4.0:Information of module
Starch sheath 5 days MS incubation
In comparison with WT cotyledons help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 2.685e-23
GO:0044281 small molecule metabolic process BP 2.898e-20
GO:0006412 translation BP 3.478e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042546 cell wall biogenesis BP 3.991e-16
GO:0010413 glucuronoxylan metabolic process BP 1.716e-13
GO:0045492 xylan biosynthetic process BP 1.716e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Starch sheath 5 days MS incubation		 Log2 signal ratio
WT cotyledons
1 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 1.332 -0.714
2 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 1.211 0.981
3 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 1.081 -0.350
4 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 1.072 -1.069
5 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 1.069 -0.120
6 254818_at AT4G12470 AZI1, azelaic acid induced 1 1.044 0.208
7 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 1.019 -0.100
8 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 1.004 -0.176
9 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 0.978 0.800
10 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.940 1.252
11 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 0.919 1.217
12 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.897 -1.602
13 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.895 -0.670
14 260556_at AT2G43620 [Chitinase family protein] 0.893 0.048
15 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.882 -0.870
16 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.849 -0.375
17 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 0.842 0.534
18 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.819 -0.440
19 256989_at AT3G28580 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.816 -0.579
20 247607_at AT5G60960 PNM1, PPR protein localized to the nucleus and mitochondria 1 0.811 0.150
21 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.776 1.646
22 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.774 0.193
23 267181_at AT2G37760 AKR4C8, Aldo-keto reductase family 4 member C8 0.769 0.693
24 245145_at AT2G45440 DHDPS2, dihydrodipicolinate synthase 2 0.763 0.934
25 259156_at AT3G10380 ATSEC8, SUBUNIT OF EXOCYST COMPLEX 8, SEC8, subunit of exocyst complex 8 0.749 0.831
26 255171_at AT4G07990 [Chaperone DnaJ-domain superfamily protein] 0.747 -0.075
27 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.742 -0.092
28 262118_at AT1G02850 BGLU11, beta glucosidase 11 0.742 -0.080
29 247164_at AT5G65720 ATNFS1, ARABIDOPSIS THALIANA NITROGEN FIXATION S (NIFS)-LIKE 1, ATNIFS1, NITROGEN FIXATION S HOMOLOG 1, NFS1, nitrogen fixation S (NIFS)-like 1, NIFS1, NITROGEN FIXATION S HOMOLOG 1 0.739 0.059
30 265188_at AT1G23800 ALDH2B, aldehyde dehydrogenase 2B, ALDH2B7, aldehyde dehydrogenase 2B7 0.736 0.942
31 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.732 0.535
32 262947_at AT1G75750 GASA1, GAST1 protein homolog 1 0.730 1.016
33 254649_at AT4G18570 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.729 0.662
34 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] 0.725 0.603
35 259383_at AT3G16470 JAL35, jacalin-related lectin 35, JR1, JASMONATE RESPONSIVE 1 0.724 0.434
36 256794_at AT3G22230 [Ribosomal L27e protein family] 0.722 0.636
37 256983_at AT3G13470 Cpn60beta2, chaperonin-60beta2 0.701 0.908
38 245357_at AT4G17560 [Ribosomal protein L19 family protein] 0.689 0.246
39 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.680 0.059
40 267367_at AT2G44210 unknown 0.680 0.561
41 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.678 -0.645
42 247593_at AT5G60790 ABCF1, ATP-binding cassette F1, ATGCN1, ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, GCN1, GENERAL CONTROL NON-REPRESSIBLE 1 0.674 0.273
43 248335_at AT5G52450 [MATE efflux family protein] 0.663 -0.193
44 266256_at AT2G27710 [60S acidic ribosomal protein family] 0.661 1.275
45 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.658 0.231
46 259196_at AT3G03600 RPS2, ribosomal protein S2 0.655 0.216
47 251476_at AT3G59670 unknown 0.639 -0.086
48 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 0.635 -0.005
49 265194_at AT1G05010 ACO4, ethylene forming enzyme, EAT1, EFE, ethylene-forming enzyme 0.625 0.947
50 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.619 -0.171
51 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] 0.614 0.172
52 246921_at AT5G25080 [Sas10/Utp3/C1D family] 0.612 0.562
53 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 0.612 0.290
54 251847_at AT3G54640 TRP3, TRYPTOPHAN-REQUIRING 3, TSA1, tryptophan synthase alpha chain 0.611 1.129
55 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.610 -0.595
56 254410_at AT4G21410 CRK29, cysteine-rich RLK (RECEPTOR-like protein kinase) 29 0.609 0.733
57 253337_at AT4G33470 ATHDA14, HDA14, histone deacetylase 14 0.608 1.264
58 247654_at AT5G59850 [Ribosomal protein S8 family protein] 0.607 0.761
59 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.594 0.477
60 250054_at AT5G17860 CAX7, calcium exchanger 7 0.591 -0.160
61 250960_at AT5G02940 unknown 0.591 0.454
62 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.588 0.597
63 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.588 0.643
64 254387_at AT4G21850 ATMSRB9, methionine sulfoxide reductase B9, MSRB9, methionine sulfoxide reductase B9 0.587 -0.337
65 252032_at AT3G52150 PSRP2, plastid-specific ribosomal protein 2 0.576 0.418
66 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.561 -0.632
67 257538_at AT3G16160 [Tesmin/TSO1-like CXC domain-containing protein] 0.560 0.334
68 265671_at AT2G32060 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.556 1.570
69 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B 0.552 0.137
70 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 0.551 0.336
71 264495_at AT1G27380 RIC2, ROP-interactive CRIB motif-containing protein 2 -1.476 -1.158
72 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -1.302 -0.006
73 257757_at AT3G18660 GUX1, glucuronic acid substitution of xylan 1, PGSIP1, plant glycogenin-like starch initiation protein 1 -1.297 -0.055
74 261395_at AT1G79700 WRI4, WRINKLED 4 -1.173 -0.484
75 248121_at AT5G54690 GAUT12, galacturonosyltransferase 12, IRX8, IRREGULAR XYLEM 8, LGT6 -1.125 -0.182
76 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 -1.079 -0.665
77 251297_at AT3G62020 GLP10, germin-like protein 10 -1.037 -0.432
78 253798_at AT4G28500 ANAC073, NAC domain containing protein 73, NAC073, NAC domain containing protein 73, SND2, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2 -1.029 -0.129
79 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -1.027 -0.246
80 261928_at AT1G22480 [Cupredoxin superfamily protein] -1.003 -0.795
81 257233_at AT3G15050 IQD10, IQ-domain 10 -1.003 -0.754
82 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 -0.931 -0.944
83 262438_at AT1G47410 unknown -0.901 0.075
84 249227_at AT5G42180 PER64, peroxidase 64 -0.899 -0.287
85 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.860 0.164
86 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.841 -0.248
87 250233_at AT5G13460 IQD11, IQ-domain 11 -0.839 0.279
88 254618_at AT4G18780 ATCESA8, CELLULOSE SYNTHASE 8, CESA8, CELLULOSE SYNTHASE 8, IRX1, IRREGULAR XYLEM 1, LEW2, LEAF WILTING 2 -0.825 0.249
89 260326_at AT1G63910 AtMYB103, myb domain protein 103, MYB103, myb domain protein 103 -0.807 -1.044
90 262922_at AT1G79420 unknown -0.798 -0.795
91 247812_at AT5G58390 [Peroxidase superfamily protein] -0.786 -0.663
92 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] -0.785 -0.952
93 261425_at AT1G18880 AtNPF2.9, NPF2.9, NRT1/ PTR family 2.9, NRT1.9, nitrate transporter 1.9 -0.756 -0.072
94 253010_at AT4G37750 ANT, AINTEGUMENTA, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRG, DRAGON -0.714 -0.144
95 262858_at AT1G14940 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.714 -1.090
96 265545_at AT2G28250 NCRK -0.710 -0.759
97 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.708 -0.435
98 260531_at AT2G47240 CER8, ECERIFERUM 8, LACS1, LONG-CHAIN ACYL-COA SYNTHASE 1 -0.692 0.896
99 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 -0.684 0.799
100 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.680 -0.474
101 256293_at AT1G69440 AGO7, ARGONAUTE7, ZIP, ZIPPY -0.675 -0.099
102 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.665 -1.065
103 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] -0.663 -0.535
104 258040_at AT3G21190 AtMSR1, MSR1, Mannan Synthesis Related 1 -0.661 -0.304
105 253501_at AT4G32010 HSI2-L1, HSL1, HSI2-like 1, VAL2, VP1/ABI3-LIKE 2 -0.660 -0.049
106 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.646 0.350
107 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.629 0.869
108 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 -0.627 -0.227
109 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 -0.626 -0.885
110 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] -0.625 -0.298
111 247663_at AT5G60110 APUM18, pumilio 18, PUM18, pumilio 18 -0.620 -0.087
112 256926_at AT3G22540 unknown -0.604 -0.023
113 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.603 -0.232
114 264559_at AT1G09610 GXM3, glucuronoxylan methyltransferase 3 -0.590 -0.980
115 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] -0.587 -0.234
116 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] -0.574 -0.092
117 256435_at AT3G11180 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.568 -1.326
118 255246_at AT4G05640 unknown -0.561 -1.054
119 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.560 0.683
120 260004_at AT1G67860 unknown -0.557 0.329
121 246487_at AT5G16030 unknown -0.556 1.153
122 248355_at AT5G52340 ATEXO70A2, exocyst subunit exo70 family protein A2, EXO70A2, exocyst subunit exo70 family protein A2 -0.556 -1.292
123 256673_at AT3G52370 FLA15, FASCICLIN-like arabinogalactan protein 15 precursor -0.550 0.497
124 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.549 -0.872
125 245386_at AT4G14010 RALFL32, ralf-like 32 -0.547 0.385
126 245159_at AT2G33100 ATCSLD1, cellulose synthase-like D1, CSLD1, cellulose synthase-like D1, CSLD1, CELLULOSE-SYNTHASE LIKE D1 -0.543 0.079
127 262060_at AT1G80170 [Pectin lyase-like superfamily protein] -0.541 -0.415
128 254753_at AT4G13190 [Protein kinase superfamily protein] -0.536 -0.653
129 250653_at AT5G06930 [LOCATED IN: chloroplast] -0.530 -0.598
130 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 -0.529 -0.095
131 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 -0.500 0.113
132 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 -0.486 -0.156
133 251448_at AT3G59845 [Zinc-binding dehydrogenase family protein] -0.485 0.042
134 247522_at AT5G61340 unknown -0.481 0.000
135 265234_at AT2G07721 unknown -0.479 -0.164
136 253580_at AT4G30400 [RING/U-box superfamily protein] -0.469 0.146
137 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] -0.467 -0.475
138 263689_at AT1G26820 RNS3, ribonuclease 3 -0.466 0.481
139 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.462 0.083