4.0:Information of module
Whole root - low pH 1H
In comparison with Rsch CA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010243 response to organonitrogen compound BP 1.963e-06
GO:0010200 response to chitin BP 1.542e-05
GO:0009612 response to mechanical stimulus BP 3.759e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006355 regulation of transcription, DNA-templat... BP 1.654e-03
GO:1903506 regulation of nucleic acid-templated tra... BP 1.654e-03
GO:2001141 regulation of RNA biosynthetic process BP 1.654e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - low pH 1H		 Log2 signal ratio
Rsch CA
1 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 0.447 -0.119
2 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.376 -0.084
3 249046_at AT5G44400 [FAD-binding Berberine family protein] 0.320 -0.128
4 259293_at AT3G11580 [AP2/B3-like transcriptional factor family protein] 0.308 -0.122
5 266908_at AT2G34650 ABR, ABRUPTUS, PID, PINOID 0.244 0.009
6 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 0.201 0.009
7 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.198 -0.272
8 249029_at AT5G44870 LAZ5, LAZARUS 5, TTR1, tolerance to Tobacco ringspot virus 1 0.186 -0.075
9 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.180 -0.107
10 260401_at AT1G69840 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.171 -0.074
11 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.170 0.095
12 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.164 0.132
13 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.157 0.041
14 253284_at AT4G34150 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.157 -0.056
15 249694_at AT5G35790 G6PD1, glucose-6-phosphate dehydrogenase 1 0.155 0.025
16 267228_at AT2G43890 [Pectin lyase-like superfamily protein] -0.702 -0.052
17 263194_at AT1G36060 [Integrase-type DNA-binding superfamily protein] -0.327 0.050
18 247991_at AT5G56320 ATEXP14, ATEXPA14, expansin A14, ATHEXP ALPHA 1.5, EXP14, EXPANSIN 14, EXPA14, expansin A14 -0.317 0.009
19 266873_at AT2G44740 CYCP4;1, cyclin p4;1 -0.307 0.048
20 260608_at AT2G43870 [Pectin lyase-like superfamily protein] -0.294 -0.007
21 257748_at AT3G18710 ATPUB29, ARABIDOPSIS THALIANA PLANT U-BOX 29, PUB29, plant U-box 29 -0.203 0.010
22 253515_at AT4G31320 SAUR37, SMALL AUXIN UPREGULATED RNA 37 -0.199 0.017
23 253510_at AT4G31730 GDU1, glutamine dumper 1 -0.155 -0.052
24 261610_at AT1G49560 [Homeodomain-like superfamily protein] -0.153 0.042
25 259686_at AT1G63100 [GRAS family transcription factor] -0.150 0.051
26 257358_at AT2G40990 [DHHC-type zinc finger family protein] -0.143 0.034
27 267438_at AT2G19050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.142 -0.014
28 261325_at AT1G44780 unknown -0.142 0.114
29 254096_at AT4G25150 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.136 0.085