4.0:Information of module
phyABCDE Rc50
In comparison with abi3-6 12 DAF Seed help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019344 cysteine biosynthetic process BP 3.666e-05
GO:0006534 cysteine metabolic process BP 4.245e-05
GO:0009070 serine family amino acid biosynthetic pr... BP 5.261e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010431 seed maturation BP 1.778e-04
GO:0010162 seed dormancy process BP 1.891e-04
GO:0022611 dormancy process BP 1.891e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
phyABCDE Rc50		 Log2 signal ratio
abi3-6 12 DAF Seed
1 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.495 -0.275
2 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 0.325 -0.305
3 248218_at AT5G53710 unknown 0.312 0.114
4 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.264 -0.021
5 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 0.238 -0.005
6 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.177 -0.170
7 264661_at AT1G09950 RAS1, RESPONSE TO ABA AND SALT 1 0.164 -0.118
8 261642_at AT1G27680 APL2, ADPGLC-PPase large subunit 0.144 0.132
9 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.144 0.491
10 265898_at AT2G25690 unknown 0.137 -0.276
11 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 0.136 0.383
12 252888_at AT4G39210 APL3 0.128 0.497
13 265418_at AT2G20880 AtERF53, ERF53, ERF domain 53 0.126 -0.087
14 260831_at AT1G06830 [Glutaredoxin family protein] 0.125 -0.138
15 260945_at AT1G05950 unknown 0.123 -0.023
16 254284_at AT4G22910 CCS52A1, cell cycle switch protein 52 A1, FZR2, FIZZY-related 2 0.121 -0.024
17 257954_at AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 0.119 0.159
18 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.117 0.110
19 264767_at AT1G61380 SD1-29, S-domain-1 29 0.117 -0.087
20 253318_at AT4G33970 [Leucine-rich repeat (LRR) family protein] 0.116 -0.122
21 247883_at AT5G57790 unknown -0.230 -0.353
22 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.229 0.036
23 257853_at AT3G12960 SMP1, seed maturation protein 1 -0.219 -0.336
24 267036_at AT2G38465 unknown -0.209 -0.715
25 249465_at AT5G39720 AIG2L, avirulence induced gene 2 like protein -0.200 -0.785
26 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.185 -0.188
27 259217_at AT3G03620 [MATE efflux family protein] -0.179 0.056
28 257457_at AT2G05430 [Ubiquitin-specific protease family C19-related protein] -0.172 -0.031
29 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A -0.172 -1.599
30 257334_at ATMG01370 ORF111D -0.167 0.140
31 251291_at AT3G61900 SAUR33, SMALL AUXIN UPREGULATED RNA 33 -0.158 -0.099
32 254200_at AT4G24110 unknown -0.157 0.048
33 249772_at AT5G24130 unknown -0.154 -0.428
34 250389_at AT5G11320 AtYUC4, YUC4, YUCCA4 -0.153 -0.469
35 245073_at AT2G23210 [UDP-Glycosyltransferase superfamily protein] -0.153 -0.012
36 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 -0.152 -0.087
37 246299_at AT3G51810 AT3, ATEM1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, EM1, LATE EMBRYOGENESIS ABUNDANT 1, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1 -0.151 -1.827
38 248038_at AT5G55980 [serine-rich protein-related] -0.147 -0.135
39 246188_at AT5G21050 [LOCATED IN: chloroplast] -0.145 -0.047