4.0:Information of module
Whole root - low pH 48H
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1902170 cellular response to reactive nitrogen s... BP 3.790e-03
GO:0048509 regulation of meristem development BP 6.553e-03
GO:0071281 cellular response to iron ion BP 7.478e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0090558 plant epidermis development BP 8.565e-05
GO:0044087 regulation of cellular component biogene... BP 3.595e-04
GO:0090626 plant epidermis morphogenesis BP 7.992e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - low pH 48H		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein 0.284 0.160
2 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] 0.168 -0.100
3 263003_at AT1G54450 [Calcium-binding EF-hand family protein] 0.134 -0.058
4 262787_at AT1G10730 AP1M1, adaptor protein-1 mu-adaptin 1 0.119 -0.055
5 245426_at AT4G17540 unknown 0.110 -0.024
6 262091_at AT1G56160 ATMYB72, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, MYB72, myb domain protein 72 0.096 -0.020
7 250914_at AT5G03780 TRFL10, TRF-like 10 0.093 -0.049
8 246605_at AT5G35340 [pseudogene] 0.086 0.126
9 259368_at AT1G69100 [Eukaryotic aspartyl protease family protein] 0.086 0.080
10 264749_at AT1G22830 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.084 -0.016
11 265708_at AT2G03380 [Pentatricopeptide repeat (PPR) superfamily protein] 0.084 -0.156
12 251058_at AT5G01790 unknown -0.184 0.027
13 257775_at AT3G29260 [NAD(P)-binding Rossmann-fold superfamily protein] -0.179 -0.126
14 267190_at AT2G44170 ATNMT2, ARABIDOPSIS N-MYRISTOYLTRANSFERASE 2, NMT2, N-myristoyltransferase 2 -0.176 -0.003
15 252211_at AT3G50220 IRX15, IRREGULAR XYLEM 15 -0.146 -0.054
16 264323_at AT1G04180 YUC9, YUCCA 9 -0.145 0.104
17 262987_at AT1G23240 [Caleosin-related family protein] -0.141 0.148
18 258278_at AT3G26860 [Plant self-incompatibility protein S1 family] -0.135 0.086
19 250685_at AT5G06670 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.132 0.027
20 259189_at AT3G01700 AGP11, arabinogalactan protein 11, ATAGP11, ARABINOGALACTAN PROTEIN 11 -0.124 -0.216
21 246834_at AT5G26630 [MADS-box transcription factor family protein] -0.122 0.273