4.0:Information of module
root longitudinal zone-3 low sulfur
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 1.590e-07
GO:0019538 protein metabolic process BP 3.181e-05
GO:0065004 protein-DNA complex assembly BP 4.850e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0033554 cellular response to stress BP 2.551e-11
GO:0006950 response to stress BP 4.485e-11
GO:1901700 response to oxygen-containing compound BP 1.182e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root longitudinal zone-3 low sulfur		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 1.403 0.098
2 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 1.244 -0.131
3 250108_at AT5G15150 ATHB-3, homeobox 3, ATHB3, HAT7, HOMEOBOX FROM ARABIDOPSIS THALIANA 7, HB-3, homeobox 3 1.075 -0.056
4 262864_at AT1G64920 [UDP-Glycosyltransferase superfamily protein] 1.066 0.026
5 247476_at AT5G62330 unknown 1.042 -0.117
6 262230_at AT1G68560 ATXYL1, ALPHA-XYLOSIDASE 1, AXY3, altered xyloglucan 3, TRG1, thermoinhibition resistant germination 1, XYL1, alpha-xylosidase 1 0.953 -0.040
7 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H 0.911 -0.100
8 248646_at AT5G49100 unknown 0.910 -0.283
9 253662_at AT4G30080 ARF16, auxin response factor 16 0.909 -0.131
10 253947_at AT4G26760 MAP65-2, microtubule-associated protein 65-2 0.896 -0.091
11 264565_at AT1G05280 unknown 0.868 0.116
12 246229_at AT4G37160 sks15, SKU5 similar 15 0.864 0.064
13 245571_at AT4G14695 [Uncharacterised protein family (UPF0041)] 0.841 -0.083
14 247922_at AT5G57500 [Galactosyltransferase family protein] 0.817 0.002
15 264767_at AT1G61380 SD1-29, S-domain-1 29 0.806 -0.034
16 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] 0.784 -0.120
17 262201_at AT2G01120 ATORC4, ORIGIN RECOGNITION COMPLEX SUBUNIT 4, ORC4, origin recognition complex subunit 4 0.773 0.102
18 251575_at AT3G58120 ATBZIP61, BZIP61 0.770 -0.106
19 263742_at AT2G20625 unknown 0.759 -0.127
20 265840_at AT2G14530 TBL13, TRICHOME BIREFRINGENCE-LIKE 13 0.747 0.034
21 262236_at AT1G48330 unknown 0.741 -0.202
22 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 0.736 0.112
23 260067_at AT1G73780 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.732 0.215
24 260242_at AT1G63650 AtEGL3, ATMYC-2, EGL1, EGL3, ENHANCER OF GLABRA 3 0.697 -0.028
25 245784_at AT1G32190 [alpha/beta-Hydrolases superfamily protein] 0.684 -0.012
26 258951_at AT3G01380 [transferases] 0.681 -0.017
27 249592_at AT5G37890 [Protein with RING/U-box and TRAF-like domains] 0.675 -0.019
28 258027_at AT3G19515 unknown 0.667 -0.037
29 253211_at AT4G34880 [Amidase family protein] 0.666 0.024
30 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 0.650 -0.024
31 254876_at AT4G11610 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.646 -0.226
32 265663_at AT2G24290 unknown 0.643 -0.119
33 248296_at AT5G53090 [NAD(P)-binding Rossmann-fold superfamily protein] 0.623 -0.081
34 263782_at AT2G46380 unknown 0.623 0.114
35 257150_at AT3G27230 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.615 0.137
36 262605_at AT1G15170 [MATE efflux family protein] 0.613 0.176
37 258638_at AT3G07950 [rhomboid protein-related] 0.612 -0.037
38 256070_at AT1G13730 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] 0.608 -0.038
39 252218_at AT3G50150 unknown 0.606 -0.190
40 249060_at AT5G44560 VPS2.2 0.597 0.017
41 257714_at AT3G27360 H3.1, histone 3.1 0.594 -0.081
42 263199_at AT1G05590 ATHEX3, BETA-HEXOSAMINIDASE 3, HEXO2, beta-hexosaminidase 2 0.593 -0.316
43 254983_at AT4G10560 MEE53, maternal effect embryo arrest 53 0.587 -0.430
44 263914_at AT2G36400 AtGRF3, growth-regulating factor 3, GRF3, growth-regulating factor 3 0.587 -0.025
45 250224_at AT5G14150 unknown 0.585 -0.040
46 259730_at AT1G77660 [Histone H3 K4-specific methyltransferase SET7/9 family protein] 0.577 0.004
47 253740_at AT4G28706 [pfkB-like carbohydrate kinase family protein] 0.574 -0.086
48 246830_at AT5G26360 [TCP-1/cpn60 chaperonin family protein] 0.569 0.020
49 248541_at AT5G50180 [Protein kinase superfamily protein] 0.566 0.024
50 261074_at AT1G07290 GONST2, golgi nucleotide sugar transporter 2 0.550 0.137
51 252147_at AT3G51270 [protein serine/threonine kinases] 0.548 -0.024
52 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 0.545 0.014
53 259300_at AT3G05100 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.544 -0.116
54 261275_at AT1G26700 ATMLO14, MILDEW RESISTANCE LOCUS O 14, MLO14, MILDEW RESISTANCE LOCUS O 14 0.537 0.013
55 247606_at AT5G61000 ATRPA70D, RPA70D 0.529 -0.314
56 251771_at AT3G56000 ATCSLA14, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, CSLA14, cellulose synthase like A14 0.528 -0.130
57 248420_at AT5G51560 [Leucine-rich repeat protein kinase family protein] 0.525 -0.011
58 246141_at AT5G19920 [Transducin/WD40 repeat-like superfamily protein] 0.525 -0.028
59 260368_at AT1G69700 ATHVA22C, HVA22 homologue C, HVA22C, HVA22 homologue C 0.522 -0.095
60 258707_at AT3G09480 [Histone superfamily protein] 0.521 -0.142
61 263194_at AT1G36060 [Integrase-type DNA-binding superfamily protein] 0.509 0.049
62 245828_at AT1G57820 ORTH2, ORTHRUS 2, VIM1, VARIANT IN METHYLATION 1 0.507 -0.052
63 254363_at AT4G22010 sks4, SKU5 similar 4 0.500 0.075
64 260991_at AT1G12160 [Flavin-binding monooxygenase family protein] 0.495 -0.025
65 253855_at AT4G28050 TET7, tetraspanin7 0.493 0.266
66 250747_at AT5G05900 [UDP-Glycosyltransferase superfamily protein] 0.478 -0.069
67 247356_at AT5G63800 BGAL6, beta-galactosidase 6, MUM2, MUCILAGE-MODIFIED 2 0.477 -0.186
68 250746_at AT5G05880 [UDP-Glycosyltransferase superfamily protein] 0.476 0.199
69 265225_at AT2G36720 [Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain] 0.474 0.133
70 246849_at AT5G26850 [Uncharacterized protein] 0.474 -0.039
71 251183_at AT3G62630 unknown 0.472 0.053
72 257848_at AT3G13030 [hAT transposon superfamily protein] 0.468 -0.021
73 257879_at AT3G17160 unknown 0.467 0.069
74 265335_at AT2G18245 [alpha/beta-Hydrolases superfamily protein] 0.467 0.162
75 251550_at AT3G58800 unknown 0.460 -0.532
76 248150_at AT5G54670 ATK3, kinesin 3, KATC, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C 0.457 0.112
77 257720_at AT3G18450 [PLAC8 family protein] -1.222 -0.096
78 258606_at AT3G02840 [ARM repeat superfamily protein] -1.139 -0.045
79 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] -1.126 0.010
80 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor -1.072 -0.027
81 265327_at AT2G18210 unknown -1.071 0.311
82 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -1.067 0.040
83 264071_at AT2G27920 SCPL51, serine carboxypeptidase-like 51 -1.020 -0.011
84 253024_at AT4G38080 [hydroxyproline-rich glycoprotein family protein] -0.983 0.089
85 252209_at AT3G50400 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.950 0.133
86 264347_at AT1G12040 LRX1, leucine-rich repeat/extensin 1 -0.949 -0.065
87 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase -0.948 0.134
88 260076_at AT1G73630 [EF hand calcium-binding protein family] -0.947 -0.020
89 259548_at AT1G35260 MLP165, MLP-like protein 165 -0.939 0.059
90 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 -0.929 -0.023
91 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 -0.916 -0.151
92 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 -0.898 -0.062
93 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.896 -0.146
94 246375_at AT1G51830 [Leucine-rich repeat protein kinase family protein] -0.895 -0.223
95 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.894 0.106
96 248322_at AT5G52760 [Copper transport protein family] -0.890 -0.112
97 247072_at AT5G66490 unknown -0.889 -0.146
98 255264_at AT4G05170 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.886 0.053
99 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C -0.873 -0.025
100 247205_at AT5G64890 PROPEP2, elicitor peptide 2 precursor -0.839 0.045
101 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -0.836 -0.056
102 253859_at AT4G27657 unknown -0.829 -0.150
103 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 -0.827 -0.117
104 265024_at AT1G24600 unknown -0.826 -0.073
105 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor -0.822 -0.123
106 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.805 -0.007
107 247212_at AT5G65040 unknown -0.802 -0.049
108 262533_at AT1G17090 unknown -0.775 0.106
109 262349_at AT2G48130 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.774 -0.082
110 264573_at AT1G05310 [Pectin lyase-like superfamily protein] -0.772 0.066
111 249393_at AT5G40170 AtRLP54, receptor like protein 54, RLP54, receptor like protein 54 -0.767 0.129
112 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.759 0.210
113 259481_at AT1G18970 GLP4, germin-like protein 4 -0.758 -0.131
114 245041_at AT2G26530 AR781 -0.756 -0.226
115 265728_at AT2G31990 [Exostosin family protein] -0.746 0.196
116 258323_at AT3G22750 [Protein kinase superfamily protein] -0.728 -0.027
117 249439_at AT5G40020 [Pathogenesis-related thaumatin superfamily protein] -0.728 -0.028
118 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 -0.727 0.098
119 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.721 0.093
120 267298_at AT2G23760 BLH4, BEL1-like homeodomain 4, SAW2, SAWTOOTH 2 -0.712 -0.084
121 261027_at AT1G01340 ACBK1, ATCNGC10, cyclic nucleotide gated channel 10, CNGC10, cyclic nucleotide gated channel 10 -0.697 -0.024
122 257371_at AT2G47810 NF-YB5, nuclear factor Y, subunit B5 -0.697 -0.028
123 265856_at AT2G42430 ASL18, ASYMMETRIC LEAVES2-LIKE 18, LBD16, lateral organ boundaries-domain 16 -0.691 -0.052
124 247913_at AT5G57510 unknown -0.686 -0.040
125 248715_at AT5G48290 [Heavy metal transport/detoxification superfamily protein ] -0.685 0.077
126 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 -0.684 0.043
127 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 -0.683 -0.136
128 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 -0.681 -0.125
129 253832_at AT4G27654 unknown -0.674 0.171
130 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 -0.662 0.049
131 262665_at AT1G14070 FUT7, fucosyltransferase 7 -0.650 0.205
132 265611_at AT2G25510 unknown -0.643 0.007
133 255814_at AT1G19900 [glyoxal oxidase-related protein] -0.641 0.000
134 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] -0.640 0.063
135 245891_at AT5G09220 AAP2, amino acid permease 2 -0.627 -0.064
136 267128_at AT2G23620 ATMES1, ARABIDOPSIS THALIANA METHYL ESTERASE 1, MES1, methyl esterase 1 -0.625 -0.105
137 258300_at AT3G23340 ckl10, casein kinase I-like 10 -0.624 -0.044
138 257925_at AT3G23170 unknown -0.617 -0.058
139 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.616 0.167
140 254374_at AT4G21780 unknown -0.613 0.035
141 253227_at AT4G35030 [Protein kinase superfamily protein] -0.611 0.029
142 255457_at AT4G02770 PSAD-1, photosystem I subunit D-1 -0.601 -0.068
143 262507_at AT1G11330 [S-locus lectin protein kinase family protein] -0.597 0.016
144 252421_at AT3G47540 [Chitinase family protein] -0.586 0.116
145 253510_at AT4G31730 GDU1, glutamine dumper 1 -0.585 -0.031
146 263566_at AT2G15340 [glycine-rich protein] -0.580 -0.161
147 253049_at AT4G37300 MEE59, maternal effect embryo arrest 59 -0.579 -0.095
148 251031_at AT5G02120 OHP, one helix protein, PDE335, PIGMENT DEFECTIVE 335 -0.579 0.021
149 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.577 0.112
150 266975_at AT2G39380 ATEXO70H2, exocyst subunit exo70 family protein H2, EXO70H2, exocyst subunit exo70 family protein H2 -0.573 -0.103
151 265246_at AT2G43050 ATPMEPCRD -0.570 -0.044