33 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.195 0.190
34 248394_at AT5G52070 [Agenet domain-containing protein] 0.192 0.087
35 245252_at AT4G17500 ATERF-1, ethylene responsive element binding factor 1, ERF-1, ethylene responsive element binding factor 1 0.188 -0.017
36 252072_at AT3G51710 [D-mannose binding lectin protein with Apple-like carbohydrate-binding domain] 0.187 0.005
37 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.184 0.026
38 250179_at AT5G14440 [Surfeit locus protein 2 (SURF2)] 0.184 -0.155
39 255429_at AT4G03410 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.177 0.064
40 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.167 0.111
41 247540_at AT5G61590 [Integrase-type DNA-binding superfamily protein] 0.166 -0.137
42 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 0.158 -0.078
43 249927_at AT5G19220 ADG2, ADP GLUCOSE PYROPHOSPHORYLASE 2, APL1, ADP glucose pyrophosphorylase large subunit 1 0.157 -0.198
44 248070_at AT5G55660 [DEK domain-containing chromatin associated protein] 0.152 0.040
45 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.150 -0.081
46 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.150 0.701
47 252464_at AT3G47160 [RING/U-box superfamily protein] 0.149 -0.048
48 251463_at AT3G59800 unknown 0.148 0.081
49 250987_at AT5G02860 [Pentatricopeptide repeat (PPR) superfamily protein] 0.146 0.032
50 259841_at AT1G52200 [PLAC8 family protein] 0.145 0.166
51 256332_at AT1G76890 AT-GT2, GT2 0.145 -0.052
52 260411_at AT1G69890 unknown 0.144 0.071
53 259959_at AT1G53720 ATCYP59, CYCLOPHILIN 59, CYP59, cyclophilin 59 0.143 0.231
54 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.142 0.040
55 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.141 0.092
56 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 0.138 -0.166
57 246703_at AT5G28080 WNK9 0.138 -0.140
58 266658_at AT2G25735 unknown 0.138 0.003
59 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 0.136 -0.003
60 258333_at AT3G16000 MFP1, MAR binding filament-like protein 1 0.136 -0.062
61 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 0.133 -0.082
62 254779_at AT4G12760 unknown 0.132 -0.006
63 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.132 0.328
64 249521_at AT5G38690 [Zinc-finger domain of monoamine-oxidase A repressor R1 protein] 0.132 0.174
65 261901_at AT1G80920 AtJ8, AtToc12, translocon at the outer envelope membrane of chloroplasts 12, DJC22, DNA J protein C22, J8, Toc12, translocon at the outer envelope membrane of chloroplasts 12 0.130 0.125
66 264323_at AT1G04180 YUC9, YUCCA 9 0.129 0.104
67 254659_at AT4G18240 ATSS4, ARABIDOPSIS THALIANA STARCH SYNTHASE 4, SS4, starch synthase 4, SSIV, STARCH SYNTHASE 4 0.129 -0.028
68 253571_at AT4G31000 [Calmodulin-binding protein] 0.129 0.209
69 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 0.128 0.118
70 246144_at AT5G20110 [Dynein light chain type 1 family protein] 0.126 -0.071
71 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -1.440 0.013
72 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -1.304 -0.072
73 258575_at AT3G04240 SEC, secret agent -0.586 0.021
74 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -0.511 0.069
75 255049_at AT4G09610 GASA2, GAST1 protein homolog 2 -0.440 0.105
76 262783_at AT1G10850 [Leucine-rich repeat protein kinase family protein] -0.284 -0.022
77 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 -0.283 0.296
78 247812_at AT5G58390 [Peroxidase superfamily protein] -0.273 0.028
79 258576_at AT3G04230 [Ribosomal protein S5 domain 2-like superfamily protein] -0.242 -0.024
80 254770_at AT4G13340 LRX3, leucine-rich repeat/extensin 3 -0.233 0.050
81 264091_at AT1G79110 BRG2, BOI-related gene 2 -0.225 0.228
82 254059_at AT4G25200 ATHSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6, HSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6 -0.219 0.076
83 265566_at AT2G05600 [F-box associated ubiquitination effector family protein] -0.208 -0.109
84 260146_at AT1G52770 [Phototropic-responsive NPH3 family protein] -0.207 -0.072
85 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 -0.203 0.046
86 266738_at AT2G47010 unknown -0.196 -0.462
87 267515_at AT2G45680 TCP9, TCP domain protein 9 -0.188 -0.260
88 253165_at AT4G35320 unknown -0.187 -0.167
89 250435_at AT5G10380 ATRING1, RING1 -0.175 -0.005
90 251058_at AT5G01790 unknown -0.174 0.027
91 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.171 0.044
92 265722_at AT2G40100 LHCB4.3, light harvesting complex photosystem II -0.170 -0.034
93 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.170 0.048
94 259281_at AT3G01140 AtMYB106, myb domain protein 106, MYB106, myb domain protein 106, NOK, NOECK -0.165 0.041
95 251156_at AT3G63060 EDL3, EID1-like 3 -0.162 0.034
96 250657_at AT5G07000 ATST2B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, ST2B, sulfotransferase 2B -0.161 -0.066
97 254635_at AT4G18670 [Leucine-rich repeat (LRR) family protein] -0.157 -0.076
98 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -0.152 -0.009
99 264442_at AT1G27480 [alpha/beta-Hydrolases superfamily protein] -0.150 0.011
100 265978_at AT2G11140 [copia-like retrotransposon family, has a 1.0e-71 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] -0.144 0.018
101 248614_at AT5G49560 [Putative methyltransferase family protein] -0.144 0.079
102 266424_at AT2G41330 [Glutaredoxin family protein] -0.144 -0.050
103 263525_at AT2G24840 AGL61, AGAMOUS-like 61, DIA, DIANA -0.141 -0.039
104 256751_at AT3G27170 ATCLC-B, CLC-B, chloride channel B -0.138 0.017
105 261274_at AT1G26780 AtMYB117, myb domain protein 117, LOF1, LATERAL ORGAN FUSION 1, MYB117, myb domain protein 117 -0.138 -0.014
106 254245_at AT4G23240 CRK16, cysteine-rich RLK (RECEPTOR-like protein kinase) 16 -0.137 -0.115
107 248074_at AT5G55730 FLA1, FASCICLIN-like arabinogalactan 1 -0.137 -0.146
108 249261_at AT5G41710 [Mutator-like transposase family, has a 6.2e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.137 -0.043
109 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.135 -0.038
110 255748_at AT1G32000 unknown -0.132 0.077
111 264582_at AT1G05230 HDG2, homeodomain GLABROUS 2 -0.131 -0.048
112 245033_at AT2G26380 [Leucine-rich repeat (LRR) family protein] -0.131 0.048
113 251271_at AT3G62050 [Putative endonuclease or glycosyl hydrolase] -0.130 0.028
114 262536_at AT1G17100 AtHBP1, HBP1, haem-binding protein 1 -0.129 -0.094
115 251115_at AT5G01400 ESP4, ENHANCED SILENCING PHENOTYPE 4 -0.127 0.144
116 255271_at AT4G05260 [Ubiquitin-like superfamily protein] -0.126 0.167
117 248297_at AT5G53100 [NAD(P)-binding Rossmann-fold superfamily protein] -0.126 -0.122
118 264139_at AT1G78940 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.126 -0.031
119 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 -0.123 -0.265
120 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] -0.122 0.012
121 267503_at AT2G45600 [alpha/beta-Hydrolases superfamily protein] -0.122 -0.080
122 249139_at AT5G43170 AZF3, zinc-finger protein 3, ZF3, zinc-finger protein 3 -0.120 -0.190
123 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 -0.119 0.014
124 260661_at AT1G19500 unknown -0.118 0.067
125 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 -0.117 0.145
126 262947_at AT1G75750 GASA1, GAST1 protein homolog 1 -0.117 -0.054
127 254437_s_at AT3G06433 [pseudogene] -0.116 0.077
128 265937_at AT2G19610 [RING/U-box superfamily protein] -0.116 -0.134
129 248400_at AT5G52020 [Integrase-type DNA-binding superfamily protein] -0.115 0.075
130 266479_at AT2G31160 LSH3, LIGHT SENSITIVE HYPOCOTYLS 3, OBO1, ORGAN BOUNDARY 1 -0.115 -0.171
131 255694_at AT4G00050 UNE10, unfertilized embryo sac 10 -0.115 0.167
132 246236_at AT4G36470 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.114 -0.128
133 251416_at AT3G60400 SHOT1, suppressor of hot1-4 1 -0.114 -0.097
134 261089_at AT1G07570 APK1, APK1A -0.113 0.077
135 256960_at AT3G13510 unknown -0.113 0.104
136 266007_at AT2G37380 MAKR3, MEMBRANE-ASSOCIATED KINASE REGULATOR 3 -0.112 -0.003
137 257949_at AT3G21750 UGT71B1, UDP-glucosyl transferase 71B1 -0.112 0.077
138 254856_at AT4G12160 [pseudogene] -0.111 -0.053
139 255123_at AT4G08530 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.110 0.139