4.0:Information of module
CBF3 100mM NaCl
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009631 cold acclimation BP 3.082e-04
GO:0071214 cellular response to abiotic stimulus BP 3.085e-04
GO:0009415 response to water BP 3.770e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009165 nucleotide biosynthetic process BP 2.124e-12
GO:1901293 nucleoside phosphate biosynthetic proces... BP 2.124e-12
GO:0072594 establishment of protein localization to... BP 5.965e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
CBF3 100mM NaCl		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 263789_at AT2G24560 [GDSL-like Lipase/Acylhydrolase family protein] 1.078 -0.060
2 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 1.070 -0.172
3 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 1.015 -0.085
4 246922_at AT5G25110 CIPK25, CBL-interacting protein kinase 25, SnRK3.25, SNF1-RELATED PROTEIN KINASE 3.25 0.925 -0.058
5 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.906 0.066
6 262760_at AT1G10770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.874 -0.217
7 255608_at AT4G01140 unknown 0.771 -0.038
8 246911_at AT5G25810 tny, TINY 0.726 -0.155
9 250467_at AT5G10100 TPPI, trehalose-6-phosphate phosphatase I 0.709 -0.001
10 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.646 -0.093
11 249601_at AT5G37980 [Zinc-binding dehydrogenase family protein] 0.608 0.024
12 263495_at AT2G42530 COR15B, cold regulated 15b 0.596 -0.061
13 245699_at AT5G04250 [Cysteine proteinases superfamily protein] 0.538 -0.015
14 267429_at AT2G34850 MEE25, maternal effect embryo arrest 25 0.489 -0.037
15 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 0.470 -0.003
16 264989_at AT1G27200 unknown 0.467 -0.048
17 251793_at AT3G55580 [Regulator of chromosome condensation (RCC1) family protein] 0.461 -0.076
18 247776_at AT5G58700 ATPLC4, PLC4, phosphatidylinositol-speciwc phospholipase C4 0.449 0.043
19 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 0.417 -0.097
20 245533_at AT4G15130 ATCCT2, CCT2, phosphorylcholine cytidylyltransferase2 0.350 0.046
21 252573_at AT3G45260 [C2H2-like zinc finger protein] 0.344 0.073
22 262667_at AT1G62810 CuAO1, COPPER AMINE OXIDASE1 0.330 0.054
23 264209_at AT1G22740 ATRABG3B, RAB7, RAB75, RABG3B, RAB GTPase homolog G3B 0.326 -0.081
24 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 0.321 0.012
25 266225_at AT2G28900 ATOEP16-1, outer plastid envelope protein 16-1, ATOEP16-L, OUTER PLASTID ENVELOPE PROTEIN 16-L, OEP16, outer envelope protein 16, OEP16-1, outer plastid envelope protein 16-1 0.313 -0.047
26 258078_at AT3G25870 unknown 0.313 -0.102
27 267199_at AT2G30990 unknown 0.301 0.047
28 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] 0.297 -0.059
29 247582_at AT5G60760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.295 -0.039
30 263352_at AT2G22080 unknown 0.290 -0.062
31 254085_at AT4G24960 ATHVA22D, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22D, HVA22 homologue D 0.290 -0.077
32 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 0.289 0.053
33 256310_at AT1G30360 ERD4, early-responsive to dehydration 4 0.287 0.001
34 248700_at AT5G48400 ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2 0.276 0.108
35 265480_at AT2G15970 ATCOR413-PM1, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, ATCYP19, CYCLOPHILLIN 19, COR413-PM1, cold regulated 413 plasma membrane 1, FL3-5A3, WCOR413, WCOR413-LIKE 0.270 -0.015
36 248817_at AT5G47020 unknown 0.270 -0.001
37 246446_at AT5G17640 ASG1, Abiotic Stress Gene 1 0.267 -0.041
38 245905_at AT5G11090 [serine-rich protein-related] 0.258 0.006
39 266803_at AT2G28930 APK1B, protein kinase 1B, PK1B, protein kinase 1B 0.255 -0.011
40 264841_at AT1G03740 [Protein kinase superfamily protein] 0.248 0.117
41 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.243 0.073
42 249889_at AT5G22540 unknown 0.243 0.103
43 264726_at AT1G22985 CRF7, cytokinin response factor 7 0.242 -0.011
44 263920_at AT2G36410 unknown 0.240 -0.074
45 252205_at AT3G50350 unknown 0.235 -0.067
46 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.232 -0.073
47 252323_at AT3G48530 KING1, SNF1-related protein kinase regulatory subunit gamma 1 0.231 0.001
48 266831_at AT2G22830 SQE2, squalene epoxidase 2 0.230 -0.024
49 260011_at AT1G68110 [ENTH/ANTH/VHS superfamily protein] 0.225 -0.080
50 259516_at AT1G20450 ERD10, EARLY RESPONSIVE TO DEHYDRATION 10, LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45 0.219 0.021
51 263901_at AT2G36320 [A20/AN1-like zinc finger family protein] 0.216 -0.025
52 266946_at AT2G18890 [Protein kinase superfamily protein] 0.216 -0.156
53 259876_at AT1G76700 [DNAJ heat shock N-terminal domain-containing protein] 0.214 0.095
54 262456_at AT1G11260 ATSTP1, SUGAR TRANSPORTER 1, STP1, sugar transporter 1 0.213 -0.007
55 249112_at AT5G43780 APS4 0.212 -0.030
56 253405_at AT4G32800 [Integrase-type DNA-binding superfamily protein] 0.211 -0.058
57 245305_at AT4G17215 [Pollen Ole e 1 allergen and extensin family protein] 0.208 -0.080
58 263195_at AT1G36150 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.204 -0.082
59 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 -1.187 -0.008
60 254574_at AT4G19430 unknown -0.600 -0.075
61 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.564 -0.055
62 248246_at AT5G53200 TRY, TRIPTYCHON -0.562 -0.112
63 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A -0.518 0.021
64 250485_at AT5G09990 PROPEP5, elicitor peptide 5 precursor -0.481 -0.147
65 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -0.458 0.115
66 263515_at AT2G21640 unknown -0.441 0.171
67 265147_at AT1G51380 [DEA(D/H)-box RNA helicase family protein] -0.436 0.009
68 251005_at AT5G02590 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.387 0.090
69 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 -0.358 0.076
70 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 -0.346 -0.026
71 257051_at AT3G15270 SPL5, squamosa promoter binding protein-like 5 -0.344 -0.104
72 248924_at AT5G45960 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.332 -0.213
73 254301_at AT4G22790 [MATE efflux family protein] -0.330 -0.044
74 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 -0.328 -0.035
75 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 -0.314 -0.118
76 264549_at AT1G09440 [Protein kinase superfamily protein] -0.309 -0.014
77 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 -0.308 0.151
78 264895_at AT1G23100 [GroES-like family protein] -0.308 -0.102
79 263039_at AT1G23280 [MAK16 protein-related] -0.297 0.064
80 255028_at AT4G09890 unknown -0.292 -0.127
81 247612_at AT5G60730 [Anion-transporting ATPase] -0.279 -0.011
82 255278_at AT4G04940 [transducin family protein / WD-40 repeat family protein] -0.274 0.004
83 250418_at AT5G11240 [transducin family protein / WD-40 repeat family protein] -0.273 0.029
84 258260_at AT3G26850 [histone-lysine N-methyltransferases] -0.260 -0.076
85 247739_at AT5G59240 [Ribosomal protein S8e family protein] -0.257 -0.004
86 259149_at AT3G10340 PAL4, phenylalanine ammonia-lyase 4 -0.255 0.024
87 253687_at AT4G29520 [LOCATED IN: endoplasmic reticulum, plasma membrane] -0.246 0.064
88 251593_at AT3G57660 NRPA1, nuclear RNA polymerase A1 -0.244 0.116
89 252355_at AT3G48250 BIR6, Buthionine sulfoximine-insensitive roots 6 -0.244 -0.005
90 249253_at AT5G42060 [DEK, chromatin associated protein] -0.243 -0.061
91 261425_at AT1G18880 AtNPF2.9, NPF2.9, NRT1/ PTR family 2.9, NRT1.9, nitrate transporter 1.9 -0.238 0.122
92 266253_at AT2G27840 HD2D, histone deacetylase 2D, HDA13, HISTONE DEACETYLASE 13, HDT04, HDT4 -0.236 -0.074
93 249427_at AT5G39850 [Ribosomal protein S4] -0.230 -0.039
94 259367_at AT1G69070 unknown -0.229 0.135
95 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 -0.228 0.106
96 255647_at AT4G00900 ATECA2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ECA2, ER-type Ca2+-ATPase 2 -0.228 0.166
97 253580_at AT4G30400 [RING/U-box superfamily protein] -0.226 -0.085
98 247604_at AT5G60950 COBL5, COBRA-like protein 5 precursor -0.222 0.047
99 267371_at AT2G44510 [CDK inhibitor P21 binding protein] -0.215 -0.037
100 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 -0.210 -0.030
101 247497_at AT5G61770 PPAN, PETER PAN-like protein -0.209 0.020
102 259444_at AT1G02370 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.207 -0.022
103 256969_at AT3G21080 [ABC transporter-related] -0.205 0.090
104 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.200 -0.195
105 259082_at AT3G04820 [Pseudouridine synthase family protein] -0.197 0.080
106 262553_at AT1G31360 ATRECQ2, ARABIDOPSIS THALIANA RECQ 2, MED34, RECQL2, RECQ helicase L2 -0.194 0.102
107 258396_at AT3G15460 [Ribosomal RNA processing Brix domain protein] -0.188 -0.041
108 253777_at AT4G28450 [nucleotide binding] -0.186 0.043
109 261794_at AT1G16060 ADAP, ARIA-interacting double AP2 domain protein, WRI3, WRINKLED 3 -0.186 -0.092
110 256950_at AT3G19080 [SWIB complex BAF60b domain-containing protein] -0.185 -0.037
111 253598_at AT4G30800 [Nucleic acid-binding, OB-fold-like protein] -0.182 -0.060
112 260363_at AT1G70550 unknown -0.181 -0.088
113 245041_at AT2G26530 AR781 -0.179 0.033
114 246461_at AT5G16930 [AAA-type ATPase family protein] -0.177 0.137
115 267011_at AT2G39230 LOJ, LATERAL ORGAN JUNCTION -0.175 -0.023