4.0:Information of module
Whole root - low pH 6H
In comparison with hira-root help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0033554 cellular response to stress BP 1.260e-05
GO:0050896 response to stimulus BP 1.181e-04
GO:0098771 inorganic ion homeostasis BP 2.253e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043933 macromolecular complex subunit organizat... BP 2.451e-08
GO:0006325 chromatin organization BP 6.033e-08
GO:0043414 macromolecule methylation BP 1.261e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - low pH 6H		 Log2 signal ratio
hira-root
1 263402_at AT2G04050 [MATE efflux family protein] 1.243 -0.162
2 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.691 -0.697
3 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.676 -0.195
4 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.537 -0.259
5 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 0.526 -0.461
6 263061_at AT2G18190 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.524 -0.431
7 262624_at AT1G06450 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.462 -0.197
8 247772_at AT5G58610 [PHD finger transcription factor, putative] 0.455 -0.160
9 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.450 -0.647
10 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 0.445 -0.062
11 256852_at AT3G18610 ATNUC-L2, nucleolin like 2, NUC-L2, nucleolin like 2, PARLL1, PARALLEL1-LIKE 1 0.370 -0.301
12 250023_at AT5G18220 [O-Glycosyl hydrolases family 17 protein] 0.369 0.021
13 248870_at AT5G46710 [PLATZ transcription factor family protein] 0.354 -0.169
14 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 0.335 -0.150
15 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.329 -0.572
16 260539_at AT2G43480 [Peroxidase superfamily protein] 0.319 0.379
17 254200_at AT4G24110 unknown 0.310 -0.627
18 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 0.304 -0.464
19 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.296 -0.315
20 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 0.294 -0.302
21 262353_at AT1G64210 [Leucine-rich repeat protein kinase family protein] 0.291 0.373
22 262882_at AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 0.265 -0.008
23 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.259 -0.129
24 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 0.252 -0.475
25 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 0.246 0.125
26 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.243 -0.398
27 261618_at AT1G33110 [MATE efflux family protein] 0.239 -0.199
28 253824_at AT4G27940 ATMTM1, ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, MTM1, manganese tracking factor for mitochondrial SOD2 0.234 -0.021
29 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.228 0.243
30 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 0.226 -0.406
31 253150_at AT4G35660 unknown 0.225 -0.119
32 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.225 -0.159
33 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.225 -0.110
34 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 0.221 -0.222
35 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.210 -0.412
36 267279_at AT2G19460 unknown 0.208 -0.016
37 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.204 -0.222
38 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 0.202 -0.032
39 245909_at AT5G09380 [RNA polymerase III RPC4] 0.198 -0.073
40 263937_at AT2G35910 [RING/U-box superfamily protein] 0.194 0.093
41 255111_at AT4G08780 [Peroxidase superfamily protein] 0.193 -0.345
42 266963_at AT2G39450 ATMTP11, MTP11 0.180 -0.102
43 263436_at AT2G28690 unknown 0.172 -0.101
44 262118_at AT1G02850 BGLU11, beta glucosidase 11 0.161 -0.322
45 247670_at AT5G60190 [Cysteine proteinases superfamily protein] 0.155 -0.021
46 259980_at AT1G76520 [Auxin efflux carrier family protein] 0.150 -0.151
47 255719_at AT1G32080 AtLrgB, LrgB 0.149 -0.130
48 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.954 1.026
49 260495_at AT2G41810 unknown -0.862 0.340
50 267228_at AT2G43890 [Pectin lyase-like superfamily protein] -0.817 0.079
51 263610_at AT2G16230 [O-Glycosyl hydrolases family 17 protein] -0.557 0.365
52 246530_at AT5G15725 GLV9, GOLVEN 9 -0.508 0.379
53 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.448 0.456
54 249971_at AT5G19110 [Eukaryotic aspartyl protease family protein] -0.381 0.296
55 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 -0.379 1.165
56 259222_at AT3G03680 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.331 0.079
57 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.315 0.335
58 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.314 0.028
59 260608_at AT2G43870 [Pectin lyase-like superfamily protein] -0.302 -0.089
60 258089_at AT3G14740 [RING/FYVE/PHD zinc finger superfamily protein] -0.300 0.164
61 249788_at AT5G24330 ATXR6, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6, SDG34, SET DOMAIN PROTEIN 34 -0.295 0.005
62 257714_at AT3G27360 H3.1, histone 3.1 -0.289 0.033
63 249836_at AT5G23420 HMGB6, high-mobility group box 6 -0.286 0.518
64 248511_at AT5G50375 CPI1, cyclopropyl isomerase -0.272 0.300
65 259042_at AT3G03450 RGL2, RGA-like 2 -0.272 0.188
66 265097_at AT1G04020 ATBARD1, BARD1, breast cancer associated RING 1, ROW1 -0.262 0.098
67 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 -0.261 0.641
68 264114_at AT2G31270 ATCDT1A, ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, CDT1, ARABIDOPSIS HOMOLOG OF YEAST CDT1, CDT1A, homolog of yeast CDT1 A -0.261 0.080
69 248408_at AT5G51520 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.258 0.431
70 264682_at AT1G65570 [Pectin lyase-like superfamily protein] -0.251 0.908
71 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 -0.249 -0.034
72 252692_at AT3G43960 [Cysteine proteinases superfamily protein] -0.249 0.219
73 254284_at AT4G22910 CCS52A1, cell cycle switch protein 52 A1, FZR2, FIZZY-related 2 -0.248 0.340
74 250469_at AT5G10130 [Pollen Ole e 1 allergen and extensin family protein] -0.247 0.622
75 247741_at AT5G58960 GIL1, GRAVITROPIC IN THE LIGHT -0.244 0.155
76 267287_at AT2G23630 sks16, SKU5 similar 16 -0.243 0.469
77 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.233 0.274
78 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 -0.226 -0.112
79 252266_at AT3G49630 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.224 0.063
80 251840_at AT3G54960 ATPDI1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, ATPDIL1-3, PDI-like 1-3, PDI1, PROTEIN DISULFIDE ISOMERASE 1, PDIL1-3, PDI-like 1-3 -0.218 0.064
81 245404_at AT4G17610 [tRNA/rRNA methyltransferase (SpoU) family protein] -0.217 0.023
82 251067_at AT5G01910 unknown -0.215 -0.013
83 262758_at AT1G10780 [F-box/RNI-like superfamily protein] -0.213 0.028
84 255727_at AT1G25510 [Eukaryotic aspartyl protease family protein] -0.213 0.031
85 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.213 -0.018
86 249955_at AT5G18840 [Major facilitator superfamily protein] -0.211 -0.118
87 258242_at AT3G27640 [Transducin/WD40 repeat-like superfamily protein] -0.207 -0.006
88 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 -0.206 0.243
89 259151_at AT3G10310 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.206 0.042
90 248413_at AT5G51600 ATMAP65-3, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, MAP65-3, MICROTUBULE-ASSOCIATED PROTEIN 65-3, PLE, PLEIADE -0.194 0.159
91 251046_at AT5G02370 [ATP binding microtubule motor family protein] -0.189 0.081
92 247326_at AT5G64110 [Peroxidase superfamily protein] -0.189 -0.011
93 252361_at AT3G48490 unknown -0.188 0.325