4.0:Information of module
WT Shoot Hypoxia
In comparison with cat2-2; harvested 8h continiously maintained in high CO2; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 6.544e-15
GO:0070482 response to oxygen levels BP 9.191e-15
GO:0001666 response to hypoxia BP 2.689e-14
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007166 cell surface receptor signaling pathway BP 1.144e-03
GO:0007167 enzyme linked receptor protein signaling... BP 1.407e-03
GO:0007169 transmembrane receptor protein tyrosine ... BP 1.407e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT Shoot Hypoxia		 Log2 signal ratio
cat2-2; harvested 8h continiously maintained in high CO2;
1 250464_at AT5G10040 unknown 1.529 -0.026
2 247024_at AT5G66985 unknown 1.424 -0.201
3 255807_at AT4G10270 [Wound-responsive family protein] 1.384 -0.391
4 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 1.276 -0.101
5 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.251 0.002
6 259879_at AT1G76650 CML38, calmodulin-like 38 1.175 -0.186
7 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.172 -0.152
8 247431_at AT5G62520 SRO5, similar to RCD one 5 1.143 0.017
9 257925_at AT3G23170 unknown 1.088 -0.008
10 253298_at AT4G33560 [Wound-responsive family protein] 1.041 -0.190
11 252882_at AT4G39675 unknown 0.978 -0.050
12 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.938 -0.094
13 254200_at AT4G24110 unknown 0.841 -0.123
14 250152_at AT5G15120 unknown 0.813 -0.054
15 249384_at AT5G39890 unknown 0.741 -0.029
16 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.731 -0.049
17 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.700 -0.055
18 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.599 -0.038
19 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.588 -0.057
20 260668_at AT1G19530 unknown 0.566 -0.337
21 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.561 0.041
22 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.553 0.008
23 261567_at AT1G33055 unknown 0.545 -0.090
24 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.505 -0.356
25 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.471 -0.057
26 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.470 -0.063
27 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.463 -0.271
28 256366_at AT1G66880 [Protein kinase superfamily protein] 0.452 -0.151
29 248322_at AT5G52760 [Copper transport protein family] 0.445 -0.389
30 249234_at AT5G42200 [RING/U-box superfamily protein] 0.443 0.068
31 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.428 0.075
32 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 0.417 0.045
33 248160_at AT5G54470 BBX29, B-box domain protein 29 0.384 -0.015
34 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 -0.494 0.062
35 264696_at AT1G70230 AXY4, ALTERED XYLOGLUCAN 4, TBL27, TRICHOME BIREFRINGENCE-LIKE 27 -0.433 0.028
36 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.420 0.075
37 252204_at AT3G50340 unknown -0.321 0.073
38 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.303 -0.032
39 253035_at AT4G38240 CGL, COMPLEX GLYCAN LESS, CGL1, COMPLEX GLYCAN LESS 1, GNTI, N-ACETYLGLUCOSAMINYLTRANSFERASE I -0.285 0.045
40 262745_at AT1G28600 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.260 0.021
41 248385_at AT5G51910 [TCP family transcription factor ] -0.230 0.076
42 263355_at AT2G22100 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.217 0.013
43 247147_at AT5G65630 GTE7, global transcription factor group E7 -0.214 0.018
44 247764_at AT5G59190 [subtilase family protein] -0.211 -0.067
45 254867_at AT4G12240 [zinc finger (C2H2 type) family protein] -0.205 0.032
46 257207_at AT3G14900 EMB3120, EMBRYO DEFECTIVE 3120 -0.198 0.026
47 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.195 -0.004
48 247406_at AT5G62920 ARR6, response regulator 6 -0.178 0.016
49 245808_at AT1G58470 ATRBP1, RNA-binding protein 1, RBP1, RNA-binding protein 1 -0.177 -0.030
50 246566_at AT5G14940 [Major facilitator superfamily protein] -0.169 -0.015
51 247789_at AT5G58680 [ARM repeat superfamily protein] -0.163 0.050
52 258589_at AT3G04290 ATLTL1, LTL1, Li-tolerant lipase 1 -0.162 0.036
53 266801_at AT2G22870 EMB2001, embryo defective 2001 -0.157 0.044
54 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.155 0.067
55 251048_at AT5G02410 ALG10, homolog of yeast ALG10 -0.153 0.019
56 252164_at AT3G50620 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.150 0.051
57 250424_at AT5G10550 GTE2, global transcription factor group E2 -0.145 0.022
58 265213_at AT1G05020 [ENTH/ANTH/VHS superfamily protein] -0.143 -0.059
59 262001_at AT1G33790 [jacalin lectin family protein] -0.142 -0.064
60 252992_at AT4G38520 APD6, Arabidopsis Pp2c clade D 6 -0.140 0.032
61 262783_at AT1G10850 [Leucine-rich repeat protein kinase family protein] -0.139 0.046
62 264644_at AT1G08960 ATCAX11, CATION EXCHANGER 11, AtCXX5, Arabidopsis thaliana cation calcium exchanger 5, CAX11, cation exchanger 11, CCX5, cation calcium exchanger 5 -0.138 0.040
63 258323_at AT3G22750 [Protein kinase superfamily protein] -0.135 -0.050
64 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] -0.130 -0.331
65 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] -0.129 0.063
66 251075_at AT5G01890 PXC2, PXY/TDR-correlated 2 -0.125 0.042