4.0:Information of module
Starch sheath 5 days MS incubation
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 2.685e-23
GO:0044281 small molecule metabolic process BP 2.898e-20
GO:0006412 translation BP 3.478e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 3.991e-16
GO:0010413 glucuronoxylan metabolic process BP 1.716e-13
GO:0045492 xylan biosynthetic process BP 1.716e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Starch sheath 5 days MS incubation		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 1.332 -1.263
2 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 1.211 1.581
3 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 1.081 -0.525
4 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 1.072 -0.959
5 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 1.069 -0.051
6 254818_at AT4G12470 AZI1, azelaic acid induced 1 1.044 -0.775
7 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 1.019 0.012
8 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 1.004 -0.936
9 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 0.978 0.404
10 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.940 1.170
11 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 0.919 0.094
12 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.897 -0.307
13 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.895 -0.479
14 260556_at AT2G43620 [Chitinase family protein] 0.893 0.980
15 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.882 -0.281
16 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.849 -0.086
17 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 0.842 -0.355
18 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.819 -0.010
19 256989_at AT3G28580 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.816 -0.276
20 247607_at AT5G60960 PNM1, PPR protein localized to the nucleus and mitochondria 1 0.811 0.394
21 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.776 0.385
22 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.774 0.423
23 267181_at AT2G37760 AKR4C8, Aldo-keto reductase family 4 member C8 0.769 0.929
24 245145_at AT2G45440 DHDPS2, dihydrodipicolinate synthase 2 0.763 0.603
25 259156_at AT3G10380 ATSEC8, SUBUNIT OF EXOCYST COMPLEX 8, SEC8, subunit of exocyst complex 8 0.749 0.476
26 255171_at AT4G07990 [Chaperone DnaJ-domain superfamily protein] 0.747 0.028
27 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.742 0.632
28 262118_at AT1G02850 BGLU11, beta glucosidase 11 0.742 0.379
29 247164_at AT5G65720 ATNFS1, ARABIDOPSIS THALIANA NITROGEN FIXATION S (NIFS)-LIKE 1, ATNIFS1, NITROGEN FIXATION S HOMOLOG 1, NFS1, nitrogen fixation S (NIFS)-like 1, NIFS1, NITROGEN FIXATION S HOMOLOG 1 0.739 0.085
30 265188_at AT1G23800 ALDH2B, aldehyde dehydrogenase 2B, ALDH2B7, aldehyde dehydrogenase 2B7 0.736 1.105
31 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.732 0.775
32 262947_at AT1G75750 GASA1, GAST1 protein homolog 1 0.730 0.860
33 254649_at AT4G18570 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.729 0.829
34 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] 0.725 0.624
35 259383_at AT3G16470 JAL35, jacalin-related lectin 35, JR1, JASMONATE RESPONSIVE 1 0.724 -0.183
36 256794_at AT3G22230 [Ribosomal L27e protein family] 0.722 0.719
37 256983_at AT3G13470 Cpn60beta2, chaperonin-60beta2 0.701 0.906
38 245357_at AT4G17560 [Ribosomal protein L19 family protein] 0.689 -0.715
39 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.680 0.343
40 267367_at AT2G44210 unknown 0.680 -0.436
41 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.678 0.171
42 247593_at AT5G60790 ABCF1, ATP-binding cassette F1, ATGCN1, ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, GCN1, GENERAL CONTROL NON-REPRESSIBLE 1 0.674 0.153
43 248335_at AT5G52450 [MATE efflux family protein] 0.663 -0.092
44 266256_at AT2G27710 [60S acidic ribosomal protein family] 0.661 1.363
45 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.658 0.420
46 259196_at AT3G03600 RPS2, ribosomal protein S2 0.655 0.425
47 251476_at AT3G59670 unknown 0.639 0.002
48 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 0.635 0.113
49 265194_at AT1G05010 ACO4, ethylene forming enzyme, EAT1, EFE, ethylene-forming enzyme 0.625 0.042
50 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.619 0.254
51 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] 0.614 0.592
52 246921_at AT5G25080 [Sas10/Utp3/C1D family] 0.612 0.458
53 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 0.612 0.289
54 251847_at AT3G54640 TRP3, TRYPTOPHAN-REQUIRING 3, TSA1, tryptophan synthase alpha chain 0.611 1.205
55 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.610 -0.177
56 254410_at AT4G21410 CRK29, cysteine-rich RLK (RECEPTOR-like protein kinase) 29 0.609 0.633
57 253337_at AT4G33470 ATHDA14, HDA14, histone deacetylase 14 0.608 0.516
58 247654_at AT5G59850 [Ribosomal protein S8 family protein] 0.607 0.851
59 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.594 0.021
60 250054_at AT5G17860 CAX7, calcium exchanger 7 0.591 -0.419
61 250960_at AT5G02940 unknown 0.591 -0.455
62 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.588 0.028
63 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.588 0.515
64 254387_at AT4G21850 ATMSRB9, methionine sulfoxide reductase B9, MSRB9, methionine sulfoxide reductase B9 0.587 0.244
65 252032_at AT3G52150 PSRP2, plastid-specific ribosomal protein 2 0.576 -0.122
66 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.561 -0.212
67 257538_at AT3G16160 [Tesmin/TSO1-like CXC domain-containing protein] 0.560 0.384
68 265671_at AT2G32060 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.556 1.732
69 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B 0.552 0.154
70 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 0.551 -0.446
71 264495_at AT1G27380 RIC2, ROP-interactive CRIB motif-containing protein 2 -1.476 -0.760
72 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -1.302 -0.379
73 257757_at AT3G18660 GUX1, glucuronic acid substitution of xylan 1, PGSIP1, plant glycogenin-like starch initiation protein 1 -1.297 0.002
74 261395_at AT1G79700 WRI4, WRINKLED 4 -1.173 -0.117
75 248121_at AT5G54690 GAUT12, galacturonosyltransferase 12, IRX8, IRREGULAR XYLEM 8, LGT6 -1.125 -0.154
76 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 -1.079 -1.025
77 251297_at AT3G62020 GLP10, germin-like protein 10 -1.037 -0.747
78 253798_at AT4G28500 ANAC073, NAC domain containing protein 73, NAC073, NAC domain containing protein 73, SND2, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2 -1.029 -0.308
79 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -1.027 -0.432
80 261928_at AT1G22480 [Cupredoxin superfamily protein] -1.003 -0.628
81 257233_at AT3G15050 IQD10, IQ-domain 10 -1.003 -0.639
82 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 -0.931 -1.189
83 262438_at AT1G47410 unknown -0.901 0.105
84 249227_at AT5G42180 PER64, peroxidase 64 -0.899 0.412
85 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.860 -0.285
86 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.841 -0.441
87 250233_at AT5G13460 IQD11, IQ-domain 11 -0.839 0.576
88 254618_at AT4G18780 ATCESA8, CELLULOSE SYNTHASE 8, CESA8, CELLULOSE SYNTHASE 8, IRX1, IRREGULAR XYLEM 1, LEW2, LEAF WILTING 2 -0.825 -0.111
89 260326_at AT1G63910 AtMYB103, myb domain protein 103, MYB103, myb domain protein 103 -0.807 -0.982
90 262922_at AT1G79420 unknown -0.798 -0.516
91 247812_at AT5G58390 [Peroxidase superfamily protein] -0.786 -0.740
92 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] -0.785 -0.628
93 261425_at AT1G18880 AtNPF2.9, NPF2.9, NRT1/ PTR family 2.9, NRT1.9, nitrate transporter 1.9 -0.756 -0.149
94 253010_at AT4G37750 ANT, AINTEGUMENTA, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRG, DRAGON -0.714 -0.493
95 262858_at AT1G14940 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.714 -0.597
96 265545_at AT2G28250 NCRK -0.710 -0.280
97 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.708 -0.013
98 260531_at AT2G47240 CER8, ECERIFERUM 8, LACS1, LONG-CHAIN ACYL-COA SYNTHASE 1 -0.692 0.199
99 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 -0.684 0.673
100 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.680 -0.131
101 256293_at AT1G69440 AGO7, ARGONAUTE7, ZIP, ZIPPY -0.675 -0.289
102 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.665 -0.202
103 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] -0.663 -0.461
104 258040_at AT3G21190 AtMSR1, MSR1, Mannan Synthesis Related 1 -0.661 -0.194
105 253501_at AT4G32010 HSI2-L1, HSL1, HSI2-like 1, VAL2, VP1/ABI3-LIKE 2 -0.660 0.028
106 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.646 -0.044
107 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.629 0.628
108 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 -0.627 -0.398
109 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 -0.626 -0.790
110 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] -0.625 -0.511
111 247663_at AT5G60110 APUM18, pumilio 18, PUM18, pumilio 18 -0.620 0.079
112 256926_at AT3G22540 unknown -0.604 0.440
113 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.603 -0.256
114 264559_at AT1G09610 GXM3, glucuronoxylan methyltransferase 3 -0.590 -0.802
115 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] -0.587 -0.941
116 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] -0.574 0.379
117 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.568 -1.140
118 255246_at AT4G05640 unknown -0.561 -0.626
119 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.560 0.658
120 260004_at AT1G67860 unknown -0.557 0.335
121 246487_at AT5G16030 unknown -0.556 0.229
122 248355_at AT5G52340 ATEXO70A2, exocyst subunit exo70 family protein A2, EXO70A2, exocyst subunit exo70 family protein A2 -0.556 -1.053
123 256673_at AT3G52370 FLA15, FASCICLIN-like arabinogalactan protein 15 precursor -0.550 0.377
124 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.549 -0.405
125 245386_at AT4G14010 RALFL32, ralf-like 32 -0.547 0.547
126 245159_at AT2G33100 ATCSLD1, cellulose synthase-like D1, CSLD1, cellulose synthase-like D1, CSLD1, CELLULOSE-SYNTHASE LIKE D1 -0.543 0.573
127 262060_at AT1G80170 [Pectin lyase-like superfamily protein] -0.541 0.072
128 254753_at AT4G13190 [Protein kinase superfamily protein] -0.536 -0.269
129 250653_at AT5G06930 [LOCATED IN: chloroplast] -0.530 -0.502
130 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 -0.529 -0.366
131 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 -0.500 0.016
132 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 -0.486 -0.003
133 251448_at AT3G59845 [Zinc-binding dehydrogenase family protein] -0.485 0.077
134 247522_at AT5G61340 unknown -0.481 -0.043
135 265234_at AT2G07721 unknown -0.479 -0.143
136 253580_at AT4G30400 [RING/U-box superfamily protein] -0.469 0.339
137 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] -0.467 -0.924
138 263689_at AT1G26820 RNS3, ribonuclease 3 -0.466 0.699
139 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.462 0.302