4.0:Information of module
Roots Cd
In comparison with Red/FR Light45min help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006305 DNA alkylation BP 4.030e-08
GO:0006306 DNA methylation BP 4.030e-08
GO:0044728 DNA methylation or demethylation BP 4.350e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016197 endosomal transport BP 4.195e-03
GO:0006598 polyamine catabolic process BP 4.622e-03
GO:0009695 jasmonic acid biosynthetic process BP 6.889e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Roots Cd		 Log2 signal ratio
Red/FR Light45min
1 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 0.547 0.018
2 261660_at AT1G18370 ATNACK1, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, HIK, HINKEL, NACK1, NPK1-ACTIVATING KINESIN 1 0.355 0.066
3 261432_at AT1G07680 unknown 0.287 0.006
4 252692_at AT3G43960 [Cysteine proteinases superfamily protein] 0.279 0.000
5 257740_at AT3G27330 [zinc finger (C3HC4-type RING finger) family protein] 0.275 0.029
6 258867_at AT3G03130 unknown 0.263 0.019
7 252077_at AT3G51720 unknown 0.262 0.034
8 247942_at AT5G57120 unknown 0.245 -0.001
9 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 0.235 0.044
10 245568_at AT4G14650 unknown 0.234 0.031
11 257813_at AT3G25100 CDC45, cell division cycle 45 0.228 -0.029
12 252510_at AT3G46270 [receptor protein kinase-related] 0.225 -0.016
13 259930_at AT1G34355 ATPS1, PARALLEL SPINDLE 1, PS1, PARALLEL SPINDLE 1 0.222 -0.026
14 248443_at AT5G51310 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.215 0.027
15 249588_at AT5G37790 [Protein kinase superfamily protein] 0.212 0.024
16 259686_at AT1G63100 [GRAS family transcription factor] 0.209 0.026
17 264895_at AT1G23100 [GroES-like family protein] 0.206 0.003
18 252442_at AT3G46940 DUT1, DUTP-PYROPHOSPHATASE-LIKE 1 0.196 0.000
19 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II 0.192 -0.024
20 253743_at AT4G28940 [Phosphorylase superfamily protein] 0.189 -0.058
21 253156_at AT4G35730 [Regulator of Vps4 activity in the MVB pathway protein] 0.187 -0.022
22 265694_at AT2G24440 [selenium binding] 0.187 0.030
23 255513_at AT4G02060 MCM7, PRL, PROLIFERA 0.184 0.006
24 265909_at AT2G25720 unknown 0.183 -0.007
25 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.181 -0.010
26 248656_at AT5G48460 [Actin binding Calponin homology (CH) domain-containing protein] 0.181 0.012
27 254391_at AT4G21590 ENDO3, endonuclease 3 0.171 0.021
28 259851_at AT1G72250 [Di-glucose binding protein with Kinesin motor domain] 0.170 -0.002
29 247603_at AT5G60930 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.169 0.035
30 254807_at AT4G12700 unknown 0.166 -0.030
31 250068_at AT5G17960 [Cysteine/Histidine-rich C1 domain family protein] 0.166 0.038
32 263327_at AT2G15300 [Leucine-rich repeat protein kinase family protein] 0.163 0.017
33 245861_at AT5G28300 AtGT2L, GT2L, GT-2Like protein 0.161 -0.020
34 263610_at AT2G16230 [O-Glycosyl hydrolases family 17 protein] 0.159 -0.021
35 257725_at AT3G18524 ATMSH2, MSH2, MUTS homolog 2 0.157 -0.021
36 248498_at AT5G50390 EMB3141, EMBRYO DEFECTIVE 3141 0.157 0.042
37 249705_at AT5G35580 [Protein kinase superfamily protein] -0.297 0.010
38 255064_at AT4G08950 EXO, EXORDIUM -0.277 -0.094
39 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A -0.261 0.005
40 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.220 0.006
41 251749_at AT3G55690 unknown -0.200 -0.013
42 248592_at AT5G49280 [hydroxyproline-rich glycoprotein family protein] -0.194 -0.023
43 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.193 0.028
44 251806_at AT3G55370 OBP3, OBF-binding protein 3 -0.192 -0.023
45 260429_at AT1G72450 JAZ6, jasmonate-zim-domain protein 6, TIFY11B, TIFY DOMAIN PROTEIN 11B -0.175 -0.021
46 251861_at AT3G54810 BME3, BLUE MICROPYLAR END 3, BME3-ZF, BLUE MICROPYLAR END 3-ZINC FINGER, GATA8, GATA TRANSCRIPTION FACTOR 8 -0.172 -0.025
47 258025_at AT3G19480 3-PGDH, PGDH3, phosphoglycerate dehydrogenase 3 -0.171 -0.041
48 249522_at AT5G38700 unknown -0.149 -0.018
49 247878_at AT5G57760 unknown -0.148 -0.079
50 262612_at AT1G14150 PnsL2, Photosynthetic NDH subcomplex L 2, PQL1, PsbQ-like 1, PQL2, PsbQ-like 2 -0.143 -0.006
51 246453_at AT5G16830 ATPEP12, ATSYP21, PEP12, PEP12P, SYP21, syntaxin of plants 21 -0.139 0.029
52 257441_at AT2G04020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.136 0.004
53 266953_at AT2G34540 unknown -0.132 0.014
54 258295_at AT3G23400 FIB4, fibrillin 4 -0.131 -0.022
55 246030_at AT5G21105 [Plant L-ascorbate oxidase] -0.131 0.002
56 253798_at AT4G28500 ANAC073, NAC domain containing protein 73, NAC073, NAC domain containing protein 73, SND2, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2 -0.129 -0.006
57 262858_at AT1G14940 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.128 0.015
58 256408_at AT1G66610 [TRAF-like superfamily protein] -0.124 -0.065
59 253332_at AT4G33420 [Peroxidase superfamily protein] -0.121 -0.003
60 264852_at AT2G17480 ATMLO8, MILDEW RESISTANCE LOCUS O 8, MLO8, MILDEW RESISTANCE LOCUS O 8 -0.118 -0.009
61 254794_at AT4G12970 EPFL9, STOMAGEN, STOMAGEN -0.118 -0.001
62 254232_at AT4G23600 CORI3, CORONATINE INDUCED 1, JR2, JASMONIC ACID RESPONSIVE 2 -0.115 -0.033
63 265913_at AT2G25625 unknown -0.114 0.009
64 257894_at AT3G17100 AIF3, ATBS1 Interacting Factor 3 -0.110 0.007
65 246781_at AT5G27350 SFP1 -0.110 0.036
66 262735_at AT1G28630 unknown -0.108 -0.053
67 256799_at AT3G18560 unknown -0.107 -0.003
68 247461_at AT5G62100 ATBAG2, BCL-2-associated athanogene 2, BAG2, BCL-2-associated athanogene 2 -0.106 0.017
69 259849_at AT1G72190 [D-isomer specific 2-hydroxyacid dehydrogenase family protein] -0.105 0.061
70 267305_at AT2G30070 ATKT1, potassium transporter 1, ATKT1P, ATKUP1, KT1, potassium transporter 1, KUP1, POTASSIUM UPTAKE TRANSPORTER 1 -0.101 0.004
71 261146_at AT1G19620 unknown -0.100 -0.009