4.0:Information of module
JA 24h
In comparison with miR396b overexpressor help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009695 jasmonic acid biosynthetic process BP 2.604e-04
GO:0009694 jasmonic acid metabolic process BP 1.097e-03
GO:1902578 single-organism localization BP 1.208e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0032875 regulation of DNA endoreduplication BP 1.617e-03
GO:0090329 regulation of DNA-dependent DNA replicat... BP 2.139e-03
GO:0050665 hydrogen peroxide biosynthetic process BP 5.389e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
JA 24h		 Log2 signal ratio
miR396b overexpressor
1 259009_at AT3G09260 BGLU23, LEB, LONG ER BODY, PSR3.1, PYK10 1.611 0.033
2 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 1.585 0.138
3 254225_at AT4G23670 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 1.537 0.043
4 259384_at AT3G16450 JAL33, Jacalin-related lectin 33 1.468 0.100
5 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 1.180 0.083
6 245531_at AT4G15100 scpl30, serine carboxypeptidase-like 30 1.146 0.011
7 249971_at AT5G19110 [Eukaryotic aspartyl protease family protein] 1.085 0.060
8 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 1.069 0.144
9 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 1.026 0.029
10 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 0.973 0.053
11 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] 0.845 -0.077
12 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.833 0.021
13 266418_at AT2G38750 ANNAT4, annexin 4, AtANN4 0.827 -0.009
14 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 0.795 0.078
15 256725_at AT2G34070 TBL37, TRICHOME BIREFRINGENCE-LIKE 37 0.784 0.032
16 247266_at AT5G64570 ATBXL4, ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, XYL4, beta-D-xylosidase 4 0.777 0.039
17 261285_at AT1G35720 ANN1, annexin 1, ANNAT1, annexin 1, AtANN1, ATOXY5, OXY5 0.748 0.023
18 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 0.745 0.047
19 267093_at AT2G38170 ATCAX1, CAX1, cation exchanger 1, RCI4, RARE COLD INDUCIBLE 4 0.744 0.070
20 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 0.722 -0.043
21 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.716 0.033
22 245292_at AT4G15093 AtLigB, LigB 0.675 0.001
23 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.637 0.089
24 253629_at AT4G30450 [glycine-rich protein] 0.606 -0.003
25 266269_at AT2G29480 ATGSTU2, glutathione S-transferase tau 2, GST20, GLUTATHIONE S-TRANSFERASE 20, GSTU2, glutathione S-transferase tau 2 0.577 -0.020
26 251235_at AT3G62860 [alpha/beta-Hydrolases superfamily protein] 0.572 0.093
27 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 0.562 0.072
28 250483_at AT5G10300 AtHNL, ATMES5, ARABIDOPSIS THALIANA METHYL ESTERASE 5, HNL, HYDROXYNITRILE LYASE, MES5, methyl esterase 5 0.561 0.022
29 250669_at AT5G06870 ATPGIP2, ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, PGIP2, polygalacturonase inhibiting protein 2 0.555 0.082
30 260541_at AT2G43530 [Scorpion toxin-like knottin superfamily protein] 0.531 0.040
31 262171_at AT1G74950 JAZ2, JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY10B 0.488 0.032
32 258108_at AT3G23570 [alpha/beta-Hydrolases superfamily protein] 0.460 0.083
33 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.452 0.141
34 260943_at AT1G45145 ATH5, THIOREDOXIN H-TYPE 5, ATTRX5, thioredoxin H-type 5, LIV1, LOCUS OF INSENSITIVITY TO VICTORIN 1, TRX-h5, THIOREDOXIN H-TYPE 5, TRX5, thioredoxin H-type 5 0.445 0.112
35 252915_at AT4G38810 [Calcium-binding EF-hand family protein] 0.428 0.112
36 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 0.420 -0.001
37 255246_at AT4G05640 unknown 0.419 -0.021
38 267380_at AT2G26170 CYP711A1, cytochrome P450, family 711, subfamily A, polypeptide 1, MAX1, MORE AXILLARY BRANCHES 1 0.405 0.082
39 266977_at AT2G39420 [alpha/beta-Hydrolases superfamily protein] 0.390 0.085
40 246620_at AT5G36220 CYP81D1, cytochrome P450, family 81, subfamily D, polypeptide 1, CYP91A1, CYTOCHROME P450 91A1 0.387 0.209
41 245756_at AT1G35190 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.375 0.117
42 246462_at AT5G16940 [carbon-sulfur lyases] 0.360 0.035
43 259154_at AT3G10260 [Reticulon family protein] 0.350 0.011
44 245322_at AT4G14815 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.341 -0.019
45 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 0.340 0.065
46 253754_at AT4G29020 [glycine-rich protein] 0.318 0.036
47 261760_at AT1G15600 unknown 0.316 0.116
48 258686_at AT3G07840 [Pectin lyase-like superfamily protein] 0.315 0.027
49 248096_at AT5G55240 ATPXG2, ARABIDOPSIS THALIANA PEROXYGENASE 2 0.315 0.002
50 253710_at AT4G29230 anac075, NAC domain containing protein 75, NAC075, NAC domain containing protein 75 0.313 0.034
51 265216_at AT1G05100 MAPKKK18, mitogen-activated protein kinase kinase kinase 18 0.312 0.041
52 265523_at AT2G06190 [gypsy-like retrotransposon family, has a 5.2e-36 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)] 0.310 0.042
53 258610_at AT3G02875 ILR1, IAA-LEUCINE RESISTANT 1 0.307 -0.008
54 249301_at AT5G41440 [RING/U-box superfamily protein] 0.304 0.045
55 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 0.302 0.028
56 255578_at AT4G01450 UMAMIT30, Usually multiple acids move in and out Transporters 30 0.299 0.180
57 251227_at AT3G62700 ABCC14, ATP-binding cassette C14, ATMRP10, multidrug resistance-associated protein 10, MRP10, multidrug resistance-associated protein 10 0.298 0.026
58 254243_at AT4G23210 CRK13, cysteine-rich RLK (RECEPTOR-like protein kinase) 13 0.290 0.016
59 258308_at AT3G30570 [non-LTR retrotransposon family (LINE), has a 7.9e-38 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)] 0.288 -0.017
60 262726_at AT1G43640 AtTLP5, tubby like protein 5, TLP5, tubby like protein 5 0.288 0.096
61 259366_at AT1G13280 AOC4, allene oxide cyclase 4 0.287 0.072
62 254294_at AT4G23070 ATRBL7, RHOMBOID-like protein 7, RBL7, RHOMBOID-like protein 7 0.284 0.052
63 258942_at AT3G09960 [Calcineurin-like metallo-phosphoesterase superfamily protein] 0.283 -0.096
64 248055_at AT5G55830 LecRK-S.7, L-type lectin receptor kinase S.7 -0.584 -0.051
65 251105_at AT5G01730 ATSCAR4, SCAR4, SCAR family protein 4, WAVE3 -0.521 0.011
66 247051_at AT5G66670 unknown -0.521 0.040
67 262773_at AT1G13220 CRWN2, CROWDED NUCLEI 2, LINC2, LITTLE NUCLEI2 -0.508 -0.043
68 251832_at AT3G55150 ATEXO70H1, exocyst subunit exo70 family protein H1, EXO70H1, exocyst subunit exo70 family protein H1 -0.486 0.111
69 245103_at AT2G41590 unknown -0.450 0.026
70 263474_at AT2G31725 unknown -0.433 -0.060
71 259448_at AT1G13790 FDM4, factor of DNA methylation 4 -0.412 -0.094
72 249837_at AT5G23480 [SWIB/MDM2 domain] -0.390 -0.197
73 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.389 0.039
74 263257_at AT1G10520 AtPol{lambda}, Pol{lambda}, DNA polymerase {lambda} -0.371 -0.053
75 252149_at AT3G51290 APSR1, Altered Phosphate Starvation Response 1 -0.363 -0.133
76 251966_at AT3G53380 LecRK-VIII.1, L-type lectin receptor kinase VIII.1 -0.347 -0.060
77 251887_at AT3G54170 ATFIP37, FKBP12 interacting protein 37, FIP37, FKBP12 interacting protein 37 -0.336 -0.014
78 254779_at AT4G12760 unknown -0.317 -0.001
79 244978_at ATCG00740 RPOA, RNA polymerase subunit alpha -0.315 -0.002
80 260251_at AT1G74250 [DNAJ heat shock N-terminal domain-containing protein] -0.312 0.039
81 253122_at AT4G35987 CaM KMT, calmodulin N-methyltransferase -0.312 -0.025
82 250864_at AT5G03870 [Glutaredoxin family protein] -0.301 -0.106
83 249748_at AT5G24620 [Pathogenesis-related thaumatin superfamily protein] -0.296 0.025
84 250823_at AT5G05180 unknown -0.296 -0.035
85 256789_at AT3G13672 SINA2 -0.295 0.161
86 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 -0.285 -0.049
87 262056_at AT1G80245 [Spc97 / Spc98 family of spindle pole body (SBP) component] -0.276 -0.043
88 245055_at AT2G26470 unknown -0.269 -0.066
89 264801_at AT1G08840 emb2411, embryo defective 2411 -0.258 -0.120
90 247497_at AT5G61770 PPAN, PETER PAN-like protein -0.253 -0.011
91 264818_at AT1G03530 ATNAF1, NAF1, nuclear assembly factor 1 -0.242 -0.064
92 262570_at AT1G15200 [protein-protein interaction regulator family protein] -0.242 -0.008
93 259199_at AT3G08980 [Peptidase S24/S26A/S26B/S26C family protein] -0.241 0.019
94 247753_at AT5G59070 [UDP-Glycosyltransferase superfamily protein] -0.220 0.014
95 255128_at AT4G08310 unknown -0.217 -0.024
96 267044_at AT2G34357 [ARM repeat superfamily protein] -0.215 -0.017
97 266234_at AT2G02350 AtPP2-B9, Phloem protein 2-B9, SKIP3, SKP1 interacting partner 3 -0.211 -0.086
98 246435_at AT5G17460 unknown -0.209 -0.004
99 245110_at AT2G41550 [Rho termination factor] -0.208 -0.017
100 259903_at AT1G74160 TRM4, TON1 Recruiting Motif 4 -0.208 -0.011
101 264452_at AT1G10270 GRP23, glutamine-rich protein 23 -0.207 -0.014
102 246409_at AT1G57700 [Protein kinase superfamily protein] -0.207 0.043
103 253319_at AT4G33990 EMB2758, embryo defective 2758 -0.203 -0.014
104 254491_at AT4G20300 unknown -0.202 0.072
105 264047_at AT2G22410 SLO1, SLOW GROWTH 1 -0.201 -0.124
106 248694_at AT5G48340 unknown -0.199 -0.043
107 245227_s_at AT1G08410 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.197 -0.045
108 260556_at AT2G43620 [Chitinase family protein] -0.196 0.090
109 256480_at AT1G33410 ATNUP160, ARABIDOPSIS NUCLEOPORIN 160, NUP160, NUCLEOPORIN 160, SAR1, SUPPRESSOR OF AUXIN RESISTANCE1 -0.196 -0.018
110 251564_at AT3G58160 ATMYOS3, ATXIJ, MYOSIN XI J, MYA3, MYOSIN A3, XI-16, MYOSIN XI-16, XIJ -0.193 -0.009
111 250915_at AT5G03790 ATHB51, HB51, homeobox 51, LMI1, LATE MERISTEM IDENTITY1 -0.191 -0.078
112 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 -0.190 0.013
113 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 -0.187 -0.048
114 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] -0.186 0.073
115 266595_at AT2G46180 GC4, golgin candidate 4 -0.184 -0.001
116 267148_at AT2G23470 RUS4, ROOT UV-B SENSITIVE 4 -0.178 -0.041
117 253566_at AT4G31210 [DNA topoisomerase, type IA, core] -0.171 0.031
118 257759_at AT3G23070 ATCFM3A, CFM3A, CRM family member 3A -0.170 -0.012
119 254238_at AT4G23540 [ARM repeat superfamily protein] -0.170 0.025
120 259376_at AT3G16320 Tetratricopeptide repeat (TPR)-like superfamily protein -0.170 -0.038
121 250715_at AT5G06160 ATO, ATROPOS -0.169 -0.040
122 258254_at AT3G26782 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.166 -0.029
123 256904_at AT3G23980 BLI, BLISTER, KOS1, KOLD SENSITIV 1 -0.156 -0.021
124 262663_at AT1G13940 unknown -0.154 0.021
125 256192_at AT1G30110 ATNUDX25, nudix hydrolase homolog 25, NUDX25, nudix hydrolase homolog 25 -0.150 -0.043