4.0:Information of module
ice1 control
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 2.966e-08
GO:0010200 response to chitin BP 6.222e-08
GO:1901700 response to oxygen-containing compound BP 7.196e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 1.052e-16
GO:0009658 chloroplast organization BP 2.424e-15
GO:0009668 plastid membrane organization BP 4.100e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ice1 control		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 1.010 0.110
2 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 0.992 -0.120
3 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 0.986 -0.003
4 264635_at AT1G65500 unknown 0.977 0.386
5 254231_at AT4G23810 ATWRKY53, WRKY53 0.822 0.714
6 264433_at AT1G61810 BGLU45, beta-glucosidase 45 0.812 -0.226
7 252511_at AT3G46280 [protein kinase-related] 0.806 1.005
8 250365_at AT5G11410 [Protein kinase superfamily protein] 0.802 -0.061
9 264886_at AT1G61120 GES, GERANYLLINALOOL SYNTHASE, TPS04, terpene synthase 04, TPS4, TERPENE SYNTHASE 4 0.792 0.065
10 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.762 0.258
11 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.699 0.689
12 252611_at AT3G45130 LAS1, lanosterol synthase 1 0.684 0.171
13 260438_at AT1G68290 ENDO2, endonuclease 2 0.682 0.050
14 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] 0.674 0.581
15 262680_at AT1G75880 [SGNH hydrolase-type esterase superfamily protein] 0.665 0.444
16 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.655 0.545
17 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.647 0.973
18 264746_at AT1G62300 ATWRKY6, WRKY6 0.568 0.435
19 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.551 -0.013
20 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.534 0.466
21 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.526 0.346
22 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.518 0.601
23 251906_at AT3G53720 ATCHX20, cation/H+ exchanger 20, CHX20, cation/H+ exchanger 20 0.514 0.020
24 266993_at AT2G39210 [Major facilitator superfamily protein] 0.512 0.390
25 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] 0.508 0.216
26 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.507 0.161
27 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 0.499 0.007
28 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.496 0.229
29 252989_at AT4G38420 sks9, SKU5 similar 9 0.491 0.318
30 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.464 0.231
31 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] 0.437 0.099
32 263380_at AT2G40200 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.435 -0.289
33 260170_at AT1G71890 ATSUC5, SUCROSE-PROTON SYMPORTER 5, SUC5 0.435 -0.116
34 259514_at AT1G12480 CDI3, CARBON DIOXIDE INSENSITIVE 3, OZS1, OZONE-SENSITIVE 1, RCD3, RADICAL-INDUCED CELL DEATH 3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1 0.429 -0.110
35 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.421 -0.076
36 247225_at AT5G65090 BST1, BRISTLED 1, DER4, DEFORMED ROOT HAIRS 4, MRH3 0.420 -0.076
37 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 0.415 -0.195
38 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.402 -0.049
39 262103_at AT1G02940 ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, GSTF5, glutathione S-transferase (class phi) 5 0.402 -0.018
40 252316_at AT3G48700 ATCXE13, carboxyesterase 13, CXE13, carboxyesterase 13 0.388 -0.355
41 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.387 -0.079
42 256597_at AT3G28500 [60S acidic ribosomal protein family] 0.385 -0.010
43 253168_at AT4G35070 [SBP (S-ribonuclease binding protein) family protein] 0.375 0.210
44 258338_at AT3G16150 ASPGB1, asparaginase B1 0.364 0.379
45 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.363 -0.369
46 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 0.359 0.383
47 252862_at AT4G39830 [Cupredoxin superfamily protein] 0.341 0.322
48 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 0.340 0.356
49 258370_at AT3G14395 unknown 0.334 -0.000
50 249955_at AT5G18840 [Major facilitator superfamily protein] 0.333 0.086
51 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 0.333 0.007
52 261070_at AT1G07390 AtRLP1, receptor like protein 1, RLP1, receptor like protein 1 0.329 0.483
53 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.916 -0.104
54 247878_at AT5G57760 unknown -0.864 0.231
55 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.796 0.007
56 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.750 -0.901
57 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.741 -0.711
58 266300_at AT2G01420 ATPIN4, ARABIDOPSIS PIN-FORMED 4, PIN4, PIN-FORMED 4 -0.687 -0.138
59 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.685 -0.718
60 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] -0.680 0.170
61 260041_at AT1G68780 [RNI-like superfamily protein] -0.632 -0.803
62 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.578 -0.077
63 263951_at AT2G35960 NHL12, NDR1/HIN1-like 12 -0.506 -1.081
64 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.505 -0.204
65 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.492 0.099
66 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 -0.486 0.088
67 251374_at AT3G60390 HAT3, homeobox-leucine zipper protein 3 -0.486 -0.527
68 254737_at AT4G13840 CER26, ECERIFERUM 26 -0.482 -0.216
69 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.478 0.375
70 249645_at AT5G36910 THI2.2, thionin 2.2 -0.463 -0.850
71 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.454 -0.340
72 248028_at AT5G55620 unknown -0.442 -0.558
73 250045_at AT5G17700 [MATE efflux family protein] -0.440 0.107
74 255028_at AT4G09890 unknown -0.420 0.108
75 264788_at AT2G17880 DJC24, DNA J protein C24 -0.412 -0.129
76 257954_at AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 -0.406 -0.580
77 245696_at AT5G04190 PKS4, phytochrome kinase substrate 4 -0.404 -0.173
78 265726_at AT2G32010 CVL1, CVP2 like 1 -0.393 -0.418
79 245463_at AT4G17030 AT-EXPR, ATEXLB1, expansin-like B1, ATEXPR1, ATHEXP BETA 3.1, EXLB1, expansin-like B1, EXPR -0.391 0.039
80 251720_at AT3G56160 [Sodium Bile acid symporter family] -0.389 -0.431
81 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.386 0.109
82 262508_at AT1G11300 [protein serine/threonine kinases] -0.379 -0.569
83 263106_at AT2G05160 [CCCH-type zinc fingerfamily protein with RNA-binding domain] -0.369 -0.460
84 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.356 0.126
85 256035_at AT1G07140 SIRANBP -0.350 0.021
86 262199_at AT1G53800 unknown -0.345 -0.221
87 252178_at AT3G50750 BEH1, BES1/BZR1 homolog 1 -0.343 -0.430
88 247980_at AT5G56860 GATA21, GATA TRANSCRIPTION FACTOR 21, GNC, GATA, nitrate-inducible, carbon metabolism-involved -0.340 -0.449
89 247716_at AT5G59350 unknown -0.329 -0.298
90 250696_at AT5G06790 unknown -0.327 -0.539
91 262290_at AT1G70985 [hydroxyproline-rich glycoprotein family protein] -0.326 -0.739
92 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 -0.324 0.285
93 263151_at AT1G54120 unknown -0.308 -0.046
94 248273_at AT5G53500 [Transducin/WD40 repeat-like superfamily protein] -0.303 -0.290
95 263452_at AT2G22190 TPPE, trehalose-6-phosphate phosphatase E -0.301 -0.415
96 263384_at AT2G40130 SMXL8, SMAX1-like 8 -0.299 -0.059
97 250265_at AT5G12900 unknown -0.298 -0.433
98 256262_at AT3G12150 unknown -0.292 -0.226
99 267578_at AT2G30695 unknown -0.286 -0.524
100 245368_at AT4G15510 PPD1, PsbP-Domain Protein1 -0.285 -0.668
101 254319_at AT4G22560 unknown -0.277 -0.079
102 252129_at AT3G50890 AtHB28, homeobox protein 28, HB28, homeobox protein 28, ZHD7, ZINC FINGER HOMEODOMAIN 7 -0.266 -0.215
103 259371_at AT1G69080 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.260 -0.277