4.0:Information of module
root longitudinal zone-1 pH 4.6
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901575 organic substance catabolic process BP 2.774e-04
GO:0006354 DNA-templated transcription, elongation BP 3.291e-04
GO:0007568 aging BP 3.671e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0022402 cell cycle process BP 4.280e-06
GO:1903047 mitotic cell cycle process BP 8.525e-06
GO:0000281 mitotic cytokinesis BP 1.425e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root longitudinal zone-1 pH 4.6		 Log2 signal ratio
bri1-116
1 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 1.068 -0.032
2 246375_at AT1G51830 [Leucine-rich repeat protein kinase family protein] 0.703 -0.080
3 249304_at AT5G41480 ATDFA, A. THALIANA DHFS-FPGS HOMOLOG A, DFA, DHFS-FPGS HOMOLOG A, EMB9, EMBRYO DEFECTIVE 9, GLA1, GLOBULAR ARREST1 0.682 -0.009
4 265234_at AT2G07721 unknown 0.665 0.159
5 252689_at AT3G44030 [pseudogene] 0.654 0.052
6 264301_at AT1G78780 [pathogenesis-related family protein] 0.625 0.066
7 245165_at AT2G33180 unknown 0.618 0.288
8 262745_at AT1G28600 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.600 0.037
9 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.594 -0.267
10 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.587 -0.190
11 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 0.581 0.197
12 264101_at AT1G79000 ATHAC1, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, ATHPCAT2, ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, HAC1, histone acetyltransferase of the CBP family 1, PCAT2, P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2 0.514 -0.195
13 245495_at AT4G16400 unknown 0.494 0.069
14 256059_at AT1G06990 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.413 -0.010
15 261110_at AT1G75440 UBC16, ubiquitin-conjugating enzyme 16 0.410 -0.253
16 252715_x_at AT3G43900 unknown 0.396 -0.032
17 254288_at AT4G22970 AESP, homolog of separase, ESP, EXTRA SPINDLE POLES, ESP, homolog of separase, RSW4, RADIALLY SWOLLEN 4 0.393 0.049
18 256381_at AT1G66850 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.381 0.045
19 266250_at AT2G27870 [similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1)] 0.373 0.074
20 265242_at AT2G07705 unknown 0.367 0.145
21 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] 0.357 -0.146
22 246015_at AT5G10700 [Peptidyl-tRNA hydrolase II (PTH2) family protein] 0.356 0.127
23 266837_x_at AT2G25990 unknown 0.356 0.068
24 245711_at AT5G04340 C2H2, CZF2, COLD INDUCED ZINC FINGER PROTEIN 2, ZAT6, zinc finger of Arabidopsis thaliana 6 0.355 -0.212
25 250374_at AT5G11530 EMF1, embryonic flower 1 0.349 -0.051
26 265860_at AT2G01810 [RING/FYVE/PHD zinc finger superfamily protein] 0.347 0.048
27 256208_at AT1G50930 unknown 0.341 0.005
28 266690_at AT2G19900 ATNADP-ME1, Arabidopsis thaliana NADP-malic enzyme 1, NADP-ME1, NADP-malic enzyme 1 0.337 0.013
29 265472_at AT2G15580 [RING/U-box superfamily protein] 0.333 0.139
30 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 0.324 -0.059
31 253264_at AT4G33950 ATOST1, OPEN STOMATA 1, OST1, OPEN STOMATA 1, P44, SNRK2-6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, SNRK2.6, SNF1-RELATED PROTEIN KINASE 2.6, SRK2E 0.319 0.092
32 266026_at AT2G05980 [non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)] 0.316 -0.056
33 265176_at AT1G23520 unknown 0.312 -0.027
34 252210_at AT3G50410 OBP1, OBF binding protein 1 0.308 0.188
35 257224_at AT3G27870 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.304 0.210
36 257331_at ATMG01330 ORF107H 0.303 0.018
37 251047_at AT5G02390 unknown 0.302 -0.039
38 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.302 0.114
39 248763_at AT5G47550 [Cystatin/monellin superfamily protein] 0.300 -0.185
40 267081_at AT2G41210 PIP5K5, phosphatidylinositol- 4-phosphate 5-kinase 5 0.295 0.173
41 252522_at AT3G46390 unknown 0.290 0.035
42 244960_at ATCG01020 RPL32, ribosomal protein L32 0.289 0.058
43 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 0.289 0.156
44 266276_at AT2G29330 TRI, tropinone reductase -0.890 -0.094
45 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 -0.869 0.012
46 264896_at AT1G23210 AtGH9B6, glycosyl hydrolase 9B6, GH9B6, glycosyl hydrolase 9B6 -0.830 -0.095
47 264611_at AT1G04680 [Pectin lyase-like superfamily protein] -0.710 -0.179
48 263352_at AT2G22080 unknown -0.669 -0.137
49 257774_at AT3G29250 AtSDR4, SDR4, short-chain dehydrogenase reductase 4 -0.655 -0.224
50 259290_at AT3G11520 CYC2, CYCLIN 2, CYCB1;3, CYCLIN B1;3 -0.627 -0.438
51 245674_at AT1G56680 [Chitinase family protein] -0.625 0.029
52 266655_at AT2G25880 AtAUR2, ataurora2, AUR2, ataurora2 -0.623 -0.154
53 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 -0.618 -0.157
54 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.565 0.075
55 266711_at AT2G46740 AtGulLO5, GulLO5, L -gulono-1,4-lactone ( L -GulL) oxidase 5 -0.557 -0.023
56 251723_at AT3G56230 [BTB/POZ domain-containing protein] -0.517 -0.173
57 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 -0.516 -0.474
58 245245_at AT1G44318 hemb2 -0.515 -0.122
59 245637_at AT1G25230 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.488 -0.162
60 262331_at AT1G64050 unknown -0.471 0.089
61 264802_at AT1G08560 ATSYP111, KN, KNOLLE, SYP111, syntaxin of plants 111 -0.451 -0.187
62 246005_at AT5G08415 LIP1, lipoyl synthase 1 -0.444 0.019
63 257005_at AT3G14190 CMR1, COPPER MODIFIED RESISTANCE 1 -0.414 -0.267
64 264377_at AT2G25060 AtENODL14, ENODL14, early nodulin-like protein 14 -0.397 -0.095
65 266123_at AT2G45180 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.389 -0.062
66 256193_at AT1G30200 [F-box family protein] -0.388 0.023
67 257274_at AT3G14510 [Polyprenyl synthetase family protein] -0.372 0.096
68 249818_at AT5G23860 TUB8, tubulin beta 8 -0.364 -0.251
69 255572_at AT4G01050 TROL, thylakoid rhodanese-like -0.359 0.255
70 265033_at AT1G61520 LHCA3, photosystem I light harvesting complex gene 3 -0.355 0.154
71 250109_at AT5G15230 GASA4, GAST1 protein homolog 4 -0.353 0.036
72 250269_at AT5G12970 [Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein] -0.346 -0.001
73 255428_at AT4G03390 SRF3, STRUBBELIG-receptor family 3 -0.342 -0.150
74 246825_at AT5G26260 [TRAF-like family protein] -0.330 -0.361
75 246378_at AT1G57620 CYB, CYTOPLASMIC BODIES -0.330 -0.001
76 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.326 -0.296
77 251778_at AT3G55660 ATROPGEF6, ROPGEF6, ROP (rho of plants) guanine nucleotide exchange factor 6 -0.326 -0.033
78 258067_at AT3G25980 AtMAD2, MAD2, MITOTIC ARREST-DEFICIENT 2 -0.325 -0.442
79 265349_at AT2G22610 [Di-glucose binding protein with Kinesin motor domain] -0.312 0.070
80 262496_at AT1G21790 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] -0.305 0.007
81 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] -0.293 -0.046
82 254522_at AT4G19980 unknown -0.290 0.208
83 265048_at AT1G52050 [Mannose-binding lectin superfamily protein] -0.280 0.047
84 255478_at AT4G02440 EID1, EMPFINDLICHER IM DUNKELROTEN LICHT 1 -0.278 0.063
85 252048_at AT3G52500 [Eukaryotic aspartyl protease family protein] -0.272 -0.095