4.0:Information of module
root epidermis and lateral root cap pH4.6
In comparison with red illumination +lincomycin help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0072528 pyrimidine-containing compound biosynthe... BP 8.494e-22
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 1.090e-21
GO:0006220 pyrimidine nucleotide metabolic process BP 2.588e-21
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 6.836e-11
GO:0010053 root epidermal cell differentiation BP 1.502e-10
GO:0090627 plant epidermal cell differentiation BP 2.837e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root epidermis and lateral root cap pH4.6		 Log2 signal ratio
red illumination +lincomycin
1 247902_at AT5G57350 AHA3, H(+)-ATPase 3, ATAHA3, ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE, HA3, H(+)-ATPase 3 1.042 0.147
2 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.629 -0.002
3 259752_at AT1G71040 LPR2, Low Phosphate Root2 0.563 -0.037
4 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 0.560 0.292
5 253332_at AT4G33420 [Peroxidase superfamily protein] 0.551 -0.047
6 264471_at AT1G67120 AtMDN1, MDN1, MIDASIN 1 0.536 0.043
7 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.526 -0.014
8 246850_at AT5G26860 LON1, lon protease 1, LON_ARA_ARA 0.483 0.160
9 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.472 0.123
10 265560_at AT2G05520 ATGRP-3, GLYCINE-RICH PROTEIN 3, ATGRP3, ARABIDOPSIS GLYCINE RICH PROTEIN 3, GRP-3, glycine-rich protein 3, GRP3, GLYCINE-RICH PROTEIN 3 0.457 -0.009
11 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.457 0.024
12 246461_at AT5G16930 [AAA-type ATPase family protein] 0.450 -0.038
13 246282_at AT4G36580 [AAA-type ATPase family protein] 0.445 0.090
14 247799_at AT5G58840 [Subtilase family protein] 0.441 -0.014
15 263515_at AT2G21640 unknown 0.439 0.113
16 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 0.431 -0.120
17 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.421 0.281
18 251029_at AT5G02050 [Mitochondrial glycoprotein family protein] 0.408 0.169
19 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.400 0.028
20 246375_at AT1G51830 [Leucine-rich repeat protein kinase family protein] 0.394 0.085
21 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.393 -0.056
22 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.383 0.004
23 245879_at AT5G09420 AtmtOM64, ATTOC64-V, translocon at the outer membrane of chloroplasts 64-V, MTOM64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, OM64, outer membrane 64, TOC64-V, translocon at the outer membrane of chloroplasts 64-V 0.382 -0.129
24 247612_at AT5G60730 [Anion-transporting ATPase] 0.378 -0.112
25 260824_at AT1G06720 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.374 0.147
26 254598_at AT4G18990 XTH29, xyloglucan endotransglucosylase/hydrolase 29 0.373 -0.041
27 264702_at AT1G70190 [Ribosomal protein L7/L12, oligomerisation] 0.368 0.113
28 260585_at AT2G43650 EMB2777, EMBRYO DEFECTIVE 2777 0.366 0.009
29 248049_at AT5G56090 COX15, cytochrome c oxidase 15 0.365 0.050
30 259465_at AT1G19030 unknown 0.362 -0.141
31 264452_at AT1G10270 GRP23, glutamine-rich protein 23 0.358 0.101
32 253777_at AT4G28450 [nucleotide binding] 0.356 0.282
33 254079_at AT4G25730 [FtsJ-like methyltransferase family protein] 0.351 0.228
34 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 0.350 -0.109
35 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 0.349 0.233
36 254710_at AT4G18050 ABCB9, ATP-binding cassette B9, PGP9, P-glycoprotein 9 0.342 0.090
37 255283_at AT4G04620 ATG8B, autophagy 8b 0.340 0.043
38 245209_at AT5G12340 unknown 0.334 0.086
39 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.321 0.029
40 263147_at AT1G53980 [Ubiquitin-like superfamily protein] 0.315 -0.022
41 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 0.314 0.011
42 252355_at AT3G48250 BIR6, Buthionine sulfoximine-insensitive roots 6 0.314 -0.098
43 250087_at AT5G17270 [Protein prenylyltransferase superfamily protein] 0.313 0.093
44 245164_at AT2G33210 HSP60-2, heat shock protein 60-2 0.312 0.094
45 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.309 -0.037
46 249354_at AT5G40480 EMB3012, embryo defective 3012 0.308 0.080
47 262459_at AT1G50400 [Eukaryotic porin family protein] 0.306 0.030
48 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 0.304 -0.028
49 253175_at AT4G35050 MSI3, MULTICOPY SUPPRESSOR OF IRA1 3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3 0.303 0.147
50 259444_at AT1G02370 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.303 0.090
51 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.299 -0.056
52 253942_at AT4G27010 EMB2788, EMBRYO DEFECTIVE 2788 0.298 0.024
53 250679_at AT5G06550 JMJ22, Jumonji domain-containing protein 22 0.296 0.105
54 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.293 0.272
55 258094_at AT3G14690 CYP72A15, cytochrome P450, family 72, subfamily A, polypeptide 15 0.291 -0.009
56 257947_at AT3G21720 ICL, isocitrate lyase 0.290 0.018
57 252305_at AT3G49240 emb1796, embryo defective 1796 0.287 0.158
58 266712_at AT2G46750 AtGulLO2, GulLO2, L -gulono-1,4-lactone ( L -GulL) oxidase 2 0.285 0.033
59 259422_at AT1G13810 [Restriction endonuclease, type II-like superfamily protein] 0.283 0.227
60 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a 0.283 -0.055
61 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.282 0.131
62 260641_at AT1G53200 unknown 0.282 0.186
63 263198_at AT1G53990 GLIP3, GDSL-motif lipase 3 0.281 0.029
64 253566_at AT4G31210 [DNA topoisomerase, type IA, core] 0.280 0.450
65 261168_at AT1G04945 [HIT-type Zinc finger family protein] 0.278 0.180
66 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.275 0.042
67 248495_at AT5G50780 [Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein] 0.274 0.087
68 265151_at AT1G51340 [MATE efflux family protein] 0.273 -0.195
69 248896_at AT5G46350 ATWRKY8, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY8, WRKY DNA-binding protein 8 0.273 -0.013
70 250054_at AT5G17860 CAX7, calcium exchanger 7 0.271 -0.067
71 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 0.269 -0.032
72 247855_at AT5G58210 [hydroxyproline-rich glycoprotein family protein] 0.268 0.070
73 249830_at AT5G23300 PYRD, pyrimidine d 0.268 0.060
74 258179_at AT3G21690 [MATE efflux family protein] 0.267 -0.002
75 255793_at AT2G33250 unknown 0.266 0.119
76 267299_at AT2G30150 [UDP-Glycosyltransferase superfamily protein] 0.264 0.086
77 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.264 -0.030
78 264774_at AT1G22890 unknown 0.263 0.064
79 248984_at AT5G45140 NRPC2, nuclear RNA polymerase C2 0.262 0.018
80 245363_at AT4G15120 [VQ motif-containing protein] 0.262 -0.073
81 252946_at AT4G39235 unknown 0.261 0.030
82 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.261 0.098
83 259008_at AT3G09390 ATMT-1, ARABIDOPSIS THALIANA METALLOTHIONEIN-1, ATMT-K, ARABIDOPSIS THALIANA METALLOTHIONEIN-K, MT2A, metallothionein 2A 0.261 -0.020
84 267004_at AT2G34260 WDR55, human WDR55 (WD40 repeat) homolog 0.260 0.171
85 252246_at AT3G49725 [GTP-binding protein, HflX] 0.259 -0.009
86 250787_at AT5G05560 APC1, anaphase promoting complex 1, EMB2771, EMBRYO DEFECTIVE 2771 0.257 0.224
87 255317_at AT4G04180 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.254 0.027
88 263843_at AT2G37020 [Translin family protein] 0.253 0.103
89 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.253 0.003
90 254949_at AT4G11020 unknown -0.837 0.057
91 261157_at AT1G34510 [Peroxidase superfamily protein] -0.766 0.064
92 257720_at AT3G18450 [PLAC8 family protein] -0.744 -0.052
93 256350_at AT1G54940 GUX4, Glucuronic Acid Substitution of Xylan 4, PGSIP4, plant glycogenin-like starch initiation protein 4 -0.682 -0.036
94 264312_at AT1G70450 [Protein kinase superfamily protein] -0.635 0.124
95 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.601 -0.192
96 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 -0.586 -0.131
97 254361_at AT4G22212 [Arabidopsis defensin-like protein] -0.573 0.005
98 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.565 -0.012
99 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] -0.562 0.456
100 249868_at AT5G23030 TET12, tetraspanin12 -0.558 -0.065
101 265666_at AT2G27440 -0.544 -0.065
102 251364_at AT3G61300 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.527 0.075
103 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 -0.523 -0.132
104 262564_at AT1G34330 [pseudogene] -0.518 0.006
105 260723_at AT1G48070 [Thioredoxin superfamily protein] -0.488 -0.151
106 261158_at AT1G34500 [MBOAT (membrane bound O-acyl transferase) family protein] -0.478 -0.076
107 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.475 -0.089
108 262904_at AT1G59725 [DNAJ heat shock family protein] -0.473 -0.053
109 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.468 0.010
110 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 -0.465 0.023
111 264896_at AT1G23210 AtGH9B6, glycosyl hydrolase 9B6, GH9B6, glycosyl hydrolase 9B6 -0.460 -0.031
112 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 -0.449 -0.081
113 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.449 -0.018
114 259150_at AT3G10320 [Glycosyltransferase family 61 protein] -0.446 0.122
115 251835_at AT3G55180 [alpha/beta-Hydrolases superfamily protein] -0.435 -0.101
116 261708_at AT1G32740 [SBP (S-ribonuclease binding protein) family protein] -0.433 0.045
117 249934_at AT5G22410 RHS18, root hair specific 18 -0.427 -0.081
118 255516_at AT4G02270 RHS13, root hair specific 13 -0.400 -0.028
119 247610_at AT5G60630 unknown -0.397 -0.028
120 249263_at AT5G41730 [Protein kinase family protein] -0.391 0.036
121 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.388 -0.088
122 259650_at AT1G55290 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.387 -0.092
123 256283_at AT3G12540 unknown -0.382 -0.021
124 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.378 -0.086
125 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 -0.375 -0.097
126 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.373 -0.120
127 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 -0.368 -0.043
128 255756_at AT1G19940 AtGH9B5, glycosyl hydrolase 9B5, GH9B5, glycosyl hydrolase 9B5 -0.363 -0.097
129 254097_at AT4G25160 [U-box domain-containing protein kinase family protein] -0.352 -0.055
130 251405_at AT3G60330 AHA7, H(+)-ATPase 7, HA7, H(+)-ATPase 7 -0.346 0.004
131 267128_at AT2G23620 ATMES1, ARABIDOPSIS THALIANA METHYL ESTERASE 1, MES1, methyl esterase 1 -0.344 -0.014
132 259850_at AT1G72240 unknown -0.341 -0.036
133 262898_at AT1G59850 [ARM repeat superfamily protein] -0.336 -0.128
134 250632_at AT5G07450 CYCP4;3, cyclin p4;3 -0.334 -0.223
135 257418_at AT1G30850 RSH4, root hair specific 4 -0.333 -0.039
136 263765_at AT2G21540 ATSFH3, SEC14-LIKE 3, SFH3, SEC14-like 3 -0.331 0.102
137 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] -0.330 -0.050
138 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.327 -0.114
139 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.322 -0.044
140 247097_at AT5G66460 AtMAN7, MAN7, endo-beta-mannase 7 -0.300 -0.073
141 253413_at AT4G33020 ATZIP9, ZIP9 -0.300 -0.026
142 246024_at AT5G21130 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.291 0.151
143 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.290 -0.185
144 262789_at AT1G10810 [NAD(P)-linked oxidoreductase superfamily protein] -0.282 -0.080
145 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 -0.278 -0.063
146 247216_at AT5G64860 DPE1, disproportionating enzyme -0.277 0.045
147 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.271 -0.088
148 258421_at AT3G16690 AtSWEET16, SWEET16 -0.270 0.035
149 262004_at AT1G64480 CBL8, calcineurin B-like protein 8 -0.266 -0.084
150 253684_at AT4G29690 [Alkaline-phosphatase-like family protein] -0.263 0.024
151 250109_at AT5G15230 GASA4, GAST1 protein homolog 4 -0.260 0.002
152 245604_at AT4G14290 [alpha/beta-Hydrolases superfamily protein] -0.256 -0.099
153 266011_at AT2G37440 [DNAse I-like superfamily protein] -0.254 -0.056
154 254754_at AT4G13210 [Pectin lyase-like superfamily protein] -0.247 -0.015
155 260608_at AT2G43870 [Pectin lyase-like superfamily protein] -0.245 0.004
156 266596_at AT2G46150 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.243 0.012
157 260297_at AT1G80280 [alpha/beta-Hydrolases superfamily protein] -0.240 -0.084
158 257450_at AT1G10530 unknown -0.237 -0.017
159 253017_at AT4G37970 ATCAD6, CAD6, cinnamyl alcohol dehydrogenase 6 -0.236 -0.149
160 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 -0.236 -0.012
161 266191_at AT2G39040 [Peroxidase superfamily protein] -0.233 -0.154
162 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 -0.232 0.111
163 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 -0.230 -0.043
164 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.229 0.007
165 266548_at AT2G35210 AGD10, MEE28, MATERNAL EFFECT EMBRYO ARREST 28, RPA, root and pollen arfgap -0.228 -0.045
166 254781_at AT4G12840 unknown -0.227 0.004
167 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.225 0.108
168 261096_at AT1G62940 ACOS5, acyl-CoA synthetase 5 -0.223 -0.040
169 253936_at AT4G26880 [Stigma-specific Stig1 family protein] -0.220 0.005
170 260907_at AT1G02575 unknown -0.216 0.142
171 260495_at AT2G41810 unknown -0.214 -0.184
172 261246_at AT1G20080 ATSYTB, NTMC2T1.2, NTMC2TYPE1.2, SYT2, synaptotagmin 2, SYTB -0.211 0.061
173 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] -0.208 -0.024
174 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.205 -0.140
175 261074_at AT1G07290 GONST2, golgi nucleotide sugar transporter 2 -0.203 -0.069
176 267612_at AT2G26690 AtNPF6.2, NPF6.2, NRT1/ PTR family 6.2 -0.201 -0.058
177 260412_at AT1G69830 AMY3, alpha-amylase-like 3, ATAMY3, ALPHA-AMYLASE-LIKE 3 -0.200 -0.014