4.0:Information of module
rdr1-1
In comparison with long 10-degree- help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 1.925e-18
GO:0009411 response to UV BP 5.877e-14
GO:0009813 flavonoid biosynthetic process BP 1.099e-13
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019252 starch biosynthetic process BP 2.373e-05
GO:0005982 starch metabolic process BP 9.002e-05
GO:0045893 positive regulation of transcription, DN... BP 1.352e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rdr1-1		 Log2 signal ratio
long 10-degree-
1 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.394 0.511
2 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.380 0.828
3 247719_at AT5G59305 unknown 0.379 0.054
4 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.377 0.194
5 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 0.335 0.328
6 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 0.327 0.337
7 258338_at AT3G16150 ASPGB1, asparaginase B1 0.316 -0.010
8 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.308 0.225
9 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 0.281 -0.114
10 259705_at AT1G77450 anac032, NAC domain containing protein 32, NAC032, NAC domain containing protein 32 0.277 0.027
11 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.269 0.049
12 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.267 0.989
13 252167_at AT3G50560 [NAD(P)-binding Rossmann-fold superfamily protein] 0.264 0.060
14 260773_at AT1G78440 ATGA2OX1, Arabidopsis thaliana gibberellin 2-oxidase 1, GA2OX1, gibberellin 2-oxidase 1 0.260 0.053
15 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.247 0.027
16 254496_at AT4G20070 AAH, allantoate amidohydrolase, ATAAH, allantoate amidohydrolase 0.239 0.108
17 264638_at AT1G65480 FT, FLOWERING LOCUS T, RSB8, REDUCED STEM BRANCHING 8 0.238 0.023
18 251903_at AT3G54120 [Reticulon family protein] 0.234 0.014
19 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] 0.230 0.201
20 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.224 -0.231
21 252661_at AT3G44450 unknown 0.222 0.154
22 251223_at AT3G62610 ATMYB11, myb domain protein 11, MYB11, myb domain protein 11, PFG2, PRODUCTION OF FLAVONOL GLYCOSIDES 2 0.220 0.080
23 249601_at AT5G37980 [Zinc-binding dehydrogenase family protein] 0.218 0.005
24 264021_at AT2G21200 SAUR7, SMALL AUXIN UPREGULATED RNA 7 0.217 -0.004
25 259398_at AT1G17700 PRA1.F1, prenylated RAB acceptor 1.F1 0.216 -0.156
26 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.213 0.165
27 251012_at AT5G02580 unknown 0.212 0.091
28 261059_at AT1G01250 [Integrase-type DNA-binding superfamily protein] 0.211 0.155
29 254759_at AT4G13180 [NAD(P)-binding Rossmann-fold superfamily protein] 0.207 0.053
30 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 0.203 0.076
31 251727_at AT3G56290 unknown 0.201 0.231
32 262214_at AT1G74820 [RmlC-like cupins superfamily protein] 0.201 0.082
33 246966_at AT5G24850 CRY3, cryptochrome 3 0.198 0.359
34 262736_at AT1G28570 [SGNH hydrolase-type esterase superfamily protein] 0.195 0.009
35 259373_at AT1G69160 unknown 0.189 0.066
36 256725_at AT2G34070 TBL37, TRICHOME BIREFRINGENCE-LIKE 37 0.186 0.070
37 254962_at AT4G11050 AtGH9C3, glycosyl hydrolase 9C3, GH9C3, glycosyl hydrolase 9C3 0.184 0.004
38 252502_at AT3G46900 COPT2, copper transporter 2 0.183 0.062
39 247751_at AT5G59050 unknown 0.183 -0.038
40 246827_at AT5G26330 [Cupredoxin superfamily protein] 0.183 0.001
41 263769_at AT2G06390 transposable element gene 0.182 -0.125
42 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 0.181 -0.163
43 250688_at AT5G06510 NF-YA10, nuclear factor Y, subunit A10 0.180 0.061
44 250337_at AT5G11790 NDL2, N-MYC downregulated-like 2 0.179 0.014
45 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 0.178 0.390
46 255787_at AT2G33590 AtCRL1, CRL1, CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 0.177 0.133
47 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 0.176 -0.187
48 260002_at AT1G67940 ABCI17, ATP-binding cassette I17, ATNAP3, non-intrinsic ABC protein 3, AtSTAR1, NAP3, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, NAP3, non-intrinsic ABC protein 3 0.175 0.059
49 256548_at AT3G14770 AtSWEET2, SWEET2 0.175 0.076
50 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase 0.173 0.198
51 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] 0.172 0.284
52 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 0.172 -0.197
53 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B 0.171 0.065
54 265197_at AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 0.171 0.068
55 255694_at AT4G00050 UNE10, unfertilized embryo sac 10 0.170 0.132
56 255413_at AT4G03140 [NAD(P)-binding Rossmann-fold superfamily protein] 0.168 0.004
57 247906_at AT5G57420 IAA33, indole-3-acetic acid inducible 33 0.167 0.070
58 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.167 0.710
59 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.167 0.315
60 245399_at AT4G17340 DELTA-TIP2, TIP2;2, tonoplast intrinsic protein 2;2 0.166 -0.122
61 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.163 0.168
62 251658_at AT3G57020 [Calcium-dependent phosphotriesterase superfamily protein] 0.162 0.304
63 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 0.162 0.029
64 265151_at AT1G51340 [MATE efflux family protein] 0.162 -0.012
65 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase 0.161 -0.166
66 259185_at AT3G01550 ATPPT2, PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2, PPT2, phosphoenolpyruvate (pep)/phosphate translocator 2 0.159 0.266
67 266738_at AT2G47010 unknown 0.156 0.041
68 255576_at AT4G01440 UMAMIT31, Usually multiple acids move in and out Transporters 31 0.154 0.139
69 267127_at AT2G23610 ATMES3, ARABIDOPSIS THALIANA METHYL ESTERASE 3, MES3, methyl esterase 3 0.154 -0.012
70 257815_at AT3G25130 unknown 0.154 -0.024
71 247533_at AT5G61570 [Protein kinase superfamily protein] 0.154 0.037
72 249167_at AT5G42860 unknown 0.153 0.013
73 255763_at AT1G16730 unknown 0.151 0.078
74 267132_at AT2G23420 NAPRT2, nicotinate phosphoribosyltransferase 2 0.151 0.006
75 259228_at AT3G07720 [Galactose oxidase/kelch repeat superfamily protein] 0.151 0.044
76 246844_at AT5G26660 ATMYB86, myb domain protein 86, MYB86, myb domain protein 86 0.149 -0.067
77 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.148 0.128
78 260074_at AT1G73640 AtRABA6a, RAB GTPase homolog A6A, RABA6a, RAB GTPase homolog A6A 0.147 -0.057
79 258719_at AT3G09540 [Pectin lyase-like superfamily protein] 0.147 0.179
80 249306_at AT5G41400 [RING/U-box superfamily protein] 0.145 0.057
81 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.144 0.096
82 249759_at AT5G24380 ATYSL2, YELLOW STRIPE LIKE 2, YSL2, YELLOW STRIPE like 2 0.144 0.027
83 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.144 0.026
84 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.143 0.104
85 262137_at AT1G77920 TGA7, TGACG sequence-specific binding protein 7 0.143 -0.004
86 261138_at AT1G19710 [UDP-Glycosyltransferase superfamily protein] 0.143 0.015
87 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 0.141 0.363
88 255756_at AT1G19940 AtGH9B5, glycosyl hydrolase 9B5, GH9B5, glycosyl hydrolase 9B5 0.141 0.076
89 254424_at AT4G21510 AtFBS2, FBS2, F-box stress induced 2 0.140 0.018
90 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] 0.140 0.130
91 250901_at AT5G03530 ATRAB, ATRAB ALPHA, ATRAB18B, ATRABC2A, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RABC2A, RAB GTPase homolog C2A 0.139 0.028
92 260601_at AT1G55910 ZIP11, zinc transporter 11 precursor 0.139 -0.075
93 248261_at AT5G53280 PDV1, PLASTID DIVISION1 0.139 0.041
94 265224_at AT2G36710 [Pectin lyase-like superfamily protein] 0.138 0.043
95 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.138 0.133
96 248080_at AT5G55380 [MBOAT (membrane bound O-acyl transferase) family protein] 0.138 -0.045
97 261999_at AT1G33800 AtGXMT1, GXM1, glucuronoxylan methyltransferase 1, GXMT1, glucuronoxylan methyltransferase 1 0.138 0.024
98 247716_at AT5G59350 unknown 0.137 0.053
99 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.508 0.011
100 258289_at AT3G23450 unknown -0.495 -0.071
101 267545_at AT2G32690 ATGRP23, GLYCINE-RICH PROTEIN 23, GRP23, glycine-rich protein 23 -0.491 0.085
102 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.462 -0.134
103 262888_at AT1G14790 AtRDR1, ATRDRP1, RDR1, RNA-dependent RNA polymerase 1 -0.462 -0.190
104 253871_at AT4G27440 PORB, protochlorophyllide oxidoreductase B -0.441 -0.014
105 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.403 -0.114
106 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 -0.389 -0.196
107 264610_at AT1G04645 [Plant self-incompatibility protein S1 family] -0.318 -0.008
108 258225_at AT3G15630 unknown -0.305 -0.272
109 257679_at AT3G20470 ATGRP-5, ATGRP5, GRP-5, GLYCINE-RICH PROTEIN 5, GRP5, glycine-rich protein 5 -0.298 0.023
110 258939_at AT3G10020 unknown -0.294 -0.120
111 253421_at AT4G32340 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.293 -0.141
112 265790_at AT2G01170 AtGABP, BAT1, bidirectional amino acid transporter 1, GABP, GABA permease -0.285 0.093
113 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.279 -0.569
114 253830_at AT4G27652 unknown -0.277 0.044
115 255734_at AT1G25550 [myb-like transcription factor family protein] -0.255 0.042
116 256455_at AT1G75190 unknown -0.231 -0.148
117 248752_at AT5G47600 [HSP20-like chaperones superfamily protein] -0.226 0.057
118 251155_at AT3G63160 OEP6, outer envelope protein 6 -0.220 -0.030
119 258254_at AT3G26782 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.216 0.118
120 246289_at AT3G56880 [VQ motif-containing protein] -0.215 0.005
121 251856_at AT3G54720 AMP1, ALTERED MERISTEM PROGRAM 1, AtAMP1, COP2, CONSTITUTIVE MORPHOGENESIS 2, HPT, HAUPTLING, MFO1, Multifolia, PT, PRIMORDIA TIMING -0.210 -0.102
122 245117_at AT2G41560 ACA4, autoinhibited Ca(2+)-ATPase, isoform 4 -0.202 0.006
123 265511_at AT2G05540 [Glycine-rich protein family] -0.202 -0.155
124 262309_at AT1G70820 [phosphoglucomutase, putative / glucose phosphomutase, putative] -0.202 -0.168
125 249357_at AT5G40490 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.202 -0.008
126 255255_at AT4G05070 [Wound-responsive family protein] -0.191 -0.100
127 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.190 -0.069
128 249923_at AT5G19120 [Eukaryotic aspartyl protease family protein] -0.190 -0.243
129 260262_at AT1G68470 [Exostosin family protein] -0.189 0.128
130 263914_at AT2G36400 AtGRF3, growth-regulating factor 3, GRF3, growth-regulating factor 3 -0.187 0.046
131 246929_at AT5G25210 unknown -0.187 -0.106
132 246253_at AT4G37260 ATMYB73, MYB73, myb domain protein 73 -0.185 0.010
133 262656_at AT1G14200 [RING/U-box superfamily protein] -0.185 -0.113
134 267150_at AT2G23510 SDT, spermidine disinapoyl acyltransferase -0.184 0.039
135 252193_at AT3G50060 MYB77, myb domain protein 77 -0.181 0.015
136 249941_at AT5G22270 unknown -0.180 -0.191
137 262698_at AT1G75960 [AMP-dependent synthetase and ligase family protein] -0.180 -0.233
138 250091_at AT5G17340 [Putative membrane lipoprotein] -0.179 0.003
139 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 -0.172 -0.342
140 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.172 -0.126
141 251704_at AT3G56360 unknown -0.171 -0.169
142 245188_at AT1G67660 [Restriction endonuclease, type II-like superfamily protein] -0.170 -0.005
143 258151_at AT3G18080 BGLU44, B-S glucosidase 44 -0.168 -0.008
144 265195_at AT2G36730 [Pentatricopeptide repeat (PPR) superfamily protein] -0.168 0.041
145 245768_at AT1G33590 [Leucine-rich repeat (LRR) family protein] -0.165 -0.075
146 245444_at AT4G16740 ATTPS03, terpene synthase 03, TPS03, terpene synthase 03 -0.163 -0.010
147 260266_at AT1G68520 BBX14, B-box domain protein 14 -0.161 -0.059
148 248350_at AT5G52160 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.160 0.020
149 267497_at AT2G30540 [Thioredoxin superfamily protein] -0.157 -0.090
150 264830_at AT1G03710 [Cystatin/monellin superfamily protein] -0.154 0.028
151 253087_at AT4G36350 ATPAP25, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, PAP25, purple acid phosphatase 25 -0.151 0.016
152 261259_at AT1G26660 [Prefoldin chaperone subunit family protein] -0.151 0.068
153 266589_at AT2G46250 [myosin heavy chain-related] -0.148 -0.107
154 251036_at AT5G02160 unknown -0.148 -0.118
155 250283_at AT5G13270 RARE1, REQUIRED FOR ACCD RNA EDITING 1 -0.147 0.038
156 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] -0.144 0.026
157 250987_at AT5G02860 [Pentatricopeptide repeat (PPR) superfamily protein] -0.143 0.051
158 262569_at AT1G15180 [MATE efflux family protein] -0.143 -0.006
159 249026_at AT5G44785 OSB3, organellar single-stranded DNA binding protein 3 -0.141 0.025
160 265440_at AT2G20960 pEARLI4 -0.140 -0.104
161 256274_at AT3G12080 emb2738, embryo defective 2738 -0.139 0.042
162 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 -0.135 0.048
163 266795_at AT2G03070 MED8, mediator subunit 8 -0.135 -0.014
164 256525_at AT1G66180 [Eukaryotic aspartyl protease family protein] -0.133 -0.113
165 253842_at AT4G27860 MEB1, MEMBRANE OF ER BODY 1 -0.132 -0.108
166 265803_at AT2G18115 [pseudogene] -0.132 0.087
167 248201_at AT5G54180 PTAC15, plastid transcriptionally active 15 -0.131 0.070
168 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] -0.131 0.103
169 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.131 -0.142
170 247216_at AT5G64860 DPE1, disproportionating enzyme -0.131 -0.129
171 255070_at AT4G09020 ATISA3, ISA3, isoamylase 3 -0.131 0.049
172 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.130 0.007
173 263805_at AT2G40400 unknown -0.130 0.197
174 247339_at AT5G63690 [Nucleic acid-binding, OB-fold-like protein] -0.128 0.027
175 263412_at AT2G28720 [Histone superfamily protein] -0.128 0.029
176 248975_at AT5G45040 CYTC6A, cytochrome c6A -0.127 0.012
177 264501_at AT1G09390 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.126 -0.050
178 246568_at AT5G14960 DEL2, DP-E2F-like 2, E2FD, E2L1 -0.124 0.022
179 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 -0.124 0.052
180 253623_at AT4G30570 [Glucose-1-phosphate adenylyltransferase family protein] -0.123 -0.006
181 264155_at AT1G65440 GTB1, global transcription factor group B1 -0.123 -0.007
182 251711_at AT3G56960 PIP5K4, phosphatidyl inositol monophosphate 5 kinase 4 -0.123 -0.043
183 263258_at AT1G10540 ATNAT8, NAT8, nucleobase-ascorbate transporter 8 -0.121 -0.012
184 265031_at AT1G61590 [Protein kinase superfamily protein] -0.121 0.032
185 246212_at AT4G36930 SPT, SPATULA -0.121 -0.021
186 259733_at AT1G77480 [Eukaryotic aspartyl protease family protein] -0.120 -0.080
187 259003_at AT3G02010 [Pentatricopeptide repeat (PPR) superfamily protein] -0.120 0.065
188 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 -0.120 -0.053
189 248871_at AT5G46680 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.120 -0.018
190 255926_at AT1G22190 RAP2.4, related to AP2 4 -0.118 -0.028
191 262284_at AT1G68670 [myb-like transcription factor family protein] -0.118 0.015
192 260217_at AT1G74600 OTP87, organelle transcript processing 87 -0.117 -0.129
193 248228_at AT5G53800 unknown -0.116 0.028
194 253597_at AT4G30690 [Translation initiation factor 3 protein] -0.114 -0.125
195 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 -0.114 0.027