4.0:Information of module
root stele pH4.6
In comparison with columella auxin help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0016482 cytoplasmic transport BP 6.256e-13
GO:0072594 establishment of protein localization to... BP 9.317e-13
GO:0033365 protein localization to organelle BP 1.264e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048468 cell development BP 1.963e-09
GO:0048588 developmental cell growth BP 9.645e-09
GO:0010015 root morphogenesis BP 3.011e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root stele pH4.6		 Log2 signal ratio
columella auxin
1 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.756 0.670
2 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.753 0.090
3 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.636 -0.165
4 263515_at AT2G21640 unknown 0.623 0.035
5 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.595 0.037
6 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.566 0.006
7 264471_at AT1G67120 AtMDN1, MDN1, MIDASIN 1 0.562 0.067
8 263402_at AT2G04050 [MATE efflux family protein] 0.541 -0.009
9 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 0.532 -0.124
10 253305_at AT4G33666 unknown 0.477 0.148
11 246282_at AT4G36580 [AAA-type ATPase family protein] 0.463 0.004
12 247052_at AT5G66700 ATHB53, ARABIDOPSIS THALIANA HOMEOBOX 53, HB-8, HOMEOBOX-8, HB53, homeobox 53 0.440 -0.035
13 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.433 0.146
14 246461_at AT5G16930 [AAA-type ATPase family protein] 0.421 0.040
15 257206_at AT3G16530 [Legume lectin family protein] 0.409 0.074
16 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 0.404 -0.245
17 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 0.401 0.107
18 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 0.397 -0.166
19 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 0.396 0.081
20 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.395 -0.048
21 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.393 0.159
22 252946_at AT4G39235 unknown 0.391 0.077
23 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.390 0.088
24 261690_at AT1G50090 AtBCAT7, BCAT7, branched-chain amino acid transaminase 7 0.384 0.132
25 262459_at AT1G50400 [Eukaryotic porin family protein] 0.376 -0.082
26 249008_at AT5G44680 [DNA glycosylase superfamily protein] 0.372 -0.007
27 246850_at AT5G26860 LON1, lon protease 1, LON_ARA_ARA 0.363 -0.008
28 264452_at AT1G10270 GRP23, glutamine-rich protein 23 0.358 0.006
29 245440_at AT4G16680 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.354 0.352
30 245879_at AT5G09420 AtmtOM64, ATTOC64-V, translocon at the outer membrane of chloroplasts 64-V, MTOM64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, OM64, outer membrane 64, TOC64-V, translocon at the outer membrane of chloroplasts 64-V 0.352 0.019
31 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.344 0.078
32 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.333 0.376
33 254797_at AT4G13030 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.328 0.038
34 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 0.323 -0.100
35 255278_at AT4G04940 [transducin family protein / WD-40 repeat family protein] 0.321 0.018
36 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 0.320 -0.017
37 259444_at AT1G02370 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.318 -0.027
38 254419_at AT4G21490 NDB3, NAD(P)H dehydrogenase B3 0.307 -0.129
39 262586_at AT1G15480 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.307 0.034
40 255283_at AT4G04620 ATG8B, autophagy 8b 0.306 0.101
41 256321_at AT1G55020 ATLOX1, ARABIDOPSIS LIPOXYGENASE 1, LOX1, lipoxygenase 1 0.299 -0.261
42 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.297 0.130
43 264832_at AT1G03660 [Ankyrin-repeat containing protein] 0.295 -0.080
44 266712_at AT2G46750 AtGulLO2, GulLO2, L -gulono-1,4-lactone ( L -GulL) oxidase 2 0.294 0.018
45 261240_at AT1G32940 ATSBT3.5, SBT3.5 0.291 0.061
46 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.286 0.040
47 256661_at AT3G11964 RRP5, Ribosomal RNA Processing 5 0.283 0.020
48 258414_at AT3G17380 [TRAF-like family protein] 0.282 0.027
49 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.276 -0.054
50 254079_at AT4G25730 [FtsJ-like methyltransferase family protein] 0.275 -0.003
51 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.273 -0.024
52 262738_at AT1G28530 unknown 0.272 0.052
53 250196_at AT5G14580 [polyribonucleotide nucleotidyltransferase, putative] 0.271 -0.042
54 253566_at AT4G31210 [DNA topoisomerase, type IA, core] 0.271 0.107
55 258505_at AT3G06530 [ARM repeat superfamily protein] 0.263 0.053
56 252355_at AT3G48250 BIR6, Buthionine sulfoximine-insensitive roots 6 0.262 0.071
57 262645_at AT1G62750 ATSCO1, SNOWY COTYLEDON 1, ATSCO1/CPEF-G, SCO1, SNOWY COTYLEDON 1 0.256 0.087
58 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 0.251 0.092
59 256204_at AT1G50840 POLGAMMA2, polymerase gamma 2, PolIA, polymerase I A 0.250 -0.007
60 258741_at AT3G05790 LON4, lon protease 4 0.238 0.038
61 246514_at AT5G15700 [DNA/RNA polymerases superfamily protein] 0.237 -0.014
62 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.236 -0.179
63 261319_at AT1G53090 SPA4, SPA1-related 4 0.234 0.212
64 248495_at AT5G50780 [Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein] 0.234 0.088
65 245426_at AT4G17540 unknown 0.232 -0.022
66 251652_at AT3G57380 [Glycosyltransferase family 61 protein] 0.230 -0.036
67 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.229 -0.082
68 265192_at AT1G05060 unknown 0.228 0.055
69 260156_at AT1G52880 ANAC018, Arabidopsis NAC domain containing protein 18, ATNAM, NAM, NO APICAL MERISTEM, NARS2, NAC-REGULATED SEED MORPHOLOGY 2 0.227 0.119
70 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.226 -0.098
71 260049_at AT1G29940 NRPA2, nuclear RNA polymerase A2 0.225 0.074
72 262626_at AT1G06430 FTSH8, FTSH protease 8 0.224 0.193
73 260522_x_at AT2G41730 unknown 0.222 0.126
74 256881_at AT3G26410 AtTRM11, TRM11, tRNA modification 11 0.222 0.027
75 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 0.221 -0.070
76 266049_at AT2G40780 [Nucleic acid-binding, OB-fold-like protein] 0.221 0.021
77 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 0.219 -0.138
78 256140_at AT1G48650 [DEA(D/H)-box RNA helicase family protein] 0.219 0.040
79 247855_at AT5G58210 [hydroxyproline-rich glycoprotein family protein] 0.218 0.097
80 261242_at AT1G32960 ATSBT3.3, SBT3.3 0.218 0.020
81 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 0.217 -0.068
82 257033_at AT3G19170 ATPREP1, presequence protease 1, ATZNMP, PREP1, presequence protease 1 0.216 0.018
83 249354_at AT5G40480 EMB3012, embryo defective 3012 0.213 0.069
84 250563_at AT5G08050 unknown 0.212 0.010
85 257720_at AT3G18450 [PLAC8 family protein] -1.035 -0.555
86 267137_at AT2G23410 ACPT, cis-prenyltransferase, AtcPT3, CPT, cis-prenyltransferase, cPT3, cis-prenyltransferase 3 -0.930 -0.327
87 257117_at AT3G20160 [Terpenoid synthases superfamily protein] -0.771 -0.315
88 259653_at AT1G55240 unknown -0.742 -0.083
89 267085_at AT2G32620 ATCSLB02, cellulose synthase-like B, ATCSLB2, CELLULOSE SYNTHASE LIKE B2, CSLB02, CELLULOSE SYNTHASE LIKE B2, CSLB02, cellulose synthase-like B -0.741 -0.040
90 252302_at AT3G49190 [O-acyltransferase (WSD1-like) family protein] -0.700 -0.337
91 254949_at AT4G11020 unknown -0.694 -0.322
92 265048_at AT1G52050 [Mannose-binding lectin superfamily protein] -0.657 -0.017
93 263576_at AT2G17080 unknown -0.655 0.363
94 267119_at AT2G32610 ATCSLB01, cellulose synthase-like B1, ATCSLB1, CELLULOSE SYNTHASE LIKE B1, CSLB01, CELLULOSE SYNTHASE LIKE B1, CSLB01, cellulose synthase-like B1 -0.644 -0.003
95 261814_at AT1G08310 [alpha/beta-Hydrolases superfamily protein] -0.623 -0.078
96 258912_at AT3G06460 [GNS1/SUR4 membrane protein family] -0.597 -0.282
97 262863_at AT1G64910 [UDP-Glycosyltransferase superfamily protein] -0.594 -0.064
98 248408_at AT5G51520 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.584 -0.246
99 267439_at AT2G19060 [SGNH hydrolase-type esterase superfamily protein] -0.583 -0.170
100 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.573 -0.068
101 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.573 -0.521
102 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.565 -0.139
103 263282_at AT2G14095 unknown -0.553 -0.197
104 252217_at AT3G50140 unknown -0.549 -0.227
105 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.548 0.045
106 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 -0.546 -0.210
107 267228_at AT2G43890 [Pectin lyase-like superfamily protein] -0.539 -0.808
108 251364_at AT3G61300 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.535 -0.391
109 267222_at AT2G43880 [Pectin lyase-like superfamily protein] -0.505 -0.194
110 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.503 -0.254
111 255757_at AT4G00460 ATROPGEF3, ROPGEF3, ROP (rho of plants) guanine nucleotide exchange factor 3 -0.501 -0.123
112 246585_at AT5G14750 ATMYB66, myb domain protein 66, MYB66, myb domain protein 66, WER, WEREWOLF, WER1, WEREWOLF 1 -0.497 -0.086
113 249868_at AT5G23030 TET12, tetraspanin12 -0.469 -0.203
114 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 -0.465 -0.461
115 264143_at AT1G79330 AMC6, ATMC5, metacaspase 5, ATMCP2b, metacaspase 2b, MC5, metacaspase 5, MCP2b, metacaspase 2b -0.464 -0.216
116 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor -0.452 -0.125
117 252599_at AT3G45390 LecRK-I.2, L-type lectin receptor kinase I.2 -0.422 -0.343
118 247475_at AT5G62310 IRE, INCOMPLETE ROOT HAIR ELONGATION -0.420 -0.389
119 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 -0.416 -0.076
120 260608_at AT2G43870 [Pectin lyase-like superfamily protein] -0.413 -0.228
121 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.405 -0.352
122 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.399 0.574
123 266068_at AT2G18640 GGPS4, geranylgeranyl pyrophosphate synthase 4 -0.394 -0.126
124 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.392 0.032
125 261090_at AT1G07560 [Leucine-rich repeat protein kinase family protein] -0.390 -0.245
126 254912_at AT4G11230 [Riboflavin synthase-like superfamily protein] -0.390 -0.372
127 267164_at AT2G37700 [Fatty acid hydroxylase superfamily] -0.390 -0.202
128 252534_at AT3G46130 ATMYB48, myb domain protein 48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB48, myb domain protein 48 -0.390 -0.029
129 257529_at AT3G03290 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.384 -0.030
130 252936_at AT4G39160 [Homeodomain-like superfamily protein] -0.379 -0.015
131 254911_at AT4G11100 unknown -0.376 -0.074
132 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] -0.374 0.156
133 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] -0.368 -0.252
134 249206_at AT5G42630 ATS, ABERRANT TESTA SHAPE, KAN4, KANADI 4 -0.363 -0.034
135 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.358 -0.384
136 266688_at AT2G19660 [Cysteine/Histidine-rich C1 domain family protein] -0.353 -0.186
137 263915_at AT2G36430 unknown -0.346 -0.060
138 253914_at AT4G27400 [Late embryogenesis abundant (LEA) protein-related] -0.344 -0.034
139 256283_at AT3G12540 unknown -0.343 -0.740
140 255448_at AT4G02810 FAF1, FANTASTIC FOUR 1 -0.337 -0.093
141 254060_at AT4G25350 SHB1, SHORT HYPOCOTYL UNDER BLUE1 -0.334 -0.241
142 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 -0.334 -0.136
143 262789_at AT1G10810 [NAD(P)-linked oxidoreductase superfamily protein] -0.332 -0.115
144 255074_at AT4G09100 [RING/U-box superfamily protein] -0.329 -0.010
145 248407_at AT5G51500 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.328 -0.361
146 261430_at AT1G18830 SEC31A -0.327 -0.107
147 255022_at AT4G10350 ANAC070, NAC domain containing protein 70, BRN2, BEARSKIN 2, NAC070, NAC domain containing protein 70 -0.322 -0.098
148 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] -0.317 0.149
149 265329_at AT2G18450 SDH1-2, succinate dehydrogenase 1-2 -0.316 -0.097
150 267217_at AT2G02610 [Cysteine/Histidine-rich C1 domain family protein] -0.310 -0.338
151 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] -0.308 -0.016
152 252341_at AT3G48940 [Remorin family protein] -0.306 -0.119
153 252327_at AT3G48740 AtSWEET11, SWEET11 -0.306 -0.170
154 246915_at AT5G25880 ATNADP-ME3, Arabidopsis thaliana NADP-malic enzyme 3, NADP-ME3, NADP-malic enzyme 3 -0.304 -0.078
155 247469_at AT5G62165 AGL42, AGAMOUS-like 42, FYF, FOREVER YOUNG FLOWER -0.298 0.026
156 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.292 -0.165
157 261550_at AT1G63450 RHS8, root hair specific 8, XUT1, XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1 -0.291 -0.439
158 262449_at AT1G11160 [Transducin/WD40 repeat-like superfamily protein] -0.285 -0.239
159 263106_at AT2G05160 [CCCH-type zinc fingerfamily protein with RNA-binding domain] -0.283 -0.395
160 255438_at AT4G03070 AOP, AOP1, AOP1.1 -0.281 -0.096
161 262569_at AT1G15180 [MATE efflux family protein] -0.279 -0.034
162 252964_at AT4G38830 CRK26, cysteine-rich RLK (RECEPTOR-like protein kinase) 26 -0.278 -0.437
163 264144_at AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c -0.277 -0.450
164 265155_at AT1G30990 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.274 -0.441
165 260381_at AT1G73860 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.273 -0.456
166 245728_at AT1G73340 [Cytochrome P450 superfamily protein] -0.273 -0.202
167 251650_at AT3G57360 unknown -0.272 -0.128
168 252611_at AT3G45130 LAS1, lanosterol synthase 1 -0.272 -0.132