4.0:Information of module
msh1 recA3 heat shock
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009560 embryo sac egg cell differentiation BP 1.274e-03
GO:0007292 female gamete generation BP 1.388e-03
GO:0019693 ribose phosphate metabolic process BP 1.741e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 1.428e-05
GO:0009753 response to jasmonic acid BP 7.671e-04
GO:0000165 MAPK cascade BP 9.568e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
msh1 recA3 heat shock		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 263402_at AT2G04050 [MATE efflux family protein] 0.850 0.003
2 266752_at AT2G47000 ABCB4, ATP-binding cassette B4, AtABCB4, ATPGP4, ARABIDOPSIS P-GLYCOPROTEIN 4, MDR4, MULTIDRUG RESISTANCE 4, PGP4, P-GLYCOPROTEIN 4 0.742 0.542
3 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.716 0.238
4 265237_s_at ATMG00470 ORF122A 0.711 -1.202
5 250090_at AT5G17330 GAD, glutamate decarboxylase, GAD1, GLUTAMATE DECARBOXYLASE 1 0.641 0.359
6 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.588 -0.232
7 256442_at AT3G10930 unknown 0.511 -0.497
8 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 0.487 -0.391
9 265668_at AT2G32020 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.450 0.360
10 263401_at AT2G04070 [MATE efflux family protein] 0.410 -0.849
11 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.393 -0.399
12 265428_at AT2G20720 [Pentatricopeptide repeat (PPR) superfamily protein] 0.361 -0.310
13 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.361 0.298
14 257332_at ATMG01350 ORF145C 0.351 -0.887
15 256416_at AT3G11050 ATFER2, ferritin 2, FER2, ferritin 2 0.336 0.228
16 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.325 -0.794
17 263061_at AT2G18190 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.301 -0.474
18 258934_at AT3G10140 RECA3, RECA homolog 3 0.296 0.705
19 254419_at AT4G21490 NDB3, NAD(P)H dehydrogenase B3 0.293 -0.165
20 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.284 0.427
21 252539_at AT3G45730 unknown 0.267 -1.435
22 246461_at AT5G16930 [AAA-type ATPase family protein] 0.260 0.482
23 244958_at ATMG00450 ORF106B 0.259 -0.531
24 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.259 0.252
25 265242_at AT2G07705 unknown 0.258 0.042
26 262459_at AT1G50400 [Eukaryotic porin family protein] 0.243 0.639
27 257317_at ATMG01060 ORF107G 0.226 -1.189
28 257336_at ATMG01410 ORF204, open reading frame 204 0.223 -1.176
29 262124_at AT1G59660 [Nucleoporin autopeptidase] 0.223 0.146
30 257237_at AT3G14890 [phosphoesterase] 0.218 0.435
31 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.212 1.428
32 263707_at AT1G09300 [Metallopeptidase M24 family protein] 0.208 0.084
33 255193_at AT4G07400 VFB3, VIER F-box proteine 3 0.207 0.460
34 257401_at AT1G23550 SRO2, similar to RCD one 2 0.203 -0.017
35 260688_at AT1G17665 unknown 0.202 -0.925
36 253019_at AT4G38010 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.201 0.461
37 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.195 0.127
38 244903_at ATMG00660 ORF149 0.193 0.112
39 247707_at AT5G59450 [GRAS family transcription factor] 0.192 0.196
40 262624_at AT1G06450 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.192 0.104
41 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 -0.427 0.770
42 261069_at AT1G07410 ATRAB-A2B, ARABIDOPSIS RAB GTPASE HOMOLOG A2B, ATRABA2B, RAB GTPase homolog A2B, RAB-A2B, RAB GTPASE HOMOLOG A2B, RABA2b, RAB GTPase homolog A2B -0.374 0.387
43 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.374 0.713
44 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.365 -0.562
45 248839_at AT5G46690 bHLH071, beta HLH protein 71 -0.362 0.602
46 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.360 0.449
47 257670_at AT3G20340 unknown -0.333 -0.492
48 248015_at AT5G56370 [F-box/RNI-like/FBD-like domains-containing protein] -0.325 -0.791
49 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.295 0.349
50 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 -0.260 -0.010
51 259235_at AT3G11600 unknown -0.255 0.023
52 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.249 0.231
53 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 -0.248 -0.212
54 258177_at AT3G21660 [UBX domain-containing protein] -0.246 -0.616
55 258836_at AT3G07210 unknown -0.239 0.407
56 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.219 0.047
57 260041_at AT1G68780 [RNI-like superfamily protein] -0.214 0.003
58 249895_at AT5G22500 FAR1, fatty acid reductase 1 -0.212 0.265
59 255878_at AT2G40620 [Basic-leucine zipper (bZIP) transcription factor family protein] -0.209 0.394
60 266836_at AT2G26000 BRIZ2, BRAP2 RING ZnF UBP domain-containing protein 2 -0.208 -0.106
61 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.206 -0.305
62 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 -0.204 -0.770
63 264007_at AT2G21140 ATPRP2, proline-rich protein 2, PRP2, proline-rich protein 2 -0.201 0.988
64 247457_at AT5G62170 TRM25, TON1 Recruiting Motif 25 -0.198 -0.481
65 260297_at AT1G80280 [alpha/beta-Hydrolases superfamily protein] -0.196 0.142
66 267555_at AT2G32765 ATSUMO5, SUM5, SUMO 5, SUMO5, small ubiquitinrelated modifier 5 -0.195 0.615
67 246395_at AT1G58170 [Disease resistance-responsive (dirigent-like protein) family protein] -0.191 0.396
68 249290_at AT5G41060 [DHHC-type zinc finger family protein] -0.190 0.506
69 259801_at AT1G72230 [Cupredoxin superfamily protein] -0.190 0.501
70 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.187 0.835
71 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.181 -0.700
72 254544_at AT4G19820 [Glycosyl hydrolase family protein with chitinase insertion domain] -0.181 -0.198
73 261012_at AT1G26600 CLE9, CLAVATA3/ESR-RELATED 9 -0.181 -1.052
74 259377_at AT3G16380 PAB6, poly(A) binding protein 6 -0.180 -0.666
75 249813_at AT5G23940 DCR, DEFECTIVE IN CUTICULAR RIDGES, EMB3009, EMBRYO DEFECTIVE 3009, PEL3, PERMEABLE LEAVES3 -0.180 1.065
76 252950_at AT4G38690 [PLC-like phosphodiesterases superfamily protein] -0.176 0.245
77 247048_at AT5G66560 [Phototropic-responsive NPH3 family protein] -0.176 0.198
78 247069_at AT5G66920 sks17, SKU5 similar 17 -0.173 0.279
79 256671_at AT3G52290 IQD3, IQ-domain 3 -0.172 0.206