4.0:Information of module
Col ozone 3h
In comparison with Shoot apex vegetative help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 4.208e-57
GO:0010243 response to organonitrogen compound BP 2.809e-55
GO:1901698 response to nitrogen compound BP 2.127e-42
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 7.486e-34
GO:0043414 macromolecule methylation BP 3.491e-28
GO:0032259 methylation BP 7.844e-28
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col ozone 3h		 Log2 signal ratio
Shoot apex vegetative
1 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.949 -0.893
2 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.909 -0.273
3 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.877 -0.400
4 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.867 0.169
5 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.863 -0.967
6 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.841 -0.156
7 264774_at AT1G22890 unknown 0.829 -0.628
8 258606_at AT3G02840 [ARM repeat superfamily protein] 0.814 -0.539
9 257540_at AT3G21520 AtDMP1, Arabidopsis thaliana DUF679 domain membrane protein 1, DMP1, DUF679 domain membrane protein 1 0.812 -0.419
10 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.786 -0.748
11 249770_at AT5G24110 ATWRKY30, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY30, WRKY DNA-binding protein 30 0.777 -0.759
12 261394_at AT1G79680 ATWAKL10, WAKL10, WALL ASSOCIATED KINASE (WAK)-LIKE 10 0.764 -0.488
13 252346_at AT3G48650 [pseudogene] 0.755 -1.030
14 257846_at AT3G12910 [NAC (No Apical Meristem) domain transcriptional regulator superfamily protein] 0.732 -0.393
15 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.731 -0.550
16 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 0.711 -0.809
17 254922_at AT4G11370 RHA1A, RING-H2 finger A1A 0.710 -0.736
18 259479_at AT1G19020 unknown 0.687 0.391
19 254408_at AT4G21390 B120 0.681 -0.840
20 262085_at AT1G56060 unknown 0.656 -0.143
21 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] 0.655 -1.200
22 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.652 -0.783
23 246858_at AT5G25930 [Protein kinase family protein with leucine-rich repeat domain] 0.616 -0.514
24 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.604 0.968
25 254318_at AT4G22530 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.604 -0.329
26 264746_at AT1G62300 ATWRKY6, WRKY6 0.588 0.344
27 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.578 -0.555
28 259443_at AT1G02360 [Chitinase family protein] 0.576 -0.302
29 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] 0.576 0.149
30 264866_at AT1G24140 [Matrixin family protein] 0.575 -1.065
31 246370_at AT1G51920 unknown 0.571 -1.041
32 258100_at AT3G23550 [MATE efflux family protein] 0.567 -0.279
33 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.559 0.204
34 250267_at AT5G12930 unknown 0.557 -0.464
35 255654_at AT4G00970 CRK41, cysteine-rich RLK (RECEPTOR-like protein kinase) 41 0.548 -1.201
36 264757_at AT1G61360 [S-locus lectin protein kinase family protein] 0.538 -0.811
37 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 0.531 -0.731
38 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] 0.528 -1.410
39 250796_at AT5G05300 unknown 0.522 -0.108
40 263182_at AT1G05575 unknown 0.499 0.336
41 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 0.496 1.188
42 266658_at AT2G25735 unknown 0.492 -0.389
43 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.488 -0.469
44 257206_at AT3G16530 [Legume lectin family protein] 0.488 0.893
45 265008_at AT1G61560 ATMLO6, MILDEW RESISTANCE LOCUS O 6, MLO6, MILDEW RESISTANCE LOCUS O 6 0.488 -0.912
46 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 0.481 -0.667
47 253044_at AT4G37290 unknown 0.479 -0.428
48 251769_at AT3G55950 ATCRR3, CCR3, CRINKLY4 related 3 0.478 0.017
49 255753_at AT1G18570 AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 0.478 0.319
50 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.475 -0.952
51 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] 0.460 -0.637
52 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.456 -0.041
53 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.446 -1.108
54 252133_at AT3G50900 unknown 0.445 0.730
55 266017_at AT2G18690 unknown 0.440 -0.108
56 249928_at AT5G22250 AtCAF1b, CCR4- associated factor 1b, CAF1b, CCR4- associated factor 1b 0.438 -0.263
57 245711_at AT5G04340 C2H2, CZF2, COLD INDUCED ZINC FINGER PROTEIN 2, ZAT6, zinc finger of Arabidopsis thaliana 6 0.436 0.010
58 253779_at AT4G28490 HAE, HAESA, RLK5, RECEPTOR-LIKE PROTEIN KINASE 5 0.435 -0.382
59 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.430 -0.360
60 252053_at AT3G52400 ATSYP122, SYP122, syntaxin of plants 122 0.428 0.157
61 259272_at AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 0.423 -0.116
62 267028_at AT2G38470 ATWRKY33, WRKY DNA-BINDING PROTEIN 33, WRKY33, WRKY DNA-binding protein 33 0.404 1.217
63 259033_at AT3G09405 [Pectinacetylesterase family protein] 0.400 0.296
64 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.395 -0.814
65 264663_at AT1G09970 LRR XI-23, RLK7, receptor-like kinase 7 0.395 -0.083
66 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.386 -0.281
67 253796_at AT4G28460 unknown 0.386 0.318
68 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor 0.377 -0.249
69 263935_at AT2G35930 AtPUB23, PUB23, plant U-box 23 0.374 -0.244
70 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.373 -0.908
71 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.370 -0.060
72 249987_at AT5G18490 unknown 0.370 0.560
73 253992_at AT4G26060 [Ribosomal protein L18ae family] 0.369 0.019
74 253414_at AT4G33050 AtIQM1, EDA39, embryo sac development arrest 39, IQM1, IQ-motif protein 1 0.363 -0.925
75 254487_at AT4G20780 CML42, calmodulin like 42 0.363 -0.155
76 252533_at AT3G46110 [LOCATED IN: plasma membrane] 0.360 -0.855
77 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 0.357 0.364
78 258787_at AT3G11840 PUB24, plant U-box 24 0.355 -0.588
79 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.349 0.111
80 258282_at AT3G26910 [hydroxyproline-rich glycoprotein family protein] 0.347 -0.062
81 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.347 0.355
82 256799_at AT3G18560 unknown 0.345 0.445
83 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.339 0.252
84 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 0.335 1.109
85 255479_at AT4G02380 AtLEA5, Arabidopsis thaliana late embryogenensis abundant like 5, SAG21, senescence-associated gene 21 0.333 0.771
86 254427_at AT4G21190 emb1417, embryo defective 1417 -0.414 0.278
87 261921_at AT1G65900 unknown -0.396 1.161
88 256890_at AT3G23830 AtGRP4, GR-RBP4, GRP4, glycine-rich RNA-binding protein 4 -0.379 0.448
89 245465_at AT4G16590 ATCSLA01, cellulose synthase-like A01, ATCSLA1, CELLULOSE SYNTHASE-LIKE A1, CSLA01, CSLA01, cellulose synthase-like A01 -0.356 -0.095
90 260292_at AT1G63680 APG13, ALBINO OR PALE-GREEN 13, ATMURE, MURE, PDE316, PIGMENT DEFECTIVE EMBRYO 316 -0.343 0.629
91 261762_at AT1G15510 ATECB2, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, ECB2, EARLY CHLOROPLAST BIOGENESIS2, VAC1, VANILLA CREAM 1 -0.336 -0.274
92 266687_at AT2G19670 ATPRMT1A, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, PRMT1A, protein arginine methyltransferase 1A -0.333 1.553
93 261248_at AT1G20030 [Pathogenesis-related thaumatin superfamily protein] -0.326 1.036
94 250528_at AT5G08600 [U3 ribonucleoprotein (Utp) family protein] -0.307 0.061
95 264271_at AT1G60270 BGLU6, beta glucosidase 6 -0.304 -0.190
96 262236_at AT1G48330 unknown -0.304 0.370
97 246746_at AT5G27820 [Ribosomal L18p/L5e family protein] -0.290 1.385
98 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] -0.284 -0.916
99 257875_at AT3G17120 unknown -0.280 0.668
100 253351_at AT4G33700 unknown -0.273 0.111
101 250992_at AT5G02260 ATEXP9, ATEXPA9, expansin A9, ATHEXP ALPHA 1.10, EXP9, EXPA9, expansin A9 -0.272 -0.644
102 248753_at AT5G47630 mtACP3, mitochondrial acyl carrier protein 3 -0.269 1.013
103 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 -0.265 -1.114
104 251355_at AT3G61100 [Putative endonuclease or glycosyl hydrolase] -0.256 0.054
105 266951_at AT2G18940 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.250 0.020
106 262748_at AT1G28610 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.249 0.666
107 246797_at AT5G26790 unknown -0.248 0.681
108 263688_at AT1G26920 unknown -0.241 0.590
109 265730_at AT2G32220 [Ribosomal L27e protein family] -0.238 1.005
110 250412_at AT5G11150 ATVAMP713, vesicle-associated membrane protein 713, VAMP713, VAMP713, vesicle-associated membrane protein 713 -0.234 0.089
111 262706_at AT1G16280 AtRH36, Arabidopsis thaliana RNA helicase 36, RH36, RNA helicase 36, SWA3, SLOW WALKER 3 -0.232 1.227
112 265991_at AT2G24120 PDE319, PIGMENT DEFECTIVE 319, SCA3, SCABRA 3 -0.230 0.555
113 266253_at AT2G27840 HD2D, histone deacetylase 2D, HDA13, HISTONE DEACETYLASE 13, HDT04, HDT4 -0.229 0.420
114 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.228 0.607
115 263912_at AT2G36390 BE3, BRANCHING ENZYME 3, SBE2.1, starch branching enzyme 2.1 -0.228 -0.156
116 248984_at AT5G45140 NRPC2, nuclear RNA polymerase C2 -0.227 0.766
117 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.225 0.726
118 253021_at AT4G38050 [Xanthine/uracil permease family protein] -0.224 0.868
119 264142_at AT1G78930 [Mitochondrial transcription termination factor family protein] -0.219 -0.075
120 260781_at AT1G14620 DECOY, DECOY -0.217 0.865
121 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 -0.213 0.840
122 248891_at AT5G46280 MCM3, MINICHROMOSOME MAINTENANCE 3 -0.213 0.541
123 250744_at AT5G05840 unknown -0.212 -0.266
124 258232_at AT3G27750 EMB3123, EMBRYO DEFECTIVE 3123, THA8, Thylakoid Assembly 8 -0.208 0.419
125 263548_at AT2G21660 ATGRP7, GLYCINE RICH PROTEIN 7, CCR2, cold, circadian rhythm, and rna binding 2, GR-RBP7, GLYCINE-RICH RNA-BINDING PROTEIN 7, GRP7, GLYCINE-RICH RNA-BINDING PROTEIN 7 -0.207 2.065
126 261549_at AT1G63470 AHL5, AT-hook motif nuclear localized protein 5 -0.205 0.265
127 254080_at AT4G25630 ATFIB2, FIB2, fibrillarin 2 -0.201 0.170
128 261603_at AT1G49600 ATRBP47A, RNA-binding protein 47A, RBP47A, RNA-binding protein 47A -0.201 1.518
129 264731_at AT1G62150 [Mitochondrial transcription termination factor family protein] -0.198 -0.206
130 260489_at AT1G51610 [Cation efflux family protein] -0.198 1.088
131 253092_at AT4G37380 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.194 -0.363
132 252143_at AT3G51150 [ATP binding microtubule motor family protein] -0.189 0.188
133 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 -0.185 -0.017
134 247036_at AT5G67130 [PLC-like phosphodiesterases superfamily protein] -0.184 0.172
135 245644_at AT1G25320 [Leucine-rich repeat protein kinase family protein] -0.184 0.620
136 259942_at AT1G71260 ATWHY2, WHIRLY 2, WHY2, WHIRLY 2 -0.184 1.513
137 263864_at AT2G04530 CPZ, TRZ2, TRNASE Z 2 -0.183 1.131
138 251271_at AT3G62050 [Putative endonuclease or glycosyl hydrolase] -0.182 0.024
139 258475_at AT3G02660 EMB2768, EMBRYO DEFECTIVE 2768, FAC31, EMBRYONIC FACTOR 31 -0.182 0.460
140 247224_at AT5G65080 AGL68, AGAMOUS-like 68, MAF5, MADS AFFECTING FLOWERING 5 -0.180 -0.202
141 267174_at AT2G37600 [Ribosomal protein L36e family protein] -0.180 1.024
142 251864_at AT3G54920 PMR6, powdery mildew resistant 6 -0.179 0.649
143 245502_at AT4G15640 unknown -0.178 -0.138
144 251699_at AT3G56630 CYP94D2, cytochrome P450, family 94, subfamily D, polypeptide 2 -0.178 -0.880
145 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 -0.176 0.364
146 260677_at AT1G07910 AtRLG1, AtRLG1, ATRNL, ARABIDOPSIS THALIANA RNA LIGASE, RNL, RNAligase -0.174 -0.120
147 263083_at AT2G27190 ATPAP1, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, ATPAP12, PURPLE ACID PHOSPHATASE 12, PAP1, PURPLE ACID PHOSPHATASE 1, PAP12, purple acid phosphatase 12 -0.173 1.294
148 265383_at AT2G16780 MSI02, MSI2, MULTICOPY SUPPRESSOR OF IRA1 2, NFC02, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2 -0.173 1.345
149 247461_at AT5G62100 ATBAG2, BCL-2-associated athanogene 2, BAG2, BCL-2-associated athanogene 2 -0.172 -1.030
150 250546_at AT5G08180 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] -0.172 1.353
151 249014_at AT5G44710 unknown -0.171 0.242
152 253213_at AT4G34910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.170 -0.048
153 258995_at AT3G01790 [Ribosomal protein L13 family protein] -0.170 0.238
154 252942_at AT4G39300 unknown -0.170 0.948
155 267421_at AT2G35040 [AICARFT/IMPCHase bienzyme family protein] -0.168 0.593
156 245849_at AT5G13520 [peptidase M1 family protein] -0.167 0.372
157 253892_at AT4G27620 unknown -0.167 0.575
158 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 -0.167 0.996
159 251611_at AT3G57940 unknown -0.166 -0.037
160 261131_at AT1G19835 unknown -0.166 0.469
161 251753_at AT3G55760 unknown -0.166 0.106
162 253921_at AT4G26900 AT-HF, HIS HF, HISN4 -0.165 -0.009
163 248283_at AT5G52920 PKP-BETA1, plastidic pyruvate kinase beta subunit 1, PKP1, PLASTIDIAL PYRUVATE KINASE 1, PKP2, PLASTIDIAL PYRUVATE KINASE 2 -0.164 0.373
164 262818_at AT1G11755 LEW1, LEAF WILTING 1 -0.164 -0.087
165 257619_at AT3G24810 ICK3, KRP5, kip-related protein 5 -0.164 -0.007
166 246572_at AT5G15010 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.160 -0.495
167 245106_at AT2G41650 unknown -0.160 0.252
168 250326_at AT5G12080 ATMSL10, MSL10, mechanosensitive channel of small conductance-like 10 -0.160 0.219
169 259761_at AT1G77590 LACS9, long chain acyl-CoA synthetase 9 -0.160 0.684