4.0:Information of module
Starch sheath 5 days MS incubation
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 2.685e-23
GO:0044281 small molecule metabolic process BP 2.898e-20
GO:0006412 translation BP 3.478e-17
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 3.991e-16
GO:0010413 glucuronoxylan metabolic process BP 1.716e-13
GO:0045492 xylan biosynthetic process BP 1.716e-13
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Starch sheath 5 days MS incubation		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg)
1 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 1.332 -1.192
2 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 1.211 1.546
3 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 1.081 -0.380
4 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 1.072 -0.775
5 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 1.069 0.134
6 254818_at AT4G12470 AZI1, azelaic acid induced 1 1.044 -0.745
7 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 1.019 0.048
8 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 1.004 -0.684
9 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 0.978 0.462
10 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.940 1.051
11 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 0.919 0.101
12 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.897 -0.392
13 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.895 -0.361
14 260556_at AT2G43620 [Chitinase family protein] 0.893 0.734
15 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.882 -0.059
16 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.849 -0.004
17 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 0.842 -0.369
18 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.819 0.145
19 256989_at AT3G28580 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.816 -0.312
20 247607_at AT5G60960 PNM1, PPR protein localized to the nucleus and mitochondria 1 0.811 0.332
21 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.776 0.425
22 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.774 0.314
23 267181_at AT2G37760 AKR4C8, Aldo-keto reductase family 4 member C8 0.769 0.905
24 245145_at AT2G45440 DHDPS2, dihydrodipicolinate synthase 2 0.763 0.561
25 259156_at AT3G10380 ATSEC8, SUBUNIT OF EXOCYST COMPLEX 8, SEC8, subunit of exocyst complex 8 0.749 0.502
26 255171_at AT4G07990 [Chaperone DnaJ-domain superfamily protein] 0.747 -0.035
27 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.742 0.589
28 262118_at AT1G02850 BGLU11, beta glucosidase 11 0.742 0.380
29 247164_at AT5G65720 ATNFS1, ARABIDOPSIS THALIANA NITROGEN FIXATION S (NIFS)-LIKE 1, ATNIFS1, NITROGEN FIXATION S HOMOLOG 1, NFS1, nitrogen fixation S (NIFS)-like 1, NIFS1, NITROGEN FIXATION S HOMOLOG 1 0.739 0.013
30 265188_at AT1G23800 ALDH2B, aldehyde dehydrogenase 2B, ALDH2B7, aldehyde dehydrogenase 2B7 0.736 0.945
31 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.732 0.671
32 262947_at AT1G75750 GASA1, GAST1 protein homolog 1 0.730 0.890
33 254649_at AT4G18570 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.729 0.760
34 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] 0.725 0.595
35 259383_at AT3G16470 JAL35, jacalin-related lectin 35, JR1, JASMONATE RESPONSIVE 1 0.724 -0.167
36 256794_at AT3G22230 [Ribosomal L27e protein family] 0.722 0.708
37 256983_at AT3G13470 Cpn60beta2, chaperonin-60beta2 0.701 0.825
38 245357_at AT4G17560 [Ribosomal protein L19 family protein] 0.689 -0.829
39 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.680 0.269
40 267367_at AT2G44210 unknown 0.680 -0.442
41 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.678 0.037
42 247593_at AT5G60790 ABCF1, ATP-binding cassette F1, ATGCN1, ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, GCN1, GENERAL CONTROL NON-REPRESSIBLE 1 0.674 0.015
43 248335_at AT5G52450 [MATE efflux family protein] 0.663 -0.104
44 266256_at AT2G27710 [60S acidic ribosomal protein family] 0.661 1.336
45 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.658 0.393
46 259196_at AT3G03600 RPS2, ribosomal protein S2 0.655 0.336
47 251476_at AT3G59670 unknown 0.639 -0.020
48 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 0.635 0.105
49 265194_at AT1G05010 ACO4, ethylene forming enzyme, EAT1, EFE, ethylene-forming enzyme 0.625 0.178
50 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.619 0.294
51 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] 0.614 0.628
52 246921_at AT5G25080 [Sas10/Utp3/C1D family] 0.612 0.338
53 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 0.612 0.064
54 251847_at AT3G54640 TRP3, TRYPTOPHAN-REQUIRING 3, TSA1, tryptophan synthase alpha chain 0.611 1.146
55 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.610 -0.069
56 254410_at AT4G21410 CRK29, cysteine-rich RLK (RECEPTOR-like protein kinase) 29 0.609 0.726
57 253337_at AT4G33470 ATHDA14, HDA14, histone deacetylase 14 0.608 0.546
58 247654_at AT5G59850 [Ribosomal protein S8 family protein] 0.607 0.849
59 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.594 -0.036
60 250054_at AT5G17860 CAX7, calcium exchanger 7 0.591 -0.429
61 250960_at AT5G02940 unknown 0.591 -0.470
62 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.588 0.017
63 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.588 0.432
64 254387_at AT4G21850 ATMSRB9, methionine sulfoxide reductase B9, MSRB9, methionine sulfoxide reductase B9 0.587 0.137
65 252032_at AT3G52150 PSRP2, plastid-specific ribosomal protein 2 0.576 -0.139
66 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.561 -0.232
67 257538_at AT3G16160 [Tesmin/TSO1-like CXC domain-containing protein] 0.560 0.536
68 265671_at AT2G32060 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.556 1.731
69 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B 0.552 0.102
70 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 0.551 -0.440
71 264495_at AT1G27380 RIC2, ROP-interactive CRIB motif-containing protein 2 -1.476 -0.891
72 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -1.302 -0.288
73 257757_at AT3G18660 GUX1, glucuronic acid substitution of xylan 1, PGSIP1, plant glycogenin-like starch initiation protein 1 -1.297 0.202
74 261395_at AT1G79700 WRI4, WRINKLED 4 -1.173 0.064
75 248121_at AT5G54690 GAUT12, galacturonosyltransferase 12, IRX8, IRREGULAR XYLEM 8, LGT6 -1.125 -0.074
76 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 -1.079 -0.963
77 251297_at AT3G62020 GLP10, germin-like protein 10 -1.037 -0.579
78 253798_at AT4G28500 ANAC073, NAC domain containing protein 73, NAC073, NAC domain containing protein 73, SND2, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2 -1.029 -0.207
79 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -1.027 -0.470
80 261928_at AT1G22480 [Cupredoxin superfamily protein] -1.003 -0.550
81 257233_at AT3G15050 IQD10, IQ-domain 10 -1.003 -0.693
82 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 -0.931 -1.036
83 262438_at AT1G47410 unknown -0.901 0.236
84 249227_at AT5G42180 PER64, peroxidase 64 -0.899 0.682
85 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.860 -0.282
86 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.841 0.134
87 250233_at AT5G13460 IQD11, IQ-domain 11 -0.839 0.570
88 254618_at AT4G18780 ATCESA8, CELLULOSE SYNTHASE 8, CESA8, CELLULOSE SYNTHASE 8, IRX1, IRREGULAR XYLEM 1, LEW2, LEAF WILTING 2 -0.825 -0.016
89 260326_at AT1G63910 AtMYB103, myb domain protein 103, MYB103, myb domain protein 103 -0.807 -0.995
90 262922_at AT1G79420 unknown -0.798 -0.664
91 247812_at AT5G58390 [Peroxidase superfamily protein] -0.786 -0.622
92 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] -0.785 -0.477
93 261425_at AT1G18880 AtNPF2.9, NPF2.9, NRT1/ PTR family 2.9, NRT1.9, nitrate transporter 1.9 -0.756 0.002
94 253010_at AT4G37750 ANT, AINTEGUMENTA, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRG, DRAGON -0.714 -0.530
95 262858_at AT1G14940 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.714 -0.710
96 265545_at AT2G28250 NCRK -0.710 -0.176
97 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.708 -0.108
98 260531_at AT2G47240 CER8, ECERIFERUM 8, LACS1, LONG-CHAIN ACYL-COA SYNTHASE 1 -0.692 0.135
99 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 -0.684 0.629
100 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.680 -0.244
101 256293_at AT1G69440 AGO7, ARGONAUTE7, ZIP, ZIPPY -0.675 -0.305
102 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.665 -0.478
103 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] -0.663 -0.550
104 258040_at AT3G21190 AtMSR1, MSR1, Mannan Synthesis Related 1 -0.661 -0.202
105 253501_at AT4G32010 HSI2-L1, HSL1, HSI2-like 1, VAL2, VP1/ABI3-LIKE 2 -0.660 -0.149
106 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.646 -0.254
107 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.629 0.552
108 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 -0.627 -0.357
109 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 -0.626 -0.854
110 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] -0.625 -0.553
111 247663_at AT5G60110 APUM18, pumilio 18, PUM18, pumilio 18 -0.620 0.100
112 256926_at AT3G22540 unknown -0.604 0.377
113 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.603 -0.359
114 264559_at AT1G09610 GXM3, glucuronoxylan methyltransferase 3 -0.590 -0.864
115 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] -0.587 -1.087
116 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] -0.574 0.321
117 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.568 -1.116
118 255246_at AT4G05640 unknown -0.561 -0.699
119 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.560 0.795
120 260004_at AT1G67860 unknown -0.557 0.205
121 246487_at AT5G16030 unknown -0.556 0.298
122 248355_at AT5G52340 ATEXO70A2, exocyst subunit exo70 family protein A2, EXO70A2, exocyst subunit exo70 family protein A2 -0.556 -1.190
123 256673_at AT3G52370 FLA15, FASCICLIN-like arabinogalactan protein 15 precursor -0.550 0.288
124 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.549 -0.478
125 245386_at AT4G14010 RALFL32, ralf-like 32 -0.547 0.491
126 245159_at AT2G33100 ATCSLD1, cellulose synthase-like D1, CSLD1, cellulose synthase-like D1, CSLD1, CELLULOSE-SYNTHASE LIKE D1 -0.543 0.542
127 262060_at AT1G80170 [Pectin lyase-like superfamily protein] -0.541 0.018
128 254753_at AT4G13190 [Protein kinase superfamily protein] -0.536 -0.244
129 250653_at AT5G06930 [LOCATED IN: chloroplast] -0.530 -0.410
130 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 -0.529 -0.057
131 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 -0.500 -0.005
132 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 -0.486 0.059
133 251448_at AT3G59845 [Zinc-binding dehydrogenase family protein] -0.485 0.185
134 247522_at AT5G61340 unknown -0.481 0.210
135 265234_at AT2G07721 unknown -0.479 -0.060
136 253580_at AT4G30400 [RING/U-box superfamily protein] -0.469 0.266
137 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] -0.467 -0.964
138 263689_at AT1G26820 RNS3, ribonuclease 3 -0.466 0.712
139 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.462 0.286