4.0:Information of module
20h Col-0
In comparison with upf1 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 3.483e-23
GO:0048511 rhythmic process BP 3.483e-23
GO:0019252 starch biosynthetic process BP 1.303e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0046173 polyol biosynthetic process BP 3.371e-22
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 1.476e-21
GO:0033517 myo-inositol hexakisphosphate metabolic ... BP 1.476e-21
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
20h Col-0		 Log2 signal ratio
upf1
1 249850_at AT5G23240 DJC76, DNA J protein C76 0.910 -0.208
2 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.795 -0.224
3 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.763 -0.054
4 256060_at AT1G07050 [CCT motif family protein] 0.592 -0.250
5 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 0.524 -0.088
6 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] 0.521 -0.036
7 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 0.502 0.121
8 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.489 -0.195
9 257832_at AT3G26740 CCL, CCR-like 0.432 -0.135
10 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.429 -0.092
11 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.418 -0.147
12 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 0.410 -0.193
13 246929_at AT5G25210 unknown 0.404 -0.123
14 263412_at AT2G28720 [Histone superfamily protein] 0.402 -0.142
15 260688_at AT1G17665 unknown 0.393 -0.191
16 253322_at AT4G33980 unknown 0.390 -0.230
17 262533_at AT1G17090 unknown 0.374 -0.210
18 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.374 -0.027
19 253581_at AT4G30660 [Low temperature and salt responsive protein family] 0.369 -0.123
20 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 0.369 -0.229
21 259595_at AT1G28050 BBX13, B-box domain protein 13 0.364 -0.120
22 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.361 -0.184
23 263495_at AT2G42530 COR15B, cold regulated 15b 0.355 -0.265
24 267036_at AT2G38465 unknown 0.353 -0.171
25 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.345 -0.079
26 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.315 -0.307
27 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 0.314 0.148
28 262296_at AT1G27630 CYCT1;3, cyclin T 1;3 0.314 -0.114
29 266839_at AT2G25930 ELF3, EARLY FLOWERING 3, PYK20 0.310 -0.060
30 248744_at AT5G48250 BBX8, B-box domain protein 8 0.309 -0.165
31 245600_at AT4G14230 unknown 0.301 -0.091
32 249456_at AT5G39410 [Saccharopine dehydrogenase ] 0.301 -0.158
33 255070_at AT4G09020 ATISA3, ISA3, isoamylase 3 0.299 -0.167
34 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 0.297 -0.092
35 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 0.295 -0.094
36 255953_at AT1G22070 TGA3, TGA1A-related gene 3 0.287 0.058
37 250194_at AT5G14550 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.283 -0.030
38 250987_at AT5G02860 [Pentatricopeptide repeat (PPR) superfamily protein] 0.281 0.081
39 253627_at AT4G30650 [Low temperature and salt responsive protein family] 0.275 -0.142
40 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 0.273 -0.230
41 247043_at AT5G66880 SNRK2-3, SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3, SNRK2.3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3, SRK2I 0.273 -0.182
42 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 0.266 -0.092
43 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.264 -0.190
44 253835_at AT4G27820 BGLU9, beta glucosidase 9 0.263 0.018
45 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 0.259 0.083
46 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 0.259 -0.157
47 251789_at AT3G55450 PBL1, PBS1-like 1 0.256 -0.046
48 267280_at AT2G19450 ABX45, AS11, ATDGAT, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, AtDGAT1, DGAT1, acyl-CoA:diacylglycerol acyltransferase 1, RDS1, TAG1, TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1 0.255 -0.078
49 264071_at AT2G27920 SCPL51, serine carboxypeptidase-like 51 0.250 0.018
50 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.250 -0.094
51 245789_at AT1G32090 [early-responsive to dehydration stress protein (ERD4)] 0.250 -0.303
52 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.248 0.209
53 252468_at AT3G46970 ATPHS2, Arabidopsis thaliana alpha-glucan phosphorylase 2, PHS2, alpha-glucan phosphorylase 2 0.244 -0.093
54 256746_at AT3G29320 PHS1, alpha-glucan phosphorylase 1 0.241 -0.082
55 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 0.241 -0.211
56 246371_at AT1G51940 LYK3, LysM-containing receptor-like kinase 3 0.237 -0.149
57 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 0.236 -0.263
58 252464_at AT3G47160 [RING/U-box superfamily protein] 0.233 -0.064
59 251919_at AT3G53800 Fes1B, Fes1B 0.229 -0.239
60 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.923 0.364
61 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 -0.913 0.242
62 261263_at AT1G26790 [Dof-type zinc finger DNA-binding family protein] -0.907 -0.002
63 260380_at AT1G73870 BBX16, B-box domain protein 16, COL7, CONSTANS-LIKE 7 -0.694 0.191
64 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.671 -0.033
65 252429_at AT3G47500 CDF3, cycling DOF factor 3 -0.660 -0.011
66 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.648 0.436
67 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 -0.632 0.276
68 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] -0.618 0.018
69 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.603 -0.000
70 260603_at AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.579 0.176
71 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 -0.557 -0.049
72 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.540 0.425
73 249415_at AT5G39660 CDF2, cycling DOF factor 2 -0.522 0.212
74 265387_at AT2G20670 unknown -0.503 -0.062
75 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E -0.486 0.299
76 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 -0.483 0.148
77 250327_at AT5G12050 unknown -0.463 -0.384
78 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 -0.460 0.056
79 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] -0.452 0.038
80 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 -0.445 0.017
81 264238_at AT1G54740 unknown -0.444 -0.160
82 260956_at AT1G06040 BBX24, B-box domain protein 24, STO, SALT TOLERANCE -0.439 0.056
83 266672_at AT2G29650 ANTR1, anion transporter 1, PHT4;1, phosphate transporter 4;1 -0.405 0.015
84 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 -0.402 0.567
85 266363_at AT2G41250 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.401 0.261
86 251793_at AT3G55580 [Regulator of chromosome condensation (RCC1) family protein] -0.401 -0.066
87 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 -0.396 0.519
88 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 -0.384 0.566
89 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.370 -0.084
90 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.334 -0.021
91 257650_at AT3G16800 [Protein phosphatase 2C family protein] -0.333 -0.100
92 252917_at AT4G38960 BBX19, B-box domain protein 19 -0.321 0.135
93 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 -0.320 -0.162
94 247474_at AT5G62280 unknown -0.319 -0.303
95 253125_at AT4G36040 DJC23, DNA J protein C23, J11, DnaJ11 -0.310 0.132
96 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.307 0.062
97 262290_at AT1G70985 [hydroxyproline-rich glycoprotein family protein] -0.301 -0.021
98 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 -0.296 -0.045
99 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.296 0.163
100 253814_at AT4G28290 unknown -0.295 0.066
101 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 -0.290 -0.188
102 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.287 -0.187
103 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 -0.283 0.293
104 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.279 0.204
105 254016_at AT4G26150 CGA1, cytokinin-responsive gata factor 1, GATA22, GATA TRANSCRIPTION FACTOR 22, GNL, GNC-LIKE -0.275 0.214
106 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 -0.275 -0.108
107 249798_at AT5G23730 EFO2, EARLY FLOWERING BY OVEREXPRESSION 2, RUP2, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2 -0.273 0.078
108 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] -0.271 -0.074
109 247452_at AT5G62430 CDF1, cycling DOF factor 1 -0.271 0.085
110 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.271 0.550
111 247933_at AT5G56980 unknown -0.269 0.045
112 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE -0.268 0.214
113 246142_at AT5G19970 unknown -0.265 0.000
114 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.264 0.108
115 255627_at AT4G00955 unknown -0.261 0.158
116 254544_at AT4G19820 [Glycosyl hydrolase family protein with chitinase insertion domain] -0.259 0.088
117 263739_at AT2G21320 BBX18, B-box domain protein 18 -0.256 0.354
118 249932_at AT5G22390 unknown -0.256 0.165