4.0:Information of module
Whole root - S 3H
In comparison with Dark 1day hml help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019748 secondary metabolic process BP 3.682e-30
GO:0009407 toxin catabolic process BP 6.026e-23
GO:0090487 secondary metabolite catabolic process BP 6.026e-23
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009773 photosynthetic electron transport in pho... BP 6.453e-06
GO:0009767 photosynthetic electron transport chain BP 7.612e-05
GO:0022900 electron transport chain BP 2.160e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - S 3H		 Log2 signal ratio
Dark 1day hml
1 267389_at AT2G44460 BGLU28, beta glucosidase 28 1.448 -0.175
2 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 1.186 -2.582
3 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 1.130 -1.734
4 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 1.096 -4.732
5 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.959 -3.843
6 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] 0.777 -0.175
7 253044_at AT4G37290 unknown 0.730 -3.802
8 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.726 0.689
9 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.646 8.764
10 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.645 1.286
11 260406_at AT1G69920 ATGSTU12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, GSTU12, glutathione S-transferase TAU 12 0.610 -0.175
12 260540_at AT2G43500 NLP8, NIN-like protein 8 0.603 -0.527
13 256762_at AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 0.590 -0.175
14 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.536 -0.133
15 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.514 -0.644
16 247704_at AT5G59510 DVL18, DEVIL 18, RTFL5, ROTUNDIFOLIA like 5 0.507 -1.019
17 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.503 -0.948
18 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.503 -2.442
19 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.490 -1.657
20 251824_at AT3G55090 ABCG16, ATP-binding cassette G16 0.472 -2.018
21 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.464 -1.852
22 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 0.463 -4.814
23 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 0.463 -3.449
24 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.459 -0.175
25 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.456 -3.167
26 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.447 -2.538
27 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.447 -1.421
28 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 0.440 -0.071
29 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.420 -4.517
30 254289_at AT4G22980 unknown 0.416 -0.350
31 245560_at AT4G15480 UGT84A1 0.411 -1.096
32 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 0.404 -0.264
33 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.404 -0.755
34 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.398 -3.500
35 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.379 -3.514
36 248400_at AT5G52020 [Integrase-type DNA-binding superfamily protein] 0.368 -1.460
37 252661_at AT3G44450 unknown 0.368 -5.824
38 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.365 -3.315
39 264745_at AT1G62180 5'adenylylphosphosulfate reductase 2 0.356 -3.067
40 246584_at AT5G14730 unknown 0.352 -1.287
41 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.337 -0.175
42 246858_at AT5G25930 [Protein kinase family protein with leucine-rich repeat domain] 0.331 -2.214
43 259133_at AT3G05400 [Major facilitator superfamily protein] 0.330 -0.997
44 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 0.322 -5.563
45 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.322 0.025
46 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.322 -0.175
47 250770_at AT5G05390 LAC12, laccase 12 0.320 1.038
48 245401_at AT4G17670 unknown 0.319 -3.826
49 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.312 -5.405
50 257262_at AT3G21890 BBX31, B-box domain protein 31 0.308 -5.611
51 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.307 -2.619
52 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.307 -1.735
53 245254_at AT4G14680 APS3 0.306 -1.261
54 248381_at AT5G51830 [pfkB-like carbohydrate kinase family protein] 0.305 -1.973
55 265479_at AT2G15760 unknown 0.304 -2.624
56 266656_at AT2G25900 ATCTH, ATTZF1, A. THALIANA TANDEM ZINC FINGER PROTEIN 1 -0.942 1.439
57 261567_at AT1G33055 unknown -0.765 4.715
58 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.740 5.660
59 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.703 3.588
60 252250_at AT3G49790 [Carbohydrate-binding protein] -0.657 3.116
61 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 -0.635 -0.023
62 251443_at AT3G59940 KFB50, Kelch repeat F-box 50, KMD4, KISS ME DEADLY 4 -0.634 2.628
63 259977_at AT1G76590 [PLATZ transcription factor family protein] -0.630 4.942
64 259316_at AT3G01175 unknown -0.628 1.201
65 263970_at AT2G42850 CYP718, cytochrome P450, family 718 -0.622 1.672
66 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 -0.548 7.152
67 248432_at AT5G51390 unknown -0.537 1.999
68 259017_at AT3G07310 unknown -0.533 0.742
69 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] -0.524 -0.098
70 252036_at AT3G52070 unknown -0.477 1.457
71 252882_at AT4G39675 unknown -0.463 4.510
72 263265_at AT2G38820 unknown -0.460 2.638
73 266140_at AT2G28120 [Major facilitator superfamily protein] -0.440 2.431
74 250664_at AT5G07080 [HXXXD-type acyl-transferase family protein] -0.436 -0.576
75 264433_at AT1G61810 BGLU45, beta-glucosidase 45 -0.435 3.276
76 267035_at AT2G38400 AGT3, alanine:glyoxylate aminotransferase 3 -0.434 6.090
77 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.434 1.665
78 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.430 1.366
79 254573_at AT4G19420 [Pectinacetylesterase family protein] -0.417 2.447
80 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 -0.398 3.622
81 259364_at AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, related to ABI3/VP1 1 -0.392 1.326
82 249493_at AT5G39080 [HXXXD-type acyl-transferase family protein] -0.387 -1.446
83 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.383 4.851
84 247005_at AT5G67520 adenosine-5'-phosphosulfate (APS) kinase 4 -0.381 0.223
85 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.369 -3.396
86 264280_at AT1G61820 BGLU46, beta glucosidase 46 -0.363 1.702
87 248795_at AT5G47390 MYBH, MYB hypocotyl elongation-related -0.359 1.226
88 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 -0.332 2.586
89 249923_at AT5G19120 [Eukaryotic aspartyl protease family protein] -0.331 2.533
90 250938_at AT5G03180 [RING/U-box superfamily protein] -0.317 0.728
91 260968_at AT1G12250 [Pentapeptide repeat-containing protein] -0.315 -0.890
92 257615_at AT3G26510 [Octicosapeptide/Phox/Bem1p family protein] -0.298 3.267
93 264247_at AT1G60160 [Potassium transporter family protein] -0.298 1.360
94 247072_at AT5G66490 unknown -0.296 1.374
95 262355_at AT1G72820 Mitochondrial substrate carrier family protein -0.294 1.373
96 266083_at AT2G37820 [Cysteine/Histidine-rich C1 domain family protein] -0.292 -0.175
97 247585_at AT5G60680 unknown -0.287 0.869
98 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.277 6.488
99 261667_at AT1G18460 [alpha/beta-Hydrolases superfamily protein] -0.260 0.594
100 256225_at AT1G56220 [Dormancy/auxin associated family protein] -0.254 2.670
101 247793_at AT5G58650 PSY1, plant peptide containing sulfated tyrosine 1 -0.254 1.986
102 261814_at AT1G08310 [alpha/beta-Hydrolases superfamily protein] -0.251 1.817
103 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 -0.246 1.422
104 264636_at AT1G65490 unknown -0.245 -4.081
105 255068_at AT4G08920 ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, cryptochrome 1, HY4, ELONGATED HYPOCOTYL 4, OOP2, OUT OF PHASE 2 -0.245 0.663
106 256622_at AT3G28920 AtHB34, homeobox protein 34, HB34, homeobox protein 34, ZHD9, ZINC FINGER HOMEODOMAIN 9 -0.240 0.254
107 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 -0.240 -1.515
108 250017_at AT5G18140 DJC69, DNA J protein A69 -0.236 0.555
109 253812_at AT4G28240 [Wound-responsive family protein] -0.236 1.714