4.0:Information of module
cat2-short-day 4d
In comparison with Dark 2day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 6.633e-25
GO:0009404 toxin metabolic process BP 1.876e-23
GO:0009407 toxin catabolic process BP 3.555e-23
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901137 carbohydrate derivative biosynthetic pro... BP 1.253e-07
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 6.771e-06
GO:0009165 nucleotide biosynthetic process BP 8.071e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cat2-short-day 4d		 Log2 signal ratio
Dark 2day ivd
1 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 1.292 3.536
2 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 1.282 3.387
3 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 1.205 1.458
4 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 1.171 0.541
5 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 1.095 -0.879
6 263210_at AT1G10585 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 1.066 -0.585
7 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 1.041 3.542
8 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase 0.878 -0.198
9 251772_at AT3G55920 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.860 -1.359
10 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.856 1.457
11 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 0.855 3.977
12 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.716 1.630
13 266841_at AT2G26150 ATHSFA2, heat shock transcription factor A2, HSFA2, heat shock transcription factor A2 0.715 -2.213
14 247704_at AT5G59510 DVL18, DEVIL 18, RTFL5, ROTUNDIFOLIA like 5 0.673 -1.140
15 265197_at AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 0.671 -0.479
16 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.670 3.787
17 250365_at AT5G11410 [Protein kinase superfamily protein] 0.655 -1.525
18 257670_at AT3G20340 unknown 0.654 8.881
19 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.645 -2.529
20 260522_x_at AT2G41730 unknown 0.640 -1.674
21 250152_at AT5G15120 unknown 0.626 2.417
22 263073_at AT2G17500 [Auxin efflux carrier family protein] 0.622 2.274
23 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 0.605 1.644
24 255543_at AT4G01870 [tolB protein-related] 0.593 4.022
25 259705_at AT1G77450 anac032, NAC domain containing protein 32, NAC032, NAC domain containing protein 32 0.592 1.271
26 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 0.591 0.272
27 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 0.589 -1.851
28 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.585 2.895
29 248607_at AT5G49480 ATCP1, Ca2+-binding protein 1, CP1, Ca2+-binding protein 1 0.562 -1.469
30 246584_at AT5G14730 unknown 0.551 -2.116
31 250054_at AT5G17860 CAX7, calcium exchanger 7 0.537 2.398
32 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.536 0.504
33 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.527 -2.714
34 259979_at AT1G76600 unknown 0.509 2.497
35 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.509 -1.447
36 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.501 2.666
37 255807_at AT4G10270 [Wound-responsive family protein] 0.501 -0.586
38 261618_at AT1G33110 [MATE efflux family protein] 0.500 -2.948
39 262935_at AT1G79410 AtOCT5, organic cation/carnitine transporter5, OCT5, organic cation/carnitine transporter5 0.498 -0.925
40 263473_at AT2G31750 UGT74D1, UDP-glucosyl transferase 74D1 0.483 -0.085
41 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.481 -0.059
42 258805_at AT3G04010 [O-Glycosyl hydrolases family 17 protein] 0.478 2.883
43 266296_at AT2G29420 ATGSTU7, glutathione S-transferase tau 7, GST25, GLUTATHIONE S-TRANSFERASE 25, GSTU7, glutathione S-transferase tau 7 0.474 1.707
44 262719_at AT1G43590 unknown 0.472 1.133
45 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.463 -3.595
46 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.459 -0.251
47 247431_at AT5G62520 SRO5, similar to RCD one 5 0.459 0.603
48 262307_at AT1G71000 [Chaperone DnaJ-domain superfamily protein] 0.448 0.051
49 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 0.443 -3.929
50 245277_at AT4G15550 IAGLU, indole-3-acetate beta-D-glucosyltransferase 0.441 -0.182
51 247287_at AT5G64230 unknown 0.422 1.786
52 251975_at AT3G53230 AtCDC48B, cell division cycle 48B 0.409 -0.140
53 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.405 4.753
54 250910_at AT5G03720 AT-HSFA3, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, HSFA3, heat shock transcription factor A3 0.405 2.268
55 245692_at AT5G04150 BHLH101 0.404 -0.279
56 258349_at AT3G17609 HYH, HY5-homolog 0.396 -6.892
57 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.395 -0.028
58 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.388 -3.766
59 253174_at AT4G35090 CAT2, catalase 2 -0.491 -1.013
60 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.383 -5.471
61 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -0.373 -5.760
62 248867_at AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -0.359 -1.167
63 252309_at AT3G49340 [Cysteine proteinases superfamily protein] -0.278 -3.076
64 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 -0.258 -0.343
65 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] -0.238 -2.649
66 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.235 -3.891
67 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.211 -5.895
68 262811_at AT1G11700 unknown -0.192 -2.509
69 253687_at AT4G29520 [LOCATED IN: endoplasmic reticulum, plasma membrane] -0.191 -3.547
70 261335_at AT1G44800 SIAR1, Siliques Are Red 1, UMAMIT18, Usually multiple acids move in and out Transporters 18 -0.178 -0.151
71 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.159 -2.324
72 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] -0.146 -1.167
73 248011_at AT5G56300 GAMT2, gibberellic acid methyltransferase 2 -0.142 0.051
74 264287_at AT1G61930 unknown -0.131 -1.413
75 265097_at AT1G04020 ATBARD1, BARD1, breast cancer associated RING 1, ROW1 -0.126 -5.819
76 258546_at AT3G07060 emb1974, embryo defective 1974 -0.125 -1.192
77 256150_at AT1G55120 AtcwINV3, 6-fructan exohydrolase, ATFRUCT5, beta-fructofuranosidase 5, FRUCT5, beta-fructofuranosidase 5 -0.120 -0.344
78 264114_at AT2G31270 ATCDT1A, ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, CDT1, ARABIDOPSIS HOMOLOG OF YEAST CDT1, CDT1A, homolog of yeast CDT1 A -0.118 -3.324
79 256293_at AT1G69440 AGO7, ARGONAUTE7, ZIP, ZIPPY -0.118 -2.011
80 253654_at AT4G30060 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.116 -2.166
81 258898_at AT3G05740 RECQI1, RECQ helicase l1 -0.116 -4.835
82 264696_at AT1G70230 AXY4, ALTERED XYLOGLUCAN 4, TBL27, TRICHOME BIREFRINGENCE-LIKE 27 -0.114 -3.304
83 247602_at AT5G60900 RLK1, receptor-like protein kinase 1 -0.113 -3.584
84 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 -0.106 -1.672
85 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] -0.105 -2.545
86 259671_at AT1G52290 AtPERK15, proline-rich extensin-like receptor kinase 15, PERK15, proline-rich extensin-like receptor kinase 15 -0.105 -8.284
87 254245_at AT4G23240 CRK16, cysteine-rich RLK (RECEPTOR-like protein kinase) 16 -0.102 0.183
88 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] -0.101 -0.629
89 262292_at AT1G27595 unknown -0.100 -0.881
90 260270_at AT1G63730 [Disease resistance protein (TIR-NBS-LRR class) family] -0.097 1.710
91 245565_at AT4G14605 MDA1, MTERF DEFECTIVE IN Arabidopsis1 -0.096 0.306
92 259708_at AT1G77420 [alpha/beta-Hydrolases superfamily protein] -0.094 -0.828
93 264666_at AT1G09680 [Pentatricopeptide repeat (PPR) superfamily protein] -0.094 0.021
94 265151_at AT1G51340 [MATE efflux family protein] -0.093 -1.603
95 250485_at AT5G09990 PROPEP5, elicitor peptide 5 precursor -0.092 -3.809
96 265769_at AT2G48090 unknown -0.090 -0.344
97 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] -0.089 -5.054
98 262880_at AT1G64880 [Ribosomal protein S5 family protein] -0.088 -0.954
99 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 -0.088 -1.369
100 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 -0.088 -5.099
101 265978_at AT2G11140 [copia-like retrotransposon family, has a 1.0e-71 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] -0.087 -1.500
102 251418_at AT3G60440 [Phosphoglycerate mutase family protein] -0.083 -5.224
103 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 -0.082 -2.120
104 253175_at AT4G35050 MSI3, MULTICOPY SUPPRESSOR OF IRA1 3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3 -0.081 0.055
105 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY -0.081 -0.783
106 264071_at AT2G27920 SCPL51, serine carboxypeptidase-like 51 -0.079 -1.521
107 251301_at AT3G61880 CYP78A9, cytochrome p450 78a9 -0.079 3.304
108 266110_at AT2G02080 AtIDD4, indeterminate(ID)-domain 4, IDD4, indeterminate(ID)-domain 4 -0.078 0.813
109 251215_at AT3G62510 [protein disulfide isomerase-related] -0.077 0.726
110 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.076 -0.614
111 250222_at AT5G14050 [Transducin/WD40 repeat-like superfamily protein] -0.076 0.129
112 266917_at AT2G45830 DTA2, downstream target of AGL15 2 -0.075 0.696
113 248871_at AT5G46680 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.075 -0.636
114 252247_at AT3G49740 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.074 0.393
115 261587_at AT1G01660 [RING/U-box superfamily protein] -0.073 0.549