4.0:Information of module
ms35 silique stage 9.10
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 2.196e-03
GO:0055114 oxidation-reduction process BP 4.018e-03
GO:0009684 indoleacetic acid biosynthetic process BP 4.329e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 4.448e-06
GO:0009750 response to fructose BP 7.239e-06
GO:0009746 response to hexose BP 3.959e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ms35 silique stage 9.10		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 261264_at AT1G26710 unknown 1.598 -0.445
2 262421_at AT1G50290 unknown 1.028 0.230
3 251986_at AT3G53310 [AP2/B3-like transcriptional factor family protein] 0.916 -0.123
4 263023_at AT1G23960 unknown 0.838 0.282
5 249154_at AT5G43410 [Integrase-type DNA-binding superfamily protein] 0.798 -1.167
6 262458_at AT1G11280 [S-locus lectin protein kinase family protein] 0.788 0.213
7 248830_at AT5G47150 [YDG/SRA domain-containing protein] 0.683 -0.276
8 246814_at AT5G27200 ACP5, acyl carrier protein 5 0.665 -1.210
9 246731_at AT5G27630 ACBP5, acyl-CoA binding protein 5, AtACBP5 0.652 0.855
10 247760_at AT5G59130 [Subtilase family protein] 0.596 0.449
11 263258_at AT1G10540 ATNAT8, NAT8, nucleobase-ascorbate transporter 8 0.518 -0.601
12 246870_at AT5G26030 ATFC-I, FC-I, FC1, ferrochelatase 1 0.496 0.892
13 248333_at AT5G52390 [PAR1 protein] 0.477 -0.284
14 253850_at AT4G28090 sks10, SKU5 similar 10 0.476 -0.694
15 259100_at AT3G04880 DRT102, DNA-DAMAGE-REPAIR/TOLERATION 2 0.469 -0.406
16 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.454 -0.726
17 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 0.447 -1.236
18 251808_at AT3G55480 AP-3 beta, beta-subunit of adaptor protein complex 3, PAT2, protein affected trafficking 2, WAT1, WEAK ACID TOLERANT 1 0.442 0.956
19 250412_at AT5G11150 ATVAMP713, vesicle-associated membrane protein 713, VAMP713, VAMP713, vesicle-associated membrane protein 713 0.410 0.091
20 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 0.395 1.362
21 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase 0.395 -0.814
22 249955_at AT5G18840 [Major facilitator superfamily protein] 0.358 -0.506
23 261410_at AT1G07610 MT1C, metallothionein 1C 0.342 1.341
24 250530_at AT5G08630 [DDT domain-containing protein] 0.331 0.106
25 267032_at AT2G38490 CIPK22, CBL-interacting protein kinase 22, SnRK3.19, SNF1-RELATED PROTEIN KINASE 3.19 0.328 -0.451
26 245653_at AT4G13985 FBD1, FBD-associated F-box protein 0.299 -0.072
27 258764_at AT3G10720 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.294 0.691
28 263708_at AT1G09320 [agenet domain-containing protein] 0.286 -0.780
29 254416_at AT4G21380 ARK3, receptor kinase 3, RK3, receptor kinase 3 0.279 -0.229
30 260872_at AT1G21350 [Thioredoxin superfamily protein] 0.272 0.505
31 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.252 -0.311
32 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A 0.250 -1.072
33 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 0.247 -0.793
34 254125_at AT4G24670 TAR2, tryptophan aminotransferase related 2 0.240 0.594
35 250270_at AT5G12980 [Cell differentiation, Rcd1-like protein] 0.231 0.008
36 252363_at AT3G48460 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.231 1.485
37 251752_at AT3G55740 ATPROT2, PROLINE TRANSPORTER 2, PROT2, proline transporter 2 0.228 -0.380
38 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -1.267 -0.803
39 261687_at AT1G47280 unknown -1.191 -0.842
40 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -1.158 -0.311
41 266244_at AT2G27740 unknown -1.099 0.048
42 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -1.093 -0.984
43 265511_at AT2G05540 [Glycine-rich protein family] -0.988 -0.688
44 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.940 -0.344
45 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.929 -0.317
46 249468_at AT5G39650 unknown -0.846 -0.312
47 258195_at AT3G13890 ATMYB26, myb domain protein 26, MS35, MALE STERILE 35, MYB26, myb domain protein 26 -0.813 -0.771
48 265180_at AT1G23590 unknown -0.799 -1.165
49 266196_at AT2G39110 [Protein kinase superfamily protein] -0.779 -0.538
50 264433_at AT1G61810 BGLU45, beta-glucosidase 45 -0.753 -1.190
51 258267_at AT3G15870 [Fatty acid desaturase family protein] -0.671 -0.677
52 263020_at AT1G23880 [NHL domain-containing protein] -0.588 -0.066
53 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] -0.580 -0.165
54 245712_at AT5G04360 ATLDA, limit dextrinase, ATPU1, PULLULANASE 1, LDA, limit dextrinase, PU1, PULLULANASE 1 -0.570 -0.527
55 244961_at ATCG01040 YCF5 -0.509 0.158
56 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.494 -0.392
57 260921_at AT1G21540 [AMP-dependent synthetase and ligase family protein] -0.492 -0.556
58 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -0.480 -0.335
59 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 -0.477 0.492
60 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.463 0.149
61 260685_at AT1G17650 AtGLYR2, GLYR2, glyoxylate reductase 2, GR2, GLYOXYLATE REDUCTASE 2 -0.456 0.106
62 264901_at AT1G23090 AST91, sulfate transporter 91, SULTR3;3 -0.439 0.886
63 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] -0.384 0.410
64 248977_at AT5G45020 [Glutathione S-transferase family protein] -0.380 -0.175
65 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.379 -1.145
66 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 -0.378 -1.074
67 249626_at AT5G37540 [Eukaryotic aspartyl protease family protein] -0.373 -0.327
68 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -0.364 -0.299
69 264824_at AT1G03420 Sadhu4-2, sadhu non-coding retrotransposon 4-2 -0.363 -0.178
70 255061_at AT4G08930 APRL6, APR-like 6, ATAPRL6, APR-like 6 -0.362 0.394
71 257067_at AT3G18270 pseudogene -0.357 0.246
72 265350_at AT2G22620 [Rhamnogalacturonate lyase family protein] -0.355 -1.257
73 250391_at AT5G10850 [similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1)] -0.353 -0.169