4.0:Information of module
root epidermis and lateral root cap pH4.6
In comparison with upb1-1 elongation zone help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0072528 pyrimidine-containing compound biosynthe... BP 8.494e-22
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 1.090e-21
GO:0006220 pyrimidine nucleotide metabolic process BP 2.588e-21
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 6.836e-11
GO:0010053 root epidermal cell differentiation BP 1.502e-10
GO:0090627 plant epidermal cell differentiation BP 2.837e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root epidermis and lateral root cap pH4.6		 Log2 signal ratio
upb1-1 elongation zone
1 247902_at AT5G57350 AHA3, H(+)-ATPase 3, ATAHA3, ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE, HA3, H(+)-ATPase 3 1.042 0.206
2 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.629 -0.030
3 259752_at AT1G71040 LPR2, Low Phosphate Root2 0.563 0.186
4 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 0.560 -0.052
5 253332_at AT4G33420 [Peroxidase superfamily protein] 0.551 0.172
6 264471_at AT1G67120 AtMDN1, MDN1, MIDASIN 1 0.536 -0.147
7 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.526 -0.002
8 246850_at AT5G26860 LON1, lon protease 1, LON_ARA_ARA 0.483 0.001
9 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.472 0.037
10 265560_at AT2G05520 ATGRP-3, GLYCINE-RICH PROTEIN 3, ATGRP3, ARABIDOPSIS GLYCINE RICH PROTEIN 3, GRP-3, glycine-rich protein 3, GRP3, GLYCINE-RICH PROTEIN 3 0.457 0.278
11 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.457 0.042
12 246461_at AT5G16930 [AAA-type ATPase family protein] 0.450 -0.057
13 246282_at AT4G36580 [AAA-type ATPase family protein] 0.445 -0.074
14 247799_at AT5G58840 [Subtilase family protein] 0.441 0.018
15 263515_at AT2G21640 unknown 0.439 -0.114
16 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 0.431 -0.047
17 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.421 -0.043
18 251029_at AT5G02050 [Mitochondrial glycoprotein family protein] 0.408 -0.017
19 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.400 0.052
20 246375_at AT1G51830 [Leucine-rich repeat protein kinase family protein] 0.394 0.168
21 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.393 0.008
22 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.383 0.041
23 245879_at AT5G09420 AtmtOM64, ATTOC64-V, translocon at the outer membrane of chloroplasts 64-V, MTOM64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, OM64, outer membrane 64, TOC64-V, translocon at the outer membrane of chloroplasts 64-V 0.382 0.043
24 247612_at AT5G60730 [Anion-transporting ATPase] 0.378 -0.021
25 260824_at AT1G06720 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.374 -0.124
26 254598_at AT4G18990 XTH29, xyloglucan endotransglucosylase/hydrolase 29 0.373 -0.092
27 264702_at AT1G70190 [Ribosomal protein L7/L12, oligomerisation] 0.368 -0.309
28 260585_at AT2G43650 EMB2777, EMBRYO DEFECTIVE 2777 0.366 -0.063
29 248049_at AT5G56090 COX15, cytochrome c oxidase 15 0.365 0.036
30 259465_at AT1G19030 unknown 0.362 0.013
31 264452_at AT1G10270 GRP23, glutamine-rich protein 23 0.358 0.047
32 253777_at AT4G28450 [nucleotide binding] 0.356 -0.150
33 254079_at AT4G25730 [FtsJ-like methyltransferase family protein] 0.351 -0.113
34 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 0.350 0.278
35 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 0.349 -0.056
36 254710_at AT4G18050 ABCB9, ATP-binding cassette B9, PGP9, P-glycoprotein 9 0.342 0.126
37 255283_at AT4G04620 ATG8B, autophagy 8b 0.340 0.016
38 245209_at AT5G12340 unknown 0.334 0.019
39 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.321 -0.060
40 263147_at AT1G53980 [Ubiquitin-like superfamily protein] 0.315 0.085
41 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 0.314 -0.005
42 252355_at AT3G48250 BIR6, Buthionine sulfoximine-insensitive roots 6 0.314 -0.028
43 250087_at AT5G17270 [Protein prenylyltransferase superfamily protein] 0.313 -0.120
44 245164_at AT2G33210 HSP60-2, heat shock protein 60-2 0.312 0.025
45 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.309 0.054
46 249354_at AT5G40480 EMB3012, embryo defective 3012 0.308 -0.081
47 262459_at AT1G50400 [Eukaryotic porin family protein] 0.306 0.030
48 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 0.304 0.031
49 253175_at AT4G35050 MSI3, MULTICOPY SUPPRESSOR OF IRA1 3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3 0.303 -0.012
50 259444_at AT1G02370 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.303 -0.059
51 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.299 0.262
52 253942_at AT4G27010 EMB2788, EMBRYO DEFECTIVE 2788 0.298 -0.072
53 250679_at AT5G06550 JMJ22, Jumonji domain-containing protein 22 0.296 -0.018
54 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.293 -0.208
55 258094_at AT3G14690 CYP72A15, cytochrome P450, family 72, subfamily A, polypeptide 15 0.291 0.382
56 257947_at AT3G21720 ICL, isocitrate lyase 0.290 -0.087
57 252305_at AT3G49240 emb1796, embryo defective 1796 0.287 0.024
58 266712_at AT2G46750 AtGulLO2, GulLO2, L -gulono-1,4-lactone ( L -GulL) oxidase 2 0.285 0.034
59 259422_at AT1G13810 [Restriction endonuclease, type II-like superfamily protein] 0.283 -0.160
60 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a 0.283 0.090
61 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.282 0.002
62 260641_at AT1G53200 unknown 0.282 -0.084
63 263198_at AT1G53990 GLIP3, GDSL-motif lipase 3 0.281 -0.065
64 253566_at AT4G31210 [DNA topoisomerase, type IA, core] 0.280 -0.027
65 261168_at AT1G04945 [HIT-type Zinc finger family protein] 0.278 -0.038
66 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.275 0.016
67 248495_at AT5G50780 [Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein] 0.274 -0.074
68 265151_at AT1G51340 [MATE efflux family protein] 0.273 -0.018
69 248896_at AT5G46350 ATWRKY8, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY8, WRKY DNA-binding protein 8 0.273 -0.066
70 250054_at AT5G17860 CAX7, calcium exchanger 7 0.271 0.057
71 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 0.269 -0.317
72 247855_at AT5G58210 [hydroxyproline-rich glycoprotein family protein] 0.268 0.011
73 249830_at AT5G23300 PYRD, pyrimidine d 0.268 -0.004
74 258179_at AT3G21690 [MATE efflux family protein] 0.267 0.268
75 255793_at AT2G33250 unknown 0.266 -0.075
76 267299_at AT2G30150 [UDP-Glycosyltransferase superfamily protein] 0.264 0.090
77 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.264 0.220
78 264774_at AT1G22890 unknown 0.263 -0.022
79 248984_at AT5G45140 NRPC2, nuclear RNA polymerase C2 0.262 -0.042
80 245363_at AT4G15120 [VQ motif-containing protein] 0.262 0.053
81 252946_at AT4G39235 unknown 0.261 -0.143
82 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.261 -0.031
83 259008_at AT3G09390 ATMT-1, ARABIDOPSIS THALIANA METALLOTHIONEIN-1, ATMT-K, ARABIDOPSIS THALIANA METALLOTHIONEIN-K, MT2A, metallothionein 2A 0.261 -0.129
84 267004_at AT2G34260 WDR55, human WDR55 (WD40 repeat) homolog 0.260 -0.067
85 252246_at AT3G49725 [GTP-binding protein, HflX] 0.259 -0.022
86 250787_at AT5G05560 APC1, anaphase promoting complex 1, EMB2771, EMBRYO DEFECTIVE 2771 0.257 -0.079
87 255317_at AT4G04180 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.254 -0.064
88 263843_at AT2G37020 [Translin family protein] 0.253 -0.101
89 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.253 -0.001
90 254949_at AT4G11020 unknown -0.837 0.499
91 261157_at AT1G34510 [Peroxidase superfamily protein] -0.766 0.272
92 257720_at AT3G18450 [PLAC8 family protein] -0.744 0.606
93 256350_at AT1G54940 GUX4, Glucuronic Acid Substitution of Xylan 4, PGSIP4, plant glycogenin-like starch initiation protein 4 -0.682 0.550
94 264312_at AT1G70450 [Protein kinase superfamily protein] -0.635 0.416
95 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.601 -0.018
96 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 -0.586 0.050
97 254361_at AT4G22212 [Arabidopsis defensin-like protein] -0.573 -0.023
98 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.565 0.480
99 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] -0.562 0.007
100 249868_at AT5G23030 TET12, tetraspanin12 -0.558 0.678
101 265666_at AT2G27440 -0.544 0.316
102 251364_at AT3G61300 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.527 0.387
103 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 -0.523 -0.282
104 262564_at AT1G34330 [pseudogene] -0.518 0.530
105 260723_at AT1G48070 [Thioredoxin superfamily protein] -0.488 -0.009
106 261158_at AT1G34500 [MBOAT (membrane bound O-acyl transferase) family protein] -0.478 -0.008
107 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.475 1.018
108 262904_at AT1G59725 [DNAJ heat shock family protein] -0.473 0.423
109 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.468 0.571
110 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 -0.465 0.250
111 264896_at AT1G23210 AtGH9B6, glycosyl hydrolase 9B6, GH9B6, glycosyl hydrolase 9B6 -0.460 0.137
112 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 -0.449 0.181
113 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.449 0.202
114 259150_at AT3G10320 [Glycosyltransferase family 61 protein] -0.446 0.130
115 251835_at AT3G55180 [alpha/beta-Hydrolases superfamily protein] -0.435 -0.028
116 261708_at AT1G32740 [SBP (S-ribonuclease binding protein) family protein] -0.433 0.584
117 249934_at AT5G22410 RHS18, root hair specific 18 -0.427 0.847
118 255516_at AT4G02270 RHS13, root hair specific 13 -0.400 0.619
119 247610_at AT5G60630 unknown -0.397 -0.099
120 249263_at AT5G41730 [Protein kinase family protein] -0.391 0.373
121 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.388 0.556
122 259650_at AT1G55290 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.387 0.392
123 256283_at AT3G12540 unknown -0.382 0.697
124 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.378 -0.018
125 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 -0.375 0.087
126 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.373 0.128
127 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 -0.368 0.437
128 255756_at AT1G19940 AtGH9B5, glycosyl hydrolase 9B5, GH9B5, glycosyl hydrolase 9B5 -0.363 0.287
129 254097_at AT4G25160 [U-box domain-containing protein kinase family protein] -0.352 0.429
130 251405_at AT3G60330 AHA7, H(+)-ATPase 7, HA7, H(+)-ATPase 7 -0.346 0.482
131 267128_at AT2G23620 ATMES1, ARABIDOPSIS THALIANA METHYL ESTERASE 1, MES1, methyl esterase 1 -0.344 0.186
132 259850_at AT1G72240 unknown -0.341 0.027
133 262898_at AT1G59850 [ARM repeat superfamily protein] -0.336 0.047
134 250632_at AT5G07450 CYCP4;3, cyclin p4;3 -0.334 0.140
135 257418_at AT1G30850 RSH4, root hair specific 4 -0.333 0.596
136 263765_at AT2G21540 ATSFH3, SEC14-LIKE 3, SFH3, SEC14-like 3 -0.331 0.322
137 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] -0.330 0.071
138 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.327 0.191
139 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.322 0.726
140 247097_at AT5G66460 AtMAN7, MAN7, endo-beta-mannase 7 -0.300 -0.135
141 253413_at AT4G33020 ATZIP9, ZIP9 -0.300 0.204
142 246024_at AT5G21130 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.291 0.231
143 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.290 -0.192
144 262789_at AT1G10810 [NAD(P)-linked oxidoreductase superfamily protein] -0.282 -0.037
145 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 -0.278 -0.060
146 247216_at AT5G64860 DPE1, disproportionating enzyme -0.277 -0.177
147 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.271 0.068
148 258421_at AT3G16690 AtSWEET16, SWEET16 -0.270 -0.018
149 262004_at AT1G64480 CBL8, calcineurin B-like protein 8 -0.266 0.012
150 253684_at AT4G29690 [Alkaline-phosphatase-like family protein] -0.263 -0.171
151 250109_at AT5G15230 GASA4, GAST1 protein homolog 4 -0.260 -0.086
152 245604_at AT4G14290 [alpha/beta-Hydrolases superfamily protein] -0.256 0.270
153 266011_at AT2G37440 [DNAse I-like superfamily protein] -0.254 0.174
154 254754_at AT4G13210 [Pectin lyase-like superfamily protein] -0.247 0.136
155 260608_at AT2G43870 [Pectin lyase-like superfamily protein] -0.245 -0.013
156 266596_at AT2G46150 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.243 -0.110
157 260297_at AT1G80280 [alpha/beta-Hydrolases superfamily protein] -0.240 0.067
158 257450_at AT1G10530 unknown -0.237 -0.015
159 253017_at AT4G37970 ATCAD6, CAD6, cinnamyl alcohol dehydrogenase 6 -0.236 0.232
160 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 -0.236 -0.155
161 266191_at AT2G39040 [Peroxidase superfamily protein] -0.233 0.137
162 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 -0.232 -0.112
163 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 -0.230 -0.088
164 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.229 -0.059
165 266548_at AT2G35210 AGD10, MEE28, MATERNAL EFFECT EMBRYO ARREST 28, RPA, root and pollen arfgap -0.228 0.102
166 254781_at AT4G12840 unknown -0.227 -0.029
167 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.225 -0.330
168 261096_at AT1G62940 ACOS5, acyl-CoA synthetase 5 -0.223 -0.030
169 253936_at AT4G26880 [Stigma-specific Stig1 family protein] -0.220 -0.075
170 260907_at AT1G02575 unknown -0.216 0.039
171 260495_at AT2G41810 unknown -0.214 -0.071
172 261246_at AT1G20080 ATSYTB, NTMC2T1.2, NTMC2TYPE1.2, SYT2, synaptotagmin 2, SYTB -0.211 0.072
173 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] -0.208 -0.144
174 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.205 0.008
175 261074_at AT1G07290 GONST2, golgi nucleotide sugar transporter 2 -0.203 -0.005
176 267612_at AT2G26690 AtNPF6.2, NPF6.2, NRT1/ PTR family 6.2 -0.201 0.002
177 260412_at AT1G69830 AMY3, alpha-amylase-like 3, ATAMY3, ALPHA-AMYLASE-LIKE 3 -0.200 0.017