4.0:Information of module
Whole root - S 12H
In comparison with Dark 6h wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009407 toxin catabolic process BP 1.407e-11
GO:0090487 secondary metabolite catabolic process BP 1.407e-11
GO:0009404 toxin metabolic process BP 2.059e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0034284 response to monosaccharide BP 6.154e-08
GO:1901700 response to oxygen-containing compound BP 1.636e-07
GO:0009746 response to hexose BP 8.206e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - S 12H		 Log2 signal ratio
Dark 6h wt
1 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 1.048 -2.583
2 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 0.999 -3.148
3 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 0.946 -0.658
4 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.575 -0.047
5 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] 0.509 -0.047
6 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.500 -0.256
7 265290_at AT2G22590 [UDP-Glycosyltransferase superfamily protein] 0.477 -0.981
8 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase 0.454 2.381
9 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.453 -4.206
10 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.441 -0.524
11 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.417 -2.701
12 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.392 -1.267
13 256762_at AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 0.385 -0.047
14 257262_at AT3G21890 BBX31, B-box domain protein 31 0.380 -4.683
15 245560_at AT4G15480 UGT84A1 0.376 -1.267
16 261475_at AT1G14550 [Peroxidase superfamily protein] 0.367 -0.047
17 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.361 -0.835
18 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 0.349 -0.104
19 253044_at AT4G37290 unknown 0.325 -1.912
20 256454_at AT1G75280 [NmrA-like negative transcriptional regulator family protein] 0.318 -2.265
21 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.312 0.890
22 260264_at AT1G68500 unknown 0.296 1.749
23 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.279 -0.047
24 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.279 0.533
25 249522_at AT5G38700 unknown 0.278 -0.047
26 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.272 -2.343
27 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.272 0.001
28 254289_at AT4G22980 unknown 0.271 -1.760
29 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.266 -2.897
30 267437_at AT2G19200 unknown 0.263 -0.047
31 246584_at AT5G14730 unknown 0.261 -0.452
32 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 0.257 0.276
33 262552_at AT1G31350 KUF1, KAR-UP F-box 1 0.256 0.711
34 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 0.252 -1.128
35 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.251 0.114
36 264745_at AT1G62180 5'adenylylphosphosulfate reductase 2 0.248 -4.658
37 260535_at AT2G43390 unknown 0.247 -0.047
38 249599_at AT5G37990 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.239 -0.047
39 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.234 -1.453
40 245401_at AT4G17670 unknown 0.232 -2.433
41 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.231 -0.047
42 264710_at AT1G09790 COBL6, COBRA-like protein 6 precursor 0.226 -0.047
43 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.224 -2.824
44 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.223 -0.047
45 248621_at AT5G49350 [Glycine-rich protein family] 0.221 -0.047
46 254371_at AT4G21760 BGLU47, beta-glucosidase 47 0.221 -3.853
47 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.219 0.325
48 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.210 -0.532
49 251293_at AT3G61930 unknown 0.208 -0.047
50 264906_at AT2G17270 MPT1, mitochondrial phosphate transporter 1, PHT3;3, phosphate transporter 3;3 0.202 -0.487
51 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.199 2.364
52 267070_at AT2G41000 [Chaperone DnaJ-domain superfamily protein] 0.199 -0.519
53 262517_at AT1G17180 ATGSTU25, glutathione S-transferase TAU 25, GSTU25, glutathione S-transferase TAU 25 0.198 -0.047
54 247634_at AT5G60520 [Late embryogenesis abundant (LEA) protein-related] 0.196 -0.047
55 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.951 8.010
56 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 -0.726 5.325
57 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 -0.719 -0.047
58 259316_at AT3G01175 unknown -0.633 1.273
59 261157_at AT1G34510 [Peroxidase superfamily protein] -0.607 -0.047
60 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 -0.596 2.514
61 267045_at AT2G34180 ATWL2, WPL4-LIKE 2, CIPK13, CBL-interacting protein kinase 13, SnRK3.7, SNF1-RELATED PROTEIN KINASE 3.7, WL2, WPL4-LIKE 2 -0.552 0.283
62 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 -0.544 4.197
63 260774_at AT1G78290 SNRK2-8, SNF1-RELATED PROTEIN KINASE 2-8, SNRK2.8, SNF1-RELATED PROTEIN KINASE 2.8, SRK2C, SNF1-RELATED PROTEIN KINASE 2C -0.542 -2.329
64 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 -0.472 2.869
65 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 -0.464 5.355
66 252882_at AT4G39675 unknown -0.455 4.995
67 250664_at AT5G07080 [HXXXD-type acyl-transferase family protein] -0.437 0.166
68 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.436 4.931
69 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.419 -0.583
70 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.417 -2.529
71 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.394 2.434
72 258527_at AT3G06850 BCE2, DIN3, DARK INDUCIBLE 3, LTA1 -0.393 4.033
73 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 -0.392 0.349
74 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.389 4.517
75 252250_at AT3G49790 [Carbohydrate-binding protein] -0.381 2.433
76 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.379 8.565
77 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.378 -0.762
78 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.378 -0.047
79 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.374 6.641
80 252859_at AT4G39780 [Integrase-type DNA-binding superfamily protein] -0.363 -0.203
81 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] -0.351 0.535
82 261006_at AT1G26410 [FAD-binding Berberine family protein] -0.344 -3.124
83 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -0.332 -0.895
84 254648_at AT4G18550 AtDSEL, Arabidopsis thaliana DAD1-like seeding establishment-related lipase, DSEL, DAD1-like seeding establishment-related lipase -0.332 1.048
85 265387_at AT2G20670 unknown -0.331 2.357
86 264280_at AT1G61820 BGLU46, beta glucosidase 46 -0.314 1.254
87 254573_at AT4G19420 [Pectinacetylesterase family protein] -0.312 1.187
88 251336_at AT3G61190 BAP1, BON association protein 1 -0.311 0.243
89 266276_at AT2G29330 TRI, tropinone reductase -0.304 -0.047
90 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.304 -2.841
91 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 -0.298 1.662
92 259364_at AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, related to ABI3/VP1 1 -0.286 1.663
93 249174_at AT5G42900 COR27, cold regulated gene 27 -0.285 -0.031
94 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.270 -0.047
95 266670_at AT2G29740 UGT71C2, UDP-glucosyl transferase 71C2 -0.262 0.646
96 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -0.260 0.464
97 258225_at AT3G15630 unknown -0.255 4.332
98 252570_at AT3G45300 ATIVD, IVD, isovaleryl-CoA-dehydrogenase, IVDH, ISOVALERYL-COA-DEHYDROGENASE -0.251 5.817
99 267035_at AT2G38400 AGT3, alanine:glyoxylate aminotransferase 3 -0.246 4.349
100 253737_at AT4G28703 [RmlC-like cupins superfamily protein] -0.236 4.679
101 245966_at AT5G19790 RAP2.11, related to AP2 11 -0.230 -0.047
102 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.225 1.397
103 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] -0.223 -0.373
104 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.223 -1.293
105 252834_at AT4G40070 [RING/U-box superfamily protein] -0.209 2.568
106 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 -0.206 0.128
107 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.200 -0.047