4.0:Information of module
arr10 arr12
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 1.642e-08
GO:0009165 nucleotide biosynthetic process BP 2.412e-06
GO:1901293 nucleoside phosphate biosynthetic proces... BP 2.412e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006364 rRNA processing BP 2.476e-31
GO:0016072 rRNA metabolic process BP 2.476e-31
GO:0015979 photosynthesis BP 2.747e-31
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
arr10 arr12		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 245553_at AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 0.420 0.100
2 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.341 0.086
3 256779_at AT3G13784 AtcwINV5, cell wall invertase 5, CWINV5, cell wall invertase 5 0.324 -0.025
4 267502_at AT2G45550 CYP76C4, cytochrome P450, family 76, subfamily C, polypeptide 4 0.316 -0.016
5 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.310 0.024
6 259786_at AT1G29660 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.307 -0.011
7 250576_at AT5G08250 [Cytochrome P450 superfamily protein] 0.284 -0.058
8 245547_at AT4G15300 CYP702A2, cytochrome P450, family 702, subfamily A, polypeptide 2 0.268 0.047
9 257473_at AT1G33840 unknown 0.260 -0.013
10 259197_at AT3G03670 [Peroxidase superfamily protein] 0.239 -0.005
11 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] 0.232 -0.058
12 259660_at AT1G55260 LTPG6, glycosylphosphatidylinositol-anchored lipid protein transfer 6 0.219 -0.098
13 245532_at AT4G15110 CYP97B3, cytochrome P450, family 97, subfamily B, polypeptide 3 0.218 0.027
14 263360_at AT2G03830 GLV6, GOLVEN 6, RGF8, root meristem growth factor 8 0.214 -0.009
15 255550_at AT4G01970 AtSTS, stachyose synthase, RS4, raffinose synthase 4, STS, stachyose synthase 0.210 0.032
16 253657_at AT4G30110 ATHMA2, ARABIDOPSIS HEAVY METAL ATPASE 2, HMA2, heavy metal atpase 2 0.210 -0.004
17 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] 0.206 0.034
18 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 0.206 0.012
19 265611_at AT2G25510 unknown 0.205 0.076
20 249295_at AT5G41280 [Receptor-like protein kinase-related family protein] 0.197 0.049
21 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 0.197 0.023
22 253822_at AT4G28410 RSA1, Root System Architecture 1 0.196 -0.068
23 265468_at AT2G37210 LOG3, LONELY GUY 3 0.195 0.003
24 259632_at AT1G56430 ATNAS4, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, NAS4, nicotianamine synthase 4 0.194 -0.008
25 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] 0.189 -0.002
26 260300_at AT1G80340 ATGA3OX2, ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, GA3OX2, gibberellin 3-oxidase 2, GA4H 0.183 0.026
27 245296_at AT4G16370 oligopeptide transporter 0.179 -0.008
28 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 0.178 0.000
29 247753_at AT5G59070 [UDP-Glycosyltransferase superfamily protein] 0.178 -0.011
30 250205_at AT5G14020 [Endosomal targeting BRO1-like domain-containing protein] 0.174 0.024
31 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 0.173 0.015
32 250157_at AT5G15180 [Peroxidase superfamily protein] 0.173 0.054
33 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.172 -0.030
34 252501_at AT3G46880 unknown 0.172 0.107
35 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] 0.162 0.034
36 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 0.161 0.062
37 257331_at ATMG01330 ORF107H 0.160 0.069
38 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 0.159 0.006
39 263850_at AT2G04480 unknown 0.158 -0.009
40 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.157 0.056
41 257976_at AT3G20840 PLT1, PLETHORA 1 0.154 0.040
42 252149_at AT3G51290 APSR1, Altered Phosphate Starvation Response 1 0.150 -0.039
43 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 0.150 -0.019
44 266276_at AT2G29330 TRI, tropinone reductase 0.146 -0.067
45 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 0.142 -0.022
46 252316_at AT3G48700 ATCXE13, carboxyesterase 13, CXE13, carboxyesterase 13 0.141 -0.043
47 248306_at AT5G52830 ATWRKY27, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY27, WRKY DNA-binding protein 27 0.139 0.062
48 262743_at AT1G29020 [Calcium-binding EF-hand family protein] 0.138 0.064
49 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.138 0.052
50 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] 0.138 0.024
51 254979_at AT4G10550 [Subtilase family protein] 0.132 0.027
52 262396_at AT1G49470 unknown 0.131 0.024
53 245552_at AT4G15360 CYP705A3, cytochrome P450, family 705, subfamily A, polypeptide 3 0.130 0.005
54 255612_at AT4G01240 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.129 -0.029
55 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 0.127 -0.010
56 266756_at AT2G46950 CYP709B2, cytochrome P450, family 709, subfamily B, polypeptide 2 0.125 0.007
57 254902_at AT4G11550 [Cysteine/Histidine-rich C1 domain family protein] 0.125 0.054
58 248374_at AT5G51870 AGL71, AGAMOUS-like 71 0.124 0.091
59 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.124 -0.043
60 256507_at AT1G75150 unknown 0.123 0.049
61 245242_at AT1G44446 ATCAO, ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, CAO, CHLOROPHYLL A OXYGENASE, CH1, CHLORINA 1 0.122 -0.108
62 253054_at AT4G37580 COP3, CONSTITUTIVE PHOTOMORPHOGENIC 3, HLS1, HOOKLESS 1, UNS2, UNUSUAL SUGAR RESPONSE 2 0.120 0.016
63 262758_at AT1G10780 [F-box/RNI-like superfamily protein] 0.119 -0.030
64 250734_at AT5G06270 unknown 0.116 0.017
65 252240_at AT3G50010 [Cysteine/Histidine-rich C1 domain family protein] 0.115 -0.062
66 260199_at AT1G67590 [Remorin family protein] 0.114 0.102
67 260043_at AT1G41770 unknown 0.113 0.035
68 248976_at AT5G44930 ARAD2, ARABINAN DEFICIENT 2 0.111 -0.024
69 257113_at AT3G20130 CYP705A22, cytochrome P450, family 705, subfamily A, polypeptide 22, GPS1, gravity persistence signal 1 0.110 0.037
70 260490_at AT1G51500 ABCG12, ATP-binding cassette G12, AtABCG12, ATWBC12, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, CER5, ECERIFERUM 5, D3, WBC12, WHITE-BROWN COMPLEX 12 0.110 -0.011
71 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 0.110 0.045
72 266770_at AT2G03090 ATEXP15, ATEXPA15, expansin A15, ATHEXP ALPHA 1.3, EXP15, EXPANSIN 15, EXPA15, expansin A15 0.109 0.053
73 247243_at AT5G64700 UMAMIT21, Usually multiple acids move in and out Transporters 21 0.107 0.039
74 251062_at AT5G01840 ATOFP1, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, OFP1, ovate family protein 1 0.107 -0.008
75 262777_at AT1G13030 Atcoilin, COILIN, coilin 0.106 0.051
76 252765_at AT3G42800 unknown 0.105 -0.009
77 247674_at AT5G59930 [Cysteine/Histidine-rich C1 domain family protein] 0.103 -0.028
78 258034_at AT3G21300 [RNA methyltransferase family protein] 0.103 -0.020
79 261298_at AT1G48510 [Surfeit locus 1 cytochrome c oxidase biogenesis protein] 0.102 0.040
80 247882_at AT5G57785 unknown 0.102 0.033
81 258920_at AT3G10520 AHB2, haemoglobin 2, ARATH GLB2, ATGLB2, ARABIDOPSIS HEMOGLOBIN 2, GLB2, HEMOGLOBIN 2, HB2, haemoglobin 2, NSHB2, NON-SYMBIOTIC HAEMOGLOBIN 2 0.101 0.108
82 259027_at AT3G09280 unknown 0.101 0.007
83 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 0.101 0.055
84 257120_at AT3G20200 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.100 0.058
85 247407_at AT5G62900 unknown 0.099 0.035
86 256563_at AT3G29780 RALFL27, ralf-like 27 0.099 -0.060
87 254118_at AT4G24790 [AAA-type ATPase family protein] 0.099 0.009
88 246144_at AT5G20110 [Dynein light chain type 1 family protein] 0.098 -0.003
89 252439_at AT3G47400 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.096 0.025
90 259540_at AT1G20640 NLP4, NIN-like protein 4 0.096 -0.061
91 246461_at AT5G16930 [AAA-type ATPase family protein] 0.095 -0.026
92 245611_at AT4G14390 [Ankyrin repeat family protein] 0.095 -0.039
93 264965_at AT1G60560 [SWIM zinc finger family protein] 0.095 -0.035
94 249832_at AT5G23400 [Leucine-rich repeat (LRR) family protein] 0.095 0.004
95 253500_at AT4G31920 ARR10, response regulator 10, RR10, response regulator 10 -0.954 -0.003
96 264374_at AT2G25180 ARR12, response regulator 12, RR12, response regulator 12 -0.878 -0.027
97 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 -0.657 -0.004
98 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.604 0.069
99 245531_at AT4G15100 scpl30, serine carboxypeptidase-like 30 -0.518 -0.008
100 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] -0.505 0.061
101 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 -0.479 0.042
102 261020_at AT1G26390 [FAD-binding Berberine family protein] -0.467 0.028
103 257163_at AT3G24310 ATMYB71, MYB DOMAIN PROTEIN 71, MYB305, myb domain protein 305 -0.454 0.067
104 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 -0.443 0.071
105 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 -0.430 0.059
106 259640_at AT1G52400 ATBG1, A. THALIANA BETA-GLUCOSIDASE 1, BGL1, BETA-GLUCOSIDASE HOMOLOG 1, BGLU18, beta glucosidase 18 -0.407 0.029
107 256924_at AT3G29590 AT5MAT -0.400 0.008
108 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 -0.336 0.006
109 249775_at AT5G24160 SQE6, squalene monoxygenase 6 -0.335 0.009
110 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A -0.330 0.009
111 251218_at AT3G62410 CP12, CP12 DOMAIN-CONTAINING PROTEIN 1, CP12-2, CP12 domain-containing protein 2 -0.313 0.005
112 267645_at AT2G32860 BGLU33, beta glucosidase 33 -0.310 0.097
113 261769_at AT1G76100 PETE1, plastocyanin 1 -0.301 0.106
114 261005_at AT1G26420 [FAD-binding Berberine family protein] -0.300 -0.002
115 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 -0.292 0.036
116 261021_at AT1G26380 [FAD-binding Berberine family protein] -0.281 0.031
117 266191_at AT2G39040 [Peroxidase superfamily protein] -0.280 -0.025
118 250073_at AT5G17170 ENH1, enhancer of sos3-1 -0.279 -0.001
119 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 -0.279 -0.059
120 251335_at AT3G61400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.272 0.045
121 256164_at AT1G48800 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.269 0.055
122 252441_at AT3G46780 PTAC16, plastid transcriptionally active 16 -0.255 0.026
123 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 -0.254 0.062
124 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 -0.251 0.038
125 267262_at AT2G22990 SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SNG1, sinapoylglucose 1 -0.245 0.029
126 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 -0.243 0.002
127 264580_at AT1G05340 unknown -0.243 0.022
128 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 -0.241 0.005
129 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.237 0.007
130 245228_at AT3G29810 COBL2, COBRA-like protein 2 precursor -0.235 0.010
131 255056_at AT4G09820 AtTT8, BHLH42, TT8, TRANSPARENT TESTA 8 -0.233 -0.030
132 265817_at AT2G18050 HIS1-3, histone H1-3 -0.233 0.034
133 265722_at AT2G40100 LHCB4.3, light harvesting complex photosystem II -0.229 0.016
134 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] -0.229 0.009
135 258923_at AT3G10450 SCPL7, serine carboxypeptidase-like 7 -0.227 0.021
136 249482_at AT5G38980 unknown -0.226 -0.082
137 261218_at AT1G20020 ATLFNR2, LEAF FNR 2, FNR2, ferredoxin-NADP(+)-oxidoreductase 2, LFNR2, leaf-type chloroplast-targeted FNR 2 -0.224 -0.035
138 246652_at AT5G35190 EXT13, extensin 13 -0.223 -0.059
139 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.220 0.020
140 263120_at AT1G78490 CYP708A3, cytochrome P450, family 708, subfamily A, polypeptide 3 -0.219 0.046
141 251036_at AT5G02160 unknown -0.216 -0.005
142 252463_at AT3G47070 [LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope] -0.216 0.044
143 265998_at AT2G24270 ALDH11A3, aldehyde dehydrogenase 11A3 -0.215 -0.021
144 263498_at AT2G42610 LSH10, LIGHT SENSITIVE HYPOCOTYLS 10 -0.215 0.035
145 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] -0.213 -0.004
146 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.212 0.072
147 253182_at AT4G35190 LOG5, LONELY GUY 5 -0.210 0.060
148 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.208 0.029
149 257540_at AT3G21520 AtDMP1, Arabidopsis thaliana DUF679 domain membrane protein 1, DMP1, DUF679 domain membrane protein 1 -0.207 0.025
150 251885_at AT3G54050 HCEF1, high cyclic electron flow 1 -0.205 0.003
151 254453_at AT4G21120 AAT1, amino acid transporter 1, CAT1, CATIONIC AMINO ACID TRANSPORTER 1 -0.204 -0.033
152 260014_at AT1G68010 ATHPR1, HPR, hydroxypyruvate reductase -0.202 0.013
153 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 -0.200 0.030
154 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 -0.200 0.024
155 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 -0.200 0.008
156 262047_at AT1G80160 GLYI7, glyoxylase I 7 -0.199 -0.067
157 255720_at AT1G32060 PRK, phosphoribulokinase -0.198 -0.086
158 265481_at AT2G15960 unknown -0.197 -0.023
159 263761_at AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 -0.195 -0.024
160 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.194 -0.044
161 249203_at AT5G42590 CYP71A16, cytochrome P450, family 71, subfamily A, polypeptide 16, MRO, marneral oxidase -0.193 -0.044
162 266636_at AT2G35370 GDCH, glycine decarboxylase complex H -0.192 0.043
163 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a -0.192 0.009
164 257966_at AT3G19800 unknown -0.191 0.043
165 259838_at AT1G52220 CURT1C, CURVATURE THYLAKOID 1C -0.190 0.015
166 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.189 -0.008
167 256442_at AT3G10930 unknown -0.189 0.054
168 259586_at AT1G28100 unknown -0.188 0.009
169 250669_at AT5G06870 ATPGIP2, ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, PGIP2, polygalacturonase inhibiting protein 2 -0.187 -0.015
170 250688_at AT5G06510 NF-YA10, nuclear factor Y, subunit A10 -0.187 0.010
171 253140_at AT4G35480 RHA3B, RING-H2 finger A3B -0.186 -0.054
172 251157_at AT3G63140 CSP41A, chloroplast stem-loop binding protein of 41 kDa -0.186 -0.076
173 247005_at AT5G67520 adenosine-5'-phosphosulfate (APS) kinase 4 -0.186 -0.043
174 251621_at AT3G57700 [Protein kinase superfamily protein] -0.185 0.080
175 254398_at AT4G21280 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-1, PHOTOSYSTEM II SUBUNIT Q-1, PSBQA, photosystem II subunit QA -0.185 -0.039
176 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor -0.184 0.014
177 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 -0.183 -0.022
178 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein -0.182 0.024
179 263736_at AT1G60000 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.173 -0.034
180 261197_at AT1G12900 GAPA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 -0.172 -0.059
181 245388_at AT4G16410 unknown -0.171 0.038
182 266396_at AT2G38790 unknown -0.171 0.027
183 259625_at AT1G42970 GAPB, glyceraldehyde-3-phosphate dehydrogenase B subunit -0.170 -0.028
184 249047_at AT5G44410 [FAD-binding Berberine family protein] -0.168 0.013
185 255248_at AT4G05180 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-2, photosystem II subunit Q-2, PSII-Q -0.168 0.127
186 255457_at AT4G02770 PSAD-1, photosystem I subunit D-1 -0.167 -0.079
187 261199_at AT1G12950 RSH2, root hair specific 2 -0.164 0.028