4.0:Information of module
slr-1 2h NAA
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015706 nitrate transport BP 1.620e-04
GO:0010167 response to nitrate BP 2.342e-04
GO:0042446 hormone biosynthetic process BP 2.913e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0034470 ncRNA processing BP 5.372e-10
GO:0009733 response to auxin BP 1.817e-09
GO:0006364 rRNA processing BP 2.407e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
slr-1 2h NAA		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 0.805 0.147
2 266222_at AT2G28780 unknown 0.777 -0.244
3 249046_at AT5G44400 [FAD-binding Berberine family protein] 0.693 -0.728
4 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 0.559 0.345
5 264940_at AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 0.536 -0.918
6 256788_at AT3G13730 CYP90D1, cytochrome P450, family 90, subfamily D, polypeptide 1 0.536 0.470
7 253017_at AT4G37970 ATCAD6, CAD6, cinnamyl alcohol dehydrogenase 6 0.516 0.276
8 251858_at AT3G54820 PIP2;5, plasma membrane intrinsic protein 2;5, PIP2D, PLASMA MEMBRANE INTRINSIC PROTEIN 2D 0.512 -0.286
9 251317_at AT3G61490 [Pectin lyase-like superfamily protein] 0.496 0.427
10 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] 0.483 -0.367
11 256515_at AT1G66020 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.442 -0.274
12 256626_at AT3G20015 [Eukaryotic aspartyl protease family protein] 0.431 0.318
13 258901_at AT3G05640 [Protein phosphatase 2C family protein] 0.397 -0.131
14 256563_at AT3G29780 RALFL27, ralf-like 27 0.360 -0.177
15 258241_at AT3G27650 LBD25, LOB domain-containing protein 25 0.355 0.475
16 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 0.353 -0.209
17 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.352 0.789
18 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 0.342 -0.016
19 254632_at AT4G18630 unknown 0.327 -1.353
20 254069_at AT4G25434 ATNUDT10, nudix hydrolase homolog 10, NUDT10, nudix hydrolase homolog 10 0.312 -0.749
21 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.305 -0.344
22 259743_at AT1G71140 [MATE efflux family protein] 0.289 -1.008
23 252626_at AT3G44940 unknown 0.281 0.134
24 259133_at AT3G05400 [Major facilitator superfamily protein] 0.281 0.242
25 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.277 -0.880
26 261518_at AT1G71695 [Peroxidase superfamily protein] 0.276 0.837
27 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 0.267 0.506
28 250231_at AT5G13910 LEP, LEAFY PETIOLE 0.266 0.419
29 257288_at AT3G29670 PMAT2, phenolic glucoside malonyltransferase 2 0.263 -1.321
30 267298_at AT2G23760 BLH4, BEL1-like homeodomain 4, SAW2, SAWTOOTH 2 0.258 -0.628
31 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.253 -0.299
32 247827_at AT5G58500 LSH5, LIGHT SENSITIVE HYPOCOTYLS 5 0.244 -0.032
33 248344_at AT5G52280 [Myosin heavy chain-related protein] 0.242 0.453
34 254791_at AT4G12910 scpl20, serine carboxypeptidase-like 20 0.242 1.187
35 258078_at AT3G25870 unknown 0.241 -0.045
36 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 0.234 0.719
37 248028_at AT5G55620 unknown 0.232 -0.069
38 266798_at AT2G22850 AtbZIP6, basic leucine-zipper 6, bZIP6, basic leucine-zipper 6 0.231 -0.933
39 249212_at AT5G42690 unknown 0.230 0.474
40 245089_at AT2G45290 TKL2, transketolase 2 0.223 0.254
41 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.222 -0.408
42 250629_at AT5G07390 ATRBOHA, respiratory burst oxidase homolog A, RBOHA, respiratory burst oxidase homolog A 0.222 -0.391
43 248140_at AT5G54980 [Uncharacterised protein family (UPF0497)] 0.219 1.229
44 261925_at AT1G22540 [Major facilitator superfamily protein] 0.216 0.190
45 264532_at AT1G55740 AtSIP1, seed imbibition 1, RS1, raffinose synthase 1, SIP1, seed imbibition 1 0.215 1.283
46 260840_at AT1G29050 TBL38, TRICHOME BIREFRINGENCE-LIKE 38 0.214 0.161
47 254146_at AT4G24260 ATGH9A3, glycosyl hydrolase 9A3, GH9A3, glycosyl hydrolase 9A3, KOR3 0.213 -0.077
48 249029_at AT5G44870 LAZ5, LAZARUS 5, TTR1, tolerance to Tobacco ringspot virus 1 0.210 0.271
49 262788_at AT1G10690 unknown 0.208 -0.386
50 265983_at AT2G18550 ATHB21, homeobox protein 21, HB-2, homeobox-2, HB21, homeobox protein 21 0.205 -1.449
51 250054_at AT5G17860 CAX7, calcium exchanger 7 0.205 -0.061
52 257874_at AT3G17110 [pseudogene] 0.204 0.143
53 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.202 -0.310
54 245724_at AT1G73390 [Endosomal targeting BRO1-like domain-containing protein] 0.202 0.013
55 260833_at AT1G06800 DALL4, DAD1-Like Lipase 4, PLA-I{gamma}1, phospholipase A I gamma 1 0.199 0.148
56 252638_at AT3G44540 FAR4, fatty acid reductase 4 0.192 -1.285
57 257735_at AT3G27400 [Pectin lyase-like superfamily protein] 0.190 1.279
58 251254_at AT3G62270 BOR2, REQUIRES HIGH BORON 2 0.190 0.361
59 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 0.188 -0.412
60 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 0.187 0.128
61 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] 0.186 -0.984
62 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 0.185 0.799
63 264434_at AT1G10340 [Ankyrin repeat family protein] 0.184 -0.287
64 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B 0.184 0.536
65 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 0.183 -0.969
66 250490_at AT5G09760 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.183 0.173
67 261846_at AT1G11540 [Sulfite exporter TauE/SafE family protein] 0.181 -0.087
68 262513_at AT1G34270 [Exostosin family protein] 0.180 -0.205
69 245117_at AT2G41560 ACA4, autoinhibited Ca(2+)-ATPase, isoform 4 0.178 0.075
70 266711_at AT2G46740 AtGulLO5, GulLO5, L -gulono-1,4-lactone ( L -GulL) oxidase 5 0.176 0.826
71 265214_at AT1G05000 AtPFA-DSP1, PFA-DSP1, plant and fungi atypical dual-specificity phosphatase 1 0.175 -0.099
72 258293_at AT3G23430 ATPHO1, ARABIDOPSIS PHOSPHATE 1, PHO1, phosphate 1 0.172 -0.052
73 246403_at AT1G57590 [Pectinacetylesterase family protein] 0.172 0.557
74 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.171 -0.321
75 258931_at AT3G10010 DML2, demeter-like 2 0.167 -0.677
76 266845_at AT2G26110 unknown 0.166 0.005
77 248060_at AT5G55560 [Protein kinase superfamily protein] 0.164 0.297
78 267382_at AT2G44300 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.163 0.133
79 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -0.712 -0.631
80 246798_at AT5G26930 GATA23, GATA transcription factor 23 -0.674 0.218
81 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.627 0.046
82 248253_at AT5G53290 CRF3, cytokinin response factor 3 -0.591 0.942
83 253044_at AT4G37290 unknown -0.581 -0.520
84 261476_at AT1G14480 [Ankyrin repeat family protein] -0.561 -0.328
85 262001_at AT1G33790 [jacalin lectin family protein] -0.557 0.967
86 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 -0.554 -0.520
87 250493_at AT5G09800 [ARM repeat superfamily protein] -0.551 -0.927
88 253419_at AT4G32780 [phosphoinositide binding] -0.548 -1.115
89 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.547 -0.674
90 245610_at AT4G14380 unknown -0.507 0.082
91 266637_at AT2G35600 ATBRXL1, ARABIDOPSIS THALIANA BREVIS RADIX LIKE 1, BRXL1, BREVIS RADIX-like 1 -0.468 -1.378
92 254689_at AT4G13710 [Pectin lyase-like superfamily protein] -0.424 0.533
93 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 -0.423 0.997
94 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.420 -1.010
95 251178_at AT3G63440 ATCKX6, CYTOKININ OXIDASE 6, ATCKX7, CKX6, cytokinin oxidase/dehydrogenase 6 -0.414 -0.525
96 262303_at AT1G70920 ATHB18, homeobox-leucine zipper protein 18, HB18, homeobox-leucine zipper protein 18 -0.409 -0.292
97 264611_at AT1G04680 [Pectin lyase-like superfamily protein] -0.403 0.047
98 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 -0.396 -0.972
99 266663_at AT2G25790 SKM1, STERILITY-REGULATING KINASE MEMBER 1 -0.395 -0.399
100 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.385 0.849
101 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 -0.385 -0.217
102 253915_at AT4G27280 [Calcium-binding EF-hand family protein] -0.381 0.053
103 263436_at AT2G28690 unknown -0.365 0.116
104 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 -0.356 0.556
105 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.355 0.517
106 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 -0.347 0.813
107 253791_at AT4G28640 IAA11, indole-3-acetic acid inducible 11 -0.345 0.660
108 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 -0.345 0.009
109 247739_at AT5G59240 [Ribosomal protein S8e family protein] -0.341 -0.642
110 251334_at AT3G61390 [RING/U-box superfamily protein] -0.339 -0.955
111 259858_at AT1G68400 [leucine-rich repeat transmembrane protein kinase family protein] -0.335 -0.057
112 253011_at AT4G37890 EDA40, embryo sac development arrest 40 -0.332 -0.545
113 255150_at AT4G08160 [glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein] -0.330 0.080
114 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] -0.323 -0.206
115 265856_at AT2G42430 ASL18, ASYMMETRIC LEAVES2-LIKE 18, LBD16, lateral organ boundaries-domain 16 -0.322 0.058
116 246576_at AT1G31650 ATROPGEF14, ROPGEF14, ROP (rho of plants) guanine nucleotide exchange factor 14 -0.320 -0.050
117 261451_at AT1G21060 unknown -0.316 -0.142
118 265742_at AT2G01290 RPI2, ribose-5-phosphate isomerase 2 -0.309 0.508
119 246108_at AT5G28630 [glycine-rich protein] -0.307 -0.080
120 254015_at AT4G26140 BGAL12, beta-galactosidase 12 -0.305 -1.099
121 267339_at AT2G39870 unknown -0.303 0.573
122 266507_at AT2G47860 SETH6 -0.302 -1.423
123 258907_at AT3G06370 ATNHX4, NHX4, sodium hydrogen exchanger 4 -0.301 -0.726
124 258782_at AT3G11750 FOLB1 -0.300 -0.414
125 265204_at AT2G36650 unknown -0.293 0.070
126 264839_at AT1G03630 POR C, protochlorophyllide oxidoreductase C, PORC -0.291 0.110
127 262283_at AT1G68590 PSRP3/1, plastid-specific ribosomal protein 3/1 -0.288 0.513
128 250098_at AT5G17350 unknown -0.288 -0.307
129 249874_at AT5G23070 AtTK1b, TK1b, thymidine kinase 1b -0.287 1.463
130 247643_at AT5G60450 ARF4, auxin response factor 4 -0.286 0.485
131 262302_at AT1G70910 DEP, DESPIERTO -0.283 -0.892
132 246796_at AT5G26770 unknown -0.281 0.307
133 250223_at AT5G14070 ROXY2 -0.275 -0.640
134 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 -0.269 1.050
135 245947_at AT5G19530 ACL5, ACAULIS 5 -0.267 -0.465
136 245141_at AT2G45400 BEN1, BRI1-5 ENHANCED 1 -0.260 0.487
137 246548_at AT5G14910 [Heavy metal transport/detoxification superfamily protein ] -0.259 0.323
138 251476_at AT3G59670 unknown -0.255 0.133
139 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.253 0.827
140 258397_at AT3G15357 unknown -0.251 0.494
141 264357_at AT1G03360 ATRRP4, ribosomal RNA processing 4, RRP4, ribosomal RNA processing 4 -0.250 0.165
142 254300_at AT4G22780 ACR7, ACT domain repeat 7 -0.248 -0.407
143 257824_at AT3G25290 [Auxin-responsive family protein] -0.248 0.682
144 256426_at AT1G33420 [RING/FYVE/PHD zinc finger superfamily protein] -0.248 -0.341
145 263736_at AT1G60000 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.247 0.488
146 248261_at AT5G53280 PDV1, PLASTID DIVISION1 -0.245 -0.142
147 247304_at AT5G63850 AAP4, amino acid permease 4 -0.245 -0.619
148 257071_at AT3G28180 ATCSLC04, Cellulose-synthase-like C4, ATCSLC4, CSLC04, CSLC04, Cellulose-synthase-like C4, CSLC4, CELLULOSE-SYNTHASE LIKE C4 -0.244 0.788
149 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 -0.243 0.730
150 247005_at AT5G67520 adenosine-5'-phosphosulfate (APS) kinase 4 -0.241 -0.554
151 252072_at AT3G51710 [D-mannose binding lectin protein with Apple-like carbohydrate-binding domain] -0.239 -1.093
152 263567_at AT2G15440 unknown -0.239 0.558
153 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.239 -0.905
154 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] -0.236 0.343
155 257026_at AT3G19200 unknown -0.234 -0.152