4.0:Information of module
rdo3 siliques
In comparison with rdo4 siliques help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 4.047e-13
GO:0009719 response to endogenous stimulus BP 1.613e-12
GO:0042221 response to chemical BP 1.209e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009066 aspartate family amino acid metabolic pr... BP 4.202e-05
GO:0006399 tRNA metabolic process BP 1.551e-04
GO:0009067 aspartate family amino acid biosynthetic... BP 2.149e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rdo3 siliques		 Log2 signal ratio
rdo4 siliques
1 256045_at AT1G07150 MAPKKK13, mitogen-activated protein kinase kinase kinase 13 0.484 0.461
2 263210_at AT1G10585 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.461 0.232
3 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 0.405 0.325
4 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 0.399 0.120
5 260527_at AT2G47270 UPB1, UPBEAT1 0.371 0.140
6 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.344 0.251
7 258339_at AT3G16120 [Dynein light chain type 1 family protein] 0.343 0.449
8 259364_at AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, related to ABI3/VP1 1 0.321 -0.049
9 265796_at AT2G35730 [Heavy metal transport/detoxification superfamily protein ] 0.317 0.234
10 247799_at AT5G58840 [Subtilase family protein] 0.309 0.325
11 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.306 0.316
12 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] 0.284 0.217
13 250157_at AT5G15180 [Peroxidase superfamily protein] 0.278 0.164
14 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.270 -0.173
15 265432_at AT2G20650 FLY2, FLYING SAUCER 2 0.266 0.374
16 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.257 0.161
17 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.252 0.079
18 247679_at AT5G59540 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.238 0.209
19 246485_at AT5G16080 AtCXE17, carboxyesterase 17, CXE17, carboxyesterase 17 0.231 -0.191
20 249564_at AT5G38400 unknown 0.228 0.088
21 248333_at AT5G52390 [PAR1 protein] 0.219 0.267
22 253392_at AT4G32650 ATKC1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, AtLKT1, A. thaliana low-K+-tolerant 1, KAT3, potassium channel in Arabidopsis thaliana 3, KC1 0.215 0.285
23 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.211 0.236
24 265992_at AT2G24130 [Leucine-rich receptor-like protein kinase family protein] 0.210 0.428
25 256252_at AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 0.210 0.082
26 259854_at AT1G72200 [RING/U-box superfamily protein] 0.207 0.051
27 246868_at AT5G26010 [Protein phosphatase 2C family protein] 0.206 0.030
28 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.206 0.013
29 257697_at AT3G12700 NANA, NANA 0.200 0.086
30 248563_at AT5G49690 [UDP-Glycosyltransferase superfamily protein] 0.199 0.222
31 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 0.198 0.033
32 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.198 0.096
33 264554_at AT1G09510 [NAD(P)-binding Rossmann-fold superfamily protein] 0.196 0.359
34 249941_at AT5G22270 unknown 0.188 0.047
35 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.187 0.041
36 246254_at AT4G36450 ATMPK14, mitogen-activated protein kinase 14, MPK14, MPK14, mitogen-activated protein kinase 14 0.185 0.277
37 250909_at AT5G03700 [D-mannose binding lectin protein with Apple-like carbohydrate-binding domain] 0.185 0.189
38 264660_at AT1G09940 HEMA2 0.181 0.071
39 260367_at AT1G69760 unknown 0.175 0.201
40 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.175 0.169
41 264774_at AT1G22890 unknown 0.174 0.204
42 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.171 0.177
43 252573_at AT3G45260 [C2H2-like zinc finger protein] 0.168 0.064
44 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.168 0.002
45 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 0.167 0.098
46 251555_at AT3G58780 AGL1, AGAMOUS-like 1, SHP1, SHATTERPROOF 1 0.166 0.066
47 249757_at AT5G24316 [proline-rich family protein] -0.459 -0.069
48 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 -0.309 -0.044
49 254036_at AT4G25980 [Peroxidase superfamily protein] -0.251 -0.487
50 258338_at AT3G16150 ASPGB1, asparaginase B1 -0.240 -0.077
51 247461_at AT5G62100 ATBAG2, BCL-2-associated athanogene 2, BAG2, BCL-2-associated athanogene 2 -0.209 -0.380
52 259308_at AT3G05180 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.194 -0.216
53 258177_at AT3G21660 [UBX domain-containing protein] -0.185 -0.148
54 256011_at AT1G19230 [Riboflavin synthase-like superfamily protein] -0.184 -0.120
55 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] -0.177 -0.107
56 260133_at AT1G66340 AtETR1, EIN1, ETHYLENE INSENSITIVE 1, ETR, ETHYLENE RESPONSE, ETR1, ETHYLENE RESPONSE 1 -0.173 0.022
57 245713_at AT5G04370 NAMT1 -0.169 -0.209
58 259325_at AT3G05320 [O-fucosyltransferase family protein] -0.161 -0.157
59 264562_at AT1G55760 [BTB/POZ domain-containing protein] -0.160 -0.197
60 249556_at AT5G38195 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.145 0.033
61 262344_at AT1G64060 ATRBOH F, respiratory burst oxidase protein F, ATRBOHF, ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, RBOH F, respiratory burst oxidase protein F, RBOHAP108, RBOHF, RESPIRATORY BURST OXIDASE PROTEIN F -0.140 -0.108
62 251825_at AT3G55100 ABCG17, ATP-binding cassette G17 -0.138 -0.112
63 255538_at AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -0.137 -0.136
64 267549_at AT2G32640 [Lycopene beta/epsilon cyclase protein] -0.127 -0.149
65 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.126 0.065
66 263715_at AT2G20570 GBF's pro-rich region-interacting factor 1 -0.126 -0.041
67 265863_at AT2G01770 ATVIT1, VIT1, vacuolar iron transporter 1 -0.125 -0.260
68 265027_at AT1G24450 NFD2, NUCLEAR FUSION DEFECTIVE 2 -0.124 -0.134
69 256704_at AT3G30280 [HXXXD-type acyl-transferase family protein] -0.123 -0.054
70 250366_at AT5G11420 unknown -0.123 -0.053
71 253241_at AT4G34520 FAE1, FATTY ACID ELONGATION1, KCS18, 3-ketoacyl-CoA synthase 18 -0.121 -0.380
72 261537_at AT1G01800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.120 0.220
73 247686_at AT5G59700 [Protein kinase superfamily protein] -0.119 0.020
74 253375_at AT4G33280 [AP2/B3-like transcriptional factor family protein] -0.116 -0.122
75 251391_at AT3G60910 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.115 -0.029
76 250149_at AT5G14700 [NAD(P)-binding Rossmann-fold superfamily protein] -0.113 -0.137
77 248993_at AT5G45240 [Disease resistance protein (TIR-NBS-LRR class)] -0.112 -0.068
78 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.111 -0.460
79 267376_at AT2G26330 ER, ERECTA, QRP1, QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1 -0.110 -0.161
80 254210_at AT4G23450 AIRP1, ABA Insensitive RING Protein 1, AtAIRP1 -0.110 -0.059
81 266314_at AT2G27040 AGO4, ARGONAUTE 4, OCP11, OVEREXPRESSOR OF CATIONIC PEROXIDASE 11 -0.104 -0.270
82 256769_at AT3G13690 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.104 -0.053
83 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 -0.102 -0.314
84 263829_at AT2G40435 unknown -0.100 -0.276
85 266219_at AT2G28880 ADCS, aminodeoxychorismate synthase, emb1997, embryo defective 1997 -0.098 -0.054
86 260230_at AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 -0.098 -0.069
87 248003_at AT5G56220 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.095 -0.032
88 266303_at AT2G27060 [Leucine-rich repeat protein kinase family protein] -0.094 -0.054
89 258590_at AT3G04280 ARR22, response regulator 22, RR22, response regulator 22 -0.094 -0.378
90 247467_at AT5G62130 [Per1-like family protein] -0.093 -0.064
91 261802_at AT1G30550 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.089 -0.072