4.0:Information of module
msh1 recA3 untreated
In comparison with Col-0 under 4 days salt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006839 mitochondrial transport BP 1.607e-13
GO:0007005 mitochondrion organization BP 1.081e-12
GO:0006626 protein targeting to mitochondrion BP 2.291e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019915 lipid storage BP 5.853e-04
GO:0071554 cell wall organization or biogenesis BP 6.510e-04
GO:0009664 plant-type cell wall organization BP 1.774e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
msh1 recA3 untreated		 Log2 signal ratio
Col-0 under 4 days salt
1 263402_at AT2G04050 [MATE efflux family protein] 1.184 0.792
2 266752_at AT2G47000 ABCB4, ATP-binding cassette B4, AtABCB4, ATPGP4, ARABIDOPSIS P-GLYCOPROTEIN 4, MDR4, MULTIDRUG RESISTANCE 4, PGP4, P-GLYCOPROTEIN 4 0.918 0.581
3 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.796 0.289
4 250090_at AT5G17330 GAD, glutamate decarboxylase, GAD1, GLUTAMATE DECARBOXYLASE 1 0.740 0.186
5 263401_at AT2G04070 [MATE efflux family protein] 0.711 0.295
6 265668_at AT2G32020 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.698 0.677
7 266729_at AT2G03130 [Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein] 0.686 0.079
8 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 0.675 0.512
9 260522_x_at AT2G41730 unknown 0.663 0.526
10 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.661 0.187
11 254419_at AT4G21490 NDB3, NAD(P)H dehydrogenase B3 0.556 0.113
12 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.546 1.014
13 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 0.530 0.379
14 265428_at AT2G20720 [Pentatricopeptide repeat (PPR) superfamily protein] 0.483 0.397
15 258934_at AT3G10140 RECA3, RECA homolog 3 0.478 -0.087
16 246584_at AT5G14730 unknown 0.459 0.375
17 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.440 0.281
18 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.434 0.638
19 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 0.418 0.731
20 246282_at AT4G36580 [AAA-type ATPase family protein] 0.404 0.090
21 263515_at AT2G21640 unknown 0.400 0.314
22 246461_at AT5G16930 [AAA-type ATPase family protein] 0.399 0.093
23 245879_at AT5G09420 AtmtOM64, ATTOC64-V, translocon at the outer membrane of chloroplasts 64-V, MTOM64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, OM64, outer membrane 64, TOC64-V, translocon at the outer membrane of chloroplasts 64-V 0.367 0.088
24 265030_at AT1G61610 [S-locus lectin protein kinase family protein] 0.360 0.412
25 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.343 -0.012
26 257317_at ATMG01060 ORF107G 0.339 -0.064
27 252281_at AT3G49320 [Metal-dependent protein hydrolase] 0.333 0.116
28 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.323 0.522
29 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.317 0.085
30 247612_at AT5G60730 [Anion-transporting ATPase] 0.291 -0.055
31 258397_at AT3G15357 unknown 0.290 0.161
32 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] 0.277 0.174
33 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 0.273 0.319
34 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.268 0.013
35 247855_at AT5G58210 [hydroxyproline-rich glycoprotein family protein] 0.268 0.149
36 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 0.263 0.288
37 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.263 0.618
38 262491_at AT1G21650 SECA2 0.262 0.065
39 259672_at AT1G68990 MGP3, male gametophyte defective 3 0.262 0.108
40 258871_at AT3G03060 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.261 0.035
41 260664_at AT1G19510 ATRL5, RAD-like 5, RL5, RAD-like 5, RSM4, RADIALIS-LIKE SANT/MYB 4 0.260 0.018
42 265147_at AT1G51380 [DEA(D/H)-box RNA helicase family protein] 0.259 -0.049
43 248101_at AT5G55200 MGE1, mitochondrial GrpE 1 0.251 0.185
44 262586_at AT1G15480 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.248 -0.022
45 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.242 0.282
46 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 0.241 -0.019
47 244903_at ATMG00660 ORF149 0.236 -0.267
48 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.231 0.487
49 256416_at AT3G11050 ATFER2, ferritin 2, FER2, ferritin 2 0.225 0.163
50 250679_at AT5G06550 JMJ22, Jumonji domain-containing protein 22 0.225 0.032
51 251455_at AT3G60100 CSY5, citrate synthase 5 0.224 0.041
52 249870_at AT5G23080 TGH, TOUGH 0.215 0.120
53 244906_at ATMG00690 ORF240A 0.212 0.156
54 267011_at AT2G39230 LOJ, LATERAL ORGAN JUNCTION 0.210 0.006
55 251800_at AT3G55510 RBL, REBELOTE 0.209 -0.056
56 264460_at AT1G10170 ATNFXL1, NF-X-like 1, NFXL1, NF-X-like 1 0.205 0.273
57 256107_at AT1G16830 [Pentatricopeptide repeat (PPR) superfamily protein] 0.205 -0.022
58 252864_at AT4G39740 HCC2, homologue of copper chaperone SCO1 2 0.203 0.046
59 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.202 0.328
60 252355_at AT3G48250 BIR6, Buthionine sulfoximine-insensitive roots 6 0.199 -0.004
61 251564_at AT3G58160 ATMYOS3, ATXIJ, MYOSIN XI J, MYA3, MYOSIN A3, XI-16, MYOSIN XI-16, XIJ 0.195 -0.085
62 247989_at AT5G56350 [Pyruvate kinase family protein] 0.194 0.144
63 255278_at AT4G04940 [transducin family protein / WD-40 repeat family protein] 0.186 0.002
64 257334_at ATMG01370 ORF111D 0.185 -0.223
65 247676_at AT5G59980 AtRPP30, GAF1, GAMETOPHYTE DEFECTIVE 1, RPP30 0.177 0.058
66 253013_at AT4G37910 mtHsc70-1, mitochondrial heat shock protein 70-1 0.177 0.123
67 254778_at AT4G12750 [Homeodomain-like transcriptional regulator] 0.177 0.103
68 248228_at AT5G53800 unknown 0.175 0.132
69 260948_at AT1G06100 [Fatty acid desaturase family protein] -0.501 -0.104
70 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B -0.442 -0.117
71 262902_x_at AT1G59930 [MADS-box family protein] -0.429 -0.432
72 251284_at AT3G61840 unknown -0.393 -0.109
73 261525_at AT1G14330 [Galactose oxidase/kelch repeat superfamily protein] -0.366 0.317
74 251842_at AT3G54580 [Proline-rich extensin-like family protein] -0.318 -0.045
75 262566_at AT1G34310 ARF12, auxin response factor 12 -0.314 -0.093
76 260241_at AT1G63710 CYP86A7, cytochrome P450, family 86, subfamily A, polypeptide 7 -0.301 -0.036
77 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 -0.282 -0.234
78 266211_at AT2G06820 unknown -0.279 -0.005
79 260930_at AT1G02620 [Ras-related small GTP-binding family protein] -0.275 -0.019
80 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 -0.254 0.374
81 265937_at AT2G19610 [RING/U-box superfamily protein] -0.247 -0.030
82 260642_at AT1G53260 [LOCATED IN: endomembrane system] -0.245 -0.031
83 245444_at AT4G16740 ATTPS03, terpene synthase 03, TPS03, terpene synthase 03 -0.244 0.070
84 255140_x_at AT4G08410 [Proline-rich extensin-like family protein] -0.240 -0.075
85 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -0.236 -0.238
86 247762_at AT5G59170 [Proline-rich extensin-like family protein] -0.235 -0.148
87 259578_at AT1G27990 unknown -0.227 -0.019
88 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.226 -0.395
89 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.223 -0.055
90 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.222 0.084
91 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.222 -0.155
92 247128_at AT5G66110 HIPP27, heavy metal associated isoprenylated plant protein 27 -0.222 0.108
93 250327_at AT5G12050 unknown -0.217 -0.709
94 249375_at AT5G40730 AGP24, arabinogalactan protein 24, ATAGP24, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 24 -0.217 0.381
95 252050_at AT3G52550 unknown -0.217 -0.129
96 245794_at AT1G32170 XTH30, xyloglucan endotransglucosylase/hydrolase 30, XTR4, xyloglucan endotransglycosylase 4 -0.215 0.306
97 259235_at AT3G11600 unknown -0.214 0.024
98 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.209 -0.251
99 258005_at AT3G19390 [Granulin repeat cysteine protease family protein] -0.209 0.033
100 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 -0.209 0.613
101 255944_at AT5G28600 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1)] -0.209 -0.001
102 265169_x_at AT1G23720 [Proline-rich extensin-like family protein] -0.208 -0.051
103 256518_at AT1G66080 unknown -0.204 -0.008
104 256548_at AT3G14770 AtSWEET2, SWEET2 -0.203 0.309
105 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 -0.200 -0.300
106 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 -0.200 -0.142
107 250136_at AT5G15380 DRM1, domains rearranged methylase 1 -0.198 0.006
108 262734_at AT1G28640 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.198 -0.018
109 264035_at AT2G03630 unknown -0.197 -0.003
110 262416_at AT1G49390 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.196 -0.064
111 262115_at AT1G02813 unknown -0.195 0.018
112 253317_at AT4G33960 unknown -0.194 -0.157
113 252761_at AT3G42770 [F-box/RNI-like/FBD-like domains-containing protein] -0.193 -0.130
114 252118_at AT3G51400 unknown -0.191 -0.043
115 256094_at AT1G20780 ATPUB44, ARABIDOPSIS THALIANA PLANT U-BOX 44, PUB44, PLANT U-BOX 44, SAUL1, senescence-associated E3 ubiquitin ligase 1 -0.190 -0.012
116 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.189 -0.285
117 251857_at AT3G54770 ARP1, ABA-regulated RNA-binding protein 1 -0.188 -0.066
118 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.187 -0.196
119 260315_at AT1G63820 [CCT motif family protein] -0.185 0.044
120 254258_at AT4G23410 TET5, tetraspanin5 -0.184 -0.149
121 247110_at AT5G65830 ATRLP57, receptor like protein 57, RLP57, receptor like protein 57 -0.184 0.001
122 255160_at AT4G07820 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.183 0.039
123 258540_at AT3G06990 [Cysteine/Histidine-rich C1 domain family protein] -0.183 0.025
124 258030_at AT3G27590 unknown -0.182 -0.176
125 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 -0.182 0.133
126 250808_at AT5G05150 ATATG18E, ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, ATG18E, autophagy-related gene 18E, G18E, autophagy-related gene 18E -0.181 -0.023
127 266766_at AT2G46880 ATPAP14, PAP14, purple acid phosphatase 14 -0.181 -0.004
128 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 -0.180 0.246
129 259590_at AT1G28160 [Integrase-type DNA-binding superfamily protein] -0.180 -0.028
130 265157_at AT1G31030 [non-LTR retrotransposon family (LINE), has a 1.0e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)] -0.178 0.006
131 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.177 -0.032
132 253454_at AT4G31875 unknown -0.177 0.072
133 248931_at AT5G46040 [Major facilitator superfamily protein] -0.177 -0.049
134 245040_at AT2G26520 unknown -0.176 -0.152
135 259589_at AT1G28135 unknown -0.174 -0.003