4.0:Information of module
10min Reillumination IP RNA
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0048573 photoperiodism, flowering BP 7.200e-16
GO:0009648 photoperiodism BP 1.262e-15
GO:0010228 vegetative to reproductive phase transit... BP 2.033e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044238 primary metabolic process BP 2.393e-06
GO:0071704 organic substance metabolic process BP 3.212e-06
GO:0009987 cellular process BP 1.581e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
10min Reillumination IP RNA		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 262952_at AT1G75770 unknown 0.336 0.032
2 255232_at AT4G05330 AGD13, ARF-GAP domain 13 0.311 -0.950
3 251554_at AT3G58670 unknown 0.275 0.661
4 260273_at AT1G80550 [Pentatricopeptide repeat (PPR) superfamily protein] 0.269 0.082
5 250124_at AT5G16480 AtPFA-DSP5, PFA-DSP5, plant and fungi atypical dual-specificity phosphatase 5 0.264 0.132
6 254362_at AT4G22160 unknown 0.264 0.111
7 249174_at AT5G42900 COR27, cold regulated gene 27 0.262 -0.471
8 265394_at AT2G20725 [CAAX amino terminal protease family protein] 0.256 0.844
9 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.251 0.085
10 266811_at AT2G44850 unknown 0.251 -1.023
11 258135_at AT3G24506 unknown 0.248 1.071
12 250310_at AT5G12230 MED19A 0.244 0.715
13 248509_at AT5G50335 unknown 0.241 -0.376
14 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] 0.240 0.924
15 261941_at AT1G22490 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.240 -0.580
16 254626_at AT4G18400 unknown 0.239 -0.175
17 247833_at AT5G58575 unknown 0.237 -0.107
18 250972_at AT5G02840 LCL1, LHY/CCA1-like 1 0.236 0.089
19 245261_at AT4G14385 unknown 0.222 -0.189
20 250755_at AT5G05750 [DNAJ heat shock N-terminal domain-containing protein] 0.221 0.002
21 258092_at AT3G14595 [Ribosomal protein L18ae family] 0.216 1.313
22 255931_at AT1G12710 AtPP2-A12, phloem protein 2-A12, PP2-A12, phloem protein 2-A12 0.214 0.863
23 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 0.211 0.970
24 250555_at AT5G07950 unknown 0.210 0.207
25 246951_at AT5G04880 [expressed protein] 0.208 -0.802
26 245797_at AT1G45230 unknown 0.208 0.393
27 245778_at AT1G73530 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.205 0.026
28 248869_at AT5G46840 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.204 0.611
29 266238_at AT2G29400 PP1-AT, PROTEIN PHOSPHATASE 1, TOPP1, type one protein phosphatase 1 0.204 0.973
30 249872_at AT5G23130 [Peptidoglycan-binding LysM domain-containing protein] 0.202 -0.957
31 249990_at AT5G18540 unknown 0.202 -0.149
32 265142_at AT1G51360 ATDABB1, DIMERIC A/B BARREL DOMAINS-PROTEIN 1, DABB1, dimeric A/B barrel domainS-protein 1 0.202 0.645
33 257018_at AT3G19630 [Radical SAM superfamily protein] 0.200 1.016
34 260964_at AT1G45050 ATUBC2-1, UBC15, Arabidopsis thaliana ubiquitin-conjugating enzyme 15 0.200 0.597
35 258126_at AT3G24490 [Alcohol dehydrogenase transcription factor Myb/SANT-like family protein] 0.199 0.072
36 250856_at AT5G04810 [pentatricopeptide (PPR) repeat-containing protein] 0.196 0.311
37 250017_at AT5G18140 DJC69, DNA J protein A69 0.195 0.270
38 263839_at AT2G36900 ATMEMB11, MEMB11, membrin 11 0.195 0.956
39 249524_at AT5G38520 [alpha/beta-Hydrolases superfamily protein] 0.194 0.657
40 246319_at AT3G56680 [Single-stranded nucleic acid binding R3H protein] 0.191 0.832
41 246506_at AT5G16110 unknown 0.189 0.137
42 250175_at AT5G14390 [alpha/beta-Hydrolases superfamily protein] 0.188 0.496
43 249966_at AT5G19030 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.188 0.725
44 262498_at AT1G21710 ATOGG1, ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, OGG1, 8-oxoguanine-DNA glycosylase 1 0.187 0.135
45 267405_at AT2G33740 CUTA 0.186 0.846
46 261823_at AT1G11400 PYM, partner of Y14-MAGO 0.184 0.725
47 253484_at AT4G31720 STG1, SALT TOLERANCE DURING GERMINATION 1, TAF10, TBP-ASSOCIATED FACTOR 10, TAFII15, TBP-associated factor II 15 0.183 0.575
48 256133_at AT1G13570 [F-box/RNI-like superfamily protein] 0.182 0.508
49 250567_at AT5G08090 unknown 0.182 0.081
50 254477_at AT4G20380 LSD1, LESION SIMULATING DISEASE 1 0.181 1.181
51 255878_at AT2G40620 [Basic-leucine zipper (bZIP) transcription factor family protein] 0.181 0.394
52 266003_at AT2G37320 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.181 -0.858
53 249544_at AT5G38110 ASF1B, anti- silencing function 1b, SGA01, SGA1 0.181 0.552
54 266051_at AT2G40760 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.180 1.401
55 267375_at AT2G26300 ATGPA1, ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, GP ALPHA 1, G protein alpha subunit 1, GPA1, G PROTEIN ALPHA SUBUNIT 1 0.180 -0.147
56 250896_at AT5G03560 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.178 -0.234
57 264265_at AT1G09280 unknown 0.178 0.394
58 263288_at AT2G36130 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.177 0.569
59 266923_at AT2G45980 ATI1, ATG8-interacting protein 1 0.177 1.014
60 252918_at AT4G38980 unknown 0.174 -0.017
61 247908_at AT5G57440 GPP2, GLYCEROL-3-PHOSPHATASE 2, GS1 0.174 0.114
62 257818_at AT3G25120 [Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein] 0.173 1.330
63 261084_at AT1G07440 [NAD(P)-binding Rossmann-fold superfamily protein] 0.172 -0.076
64 261757_at AT1G08210 [Eukaryotic aspartyl protease family protein] 0.172 0.599
65 250837_at AT5G04620 ATBIOF, biotin F, BIO4, biotin 4, BIOF, biotin F 0.171 0.585
66 256792_at AT3G22150 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.170 0.899
67 259378_at AT3G16310 1 0.170 0.567
68 261272_at AT1G26665 [Mediator complex, subunit Med10] 0.169 0.532
69 264586_at AT1G05160 ATKAO1, CYP88A3, cytochrome P450, family 88, subfamily A, polypeptide 3, KAO1, ENT-KAURENOIC ACID OXYDASE 1 0.169 0.134
70 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC -0.416 -1.557
71 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 -0.247 -0.266
72 256577_at AT3G28220 [TRAF-like family protein] -0.224 -0.621
73 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 -0.218 -0.899
74 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.184 -0.870
75 263221_at AT1G30620 HSR8, HIGH SUGAR RESPONSE8, MUR4, MURUS 4, UXE1, UDP-D-XYLOSE 4-EPIMERASE 1 -0.176 0.218
76 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.165 -0.964
77 260987_at AT1G53590 NTMC2T6.1, NTMC2TYPE6.1 -0.144 -0.490
78 250161_at AT5G15240 [Transmembrane amino acid transporter family protein] -0.143 -0.562
79 258601_at AT3G02760 [Class II aaRS and biotin synthetases superfamily protein] -0.142 0.831
80 257846_at AT3G12910 [NAC (No Apical Meristem) domain transcriptional regulator superfamily protein] -0.140 -0.496
81 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 -0.139 -0.434
82 256952_at AT3G21160 MANIA, ALPHA-MANNOSIDASE IA, MNS2, alpha-mannosidase 2 -0.139 -0.485
83 255259_at AT4G05020 NDB2, NAD(P)H dehydrogenase B2 -0.138 0.802
84 263219_at AT1G30600 [Subtilase family protein] -0.133 -0.140
85 246500_at AT5G16270 ATRAD21.3, ARABIDOPSIS HOMOLOG OF RAD21 3, SYN4, sister chromatid cohesion 1 protein 4 -0.132 0.290
86 262766_at AT1G13160 [ARM repeat superfamily protein] -0.131 -0.371
87 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.128 -0.305
88 244962_at ATCG01050 NDHD -0.128 -0.821
89 254847_at AT4G11850 MEE54, maternal effect embryo arrest 54, PLDGAMMA1, phospholipase D gamma 1 -0.128 -0.484
90 263130_at AT1G78650 POLD3 -0.128 0.950
91 244998_at ATCG00180 RPOC1 -0.126 0.023
92 264932_at AT1G61240 unknown -0.126 -0.504
93 245047_at ATCG00020 PSBA, photosystem II reaction center protein A -0.124 -0.297
94 251752_at AT3G55740 ATPROT2, PROLINE TRANSPORTER 2, PROT2, proline transporter 2 -0.119 -0.380
95 267645_at AT2G32860 BGLU33, beta glucosidase 33 -0.117 -0.750
96 260143_at AT1G71880 ATSUC1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, SUC1, sucrose-proton symporter 1 -0.116 0.327
97 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase -0.115 -0.179
98 247153_at AT5G65700 BAM1, BARELY ANY MERISTEM 1 -0.115 0.917
99 250021_at AT5G18190 [Protein kinase family protein] -0.114 0.965
100 262871_at AT1G65010 [INVOLVED IN: flower development] -0.114 -0.329
101 258179_at AT3G21690 [MATE efflux family protein] -0.114 0.518
102 259015_at AT3G07350 unknown -0.114 -0.384
103 251916_at AT3G53960 [Major facilitator superfamily protein] -0.114 -0.741
104 259982_at AT1G76410 ATL8 -0.112 -0.535
105 264330_at AT1G04120 ABCC5, ATP-binding cassette C5, ATABCC5, Arabidopsis thaliana ATP-binding cassette C5, ATMRP5, multidrug resistance-associated protein 5, MRP5, MULTIDRUG RESISTANCE PROTEIN 5, MRP5, multidrug resistance-associated protein 5 -0.112 1.081
106 250490_at AT5G09760 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.111 0.173
107 260374_at AT1G73960 TAF2, TBP-associated factor 2 -0.111 0.004
108 252149_at AT3G51290 APSR1, Altered Phosphate Starvation Response 1 -0.109 -0.848
109 254922_at AT4G11370 RHA1A, RING-H2 finger A1A -0.109 -0.816
110 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 -0.109 1.407
111 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] -0.108 -1.057
112 250787_at AT5G05560 APC1, anaphase promoting complex 1, EMB2771, EMBRYO DEFECTIVE 2771 -0.107 -0.186
113 247425_at AT5G62550 unknown -0.106 -0.498
114 258555_at AT3G06860 ATMFP2, MULTIFUNCTIONAL PROTEIN 2, MFP2, multifunctional protein 2 -0.105 1.523
115 266299_at AT2G29450 AT103-1A, ATGSTU1, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, ATGSTU5, glutathione S-transferase tau 5, GSTU5, glutathione S-transferase tau 5 -0.104 0.921
116 246660_at AT5G35180 [FUNCTIONS IN: phosphoinositide binding] -0.104 0.267
117 248615_at AT5G49570 AtPNG1, peptide-N-glycanase 1, PNG1, peptide-N-glycanase 1 -0.100 -0.332
118 260629_at AT1G62330 [O-fucosyltransferase family protein] -0.097 -0.164
119 254904_at AT4G11160 [Translation initiation factor 2, small GTP-binding protein] -0.097 0.601
120 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.096 0.531
121 267376_at AT2G26330 ER, ERECTA, QRP1, QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1 -0.094 0.728
122 250077_at AT5G16680 [RING/FYVE/PHD zinc finger superfamily protein] -0.094 0.261
123 255460_at AT4G02800 unknown -0.093 0.518
124 252533_at AT3G46110 [LOCATED IN: plasma membrane] -0.093 -0.756
125 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] -0.092 -0.410
126 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 -0.091 1.126
127 255039_at AT4G09570 ATCPK4, CPK4, calcium-dependent protein kinase 4 -0.091 0.692
128 250279_at AT5G13200 [GRAM domain family protein] -0.091 -0.542
129 267618_at AT2G26760 CYCB1;4, Cyclin B1;4 -0.091 0.405
130 266017_at AT2G18690 unknown -0.090 0.242
131 246763_at AT5G27150 AT-NHX1, ATNHX, ATNHX1, NHX1, Na+/H+ exchanger 1 -0.090 0.537
132 260944_at AT1G45130 AtBGAL5, BGAL5, beta-galactosidase 5 -0.090 0.926
133 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor -0.089 0.452
134 264352_at AT1G03270 unknown -0.089 0.129
135 256908_at AT3G24040 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.088 0.322
136 249095_at AT5G43900 ATMYA2, ARABIDOPSIS MYOSIN 2, MYA2, myosin 2, XI-2, MYOSIN X1 2, XI-6, MYOSIN XI-6 -0.088 0.758
137 258132_at AT3G24550 ATPERK1, proline-rich extensin-like receptor kinase 1, PERK1, proline-rich extensin-like receptor kinase 1 -0.088 1.341