4.0:Information of module
ALC Toc1 light-dark Mock
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010073 meristem maintenance BP 1.487e-07
GO:0048509 regulation of meristem development BP 3.707e-07
GO:0048507 meristem development BP 6.950e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044550 secondary metabolite biosynthetic proces... BP 3.092e-04
GO:0016144 S-glycoside biosynthetic process BP 5.472e-04
GO:0019758 glycosinolate biosynthetic process BP 5.472e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ALC Toc1 light-dark Mock		 Log2 signal ratio
Leafminer damaged seedlings
1 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.516 0.024
2 247518_at AT5G61800 [Pentatricopeptide repeat (PPR) superfamily protein] 0.485 -0.034
3 263742_at AT2G20625 unknown 0.483 0.045
4 262470_at AT1G50180 [NB-ARC domain-containing disease resistance protein] 0.459 -0.057
5 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] 0.442 -0.236
6 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.440 0.285
7 256125_at AT1G18250 ATLP-1 0.422 -0.255
8 250942_at AT5G03350 [Legume lectin family protein] 0.416 -0.003
9 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.399 0.048
10 258675_at AT3G08770 LTP6, lipid transfer protein 6 0.388 0.171
11 265197_at AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 0.387 0.003
12 248912_at AT5G45670 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.379 -0.270
13 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 0.365 0.068
14 253270_at AT4G34160 CYCD3, CYCD3;1, CYCLIN D3;1 0.359 -0.367
15 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.349 0.212
16 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] 0.347 -0.170
17 260565_at AT2G43800 [Actin-binding FH2 (formin homology 2) family protein] 0.345 -0.080
18 263485_at AT2G29890 ATVLN1, VLN1, villin 1 0.342 -0.266
19 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] 0.341 -0.001
20 255527_at AT4G02360 unknown 0.339 0.911
21 254544_at AT4G19820 [Glycosyl hydrolase family protein with chitinase insertion domain] 0.338 -0.375
22 258115_at AT3G14670 unknown 0.335 -0.030
23 245800_at AT1G46264 AT-HSFB4, HSFB4, heat shock transcription factor B4, SCZ, SCHIZORIZA 0.323 -0.146
24 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 0.318 0.951
25 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.309 -0.383
26 263034_at AT1G24020 MLP423, MLP-like protein 423 0.305 -0.111
27 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.303 0.292
28 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] 0.290 -0.113
29 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] 0.288 -0.043
30 264166_at AT1G65370 [TRAF-like family protein] 0.286 -0.099
31 250778_at AT5G05500 MOP10 0.285 0.001
32 257952_at AT3G21770 [Peroxidase superfamily protein] 0.284 -0.040
33 253753_at AT4G29030 [Putative membrane lipoprotein] 0.282 0.122
34 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.281 -0.516
35 254327_at AT4G22490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.280 -0.003
36 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.278 0.108
37 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 0.278 -0.028
38 265993_at AT2G24160 [pseudogene] 0.275 0.020
39 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] 0.274 -0.121
40 266269_at AT2G29480 ATGSTU2, glutathione S-transferase tau 2, GST20, GLUTATHIONE S-TRANSFERASE 20, GSTU2, glutathione S-transferase tau 2 0.270 0.250
41 256386_at AT1G66540 [Cytochrome P450 superfamily protein] 0.270 -0.160
42 251982_at AT3G53190 [Pectin lyase-like superfamily protein] 0.269 -0.212
43 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase 0.268 0.529
44 249332_at AT5G40980 unknown 0.266 -0.173
45 251826_at AT3G55110 ABCG18, ATP-binding cassette G18 0.265 0.273
46 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] 0.263 0.050
47 248079_at AT5G55790 unknown 0.262 -0.024
48 258118_at AT3G14710 [RNI-like superfamily protein] 0.262 -0.024
49 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.257 -0.058
50 258894_at AT3G05650 AtRLP32, receptor like protein 32, RLP32, receptor like protein 32 0.255 0.068
51 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.253 0.291
52 248977_at AT5G45020 [Glutathione S-transferase family protein] 0.248 -0.102
53 261460_at AT1G07880 ATMPK13 0.248 -0.131
54 246906_at AT5G25475 [AP2/B3-like transcriptional factor family protein] 0.240 -0.032
55 266735_at AT2G46930 [Pectinacetylesterase family protein] 0.239 -0.065
56 248807_at AT5G47500 PME5, pectin methylesterase 5 0.237 -0.267
57 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.237 -0.142
58 258893_at AT3G05660 AtRLP33, receptor like protein 33, RLP33, receptor like protein 33 0.235 0.195
59 246584_at AT5G14730 unknown 0.233 0.298
60 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 0.233 -0.265
61 252916_at AT4G38950 [ATP binding microtubule motor family protein] 0.232 -0.588
62 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.231 0.259
63 259166_at AT3G01670 AtSEOR2, Arabidopsis thaliana sieve element occlusion-related 2, SEOa, sieve element occlusion a, SEOR2, sieve element occlusion-related 2 0.226 -0.220
64 250565_at AT5G08000 E13L3, glucan endo-1,3-beta-glucosidase-like protein 3, PDCB2, PLASMODESMATA CALLOSE-BINDING PROTEIN 2 0.224 -0.149
65 260991_at AT1G12160 [Flavin-binding monooxygenase family protein] 0.223 0.056
66 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.220 0.402
67 256454_at AT1G75280 [NmrA-like negative transcriptional regulator family protein] 0.220 -0.095
68 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.216 -0.043
69 257191_at AT3G13175 unknown 0.216 0.043
70 250109_at AT5G15230 GASA4, GAST1 protein homolog 4 0.215 -0.109
71 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 0.215 -0.127
72 249214_at AT5G42720 [Glycosyl hydrolase family 17 protein] 0.214 -0.396
73 263979_at AT2G42840 PDF1, protodermal factor 1 0.214 0.041
74 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.214 0.097
75 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D 0.214 -0.014
76 255236_at AT4G05520 ATEHD2, EPS15 homology domain 2, EHD2, EPS15 homology domain 2 0.213 -0.014
77 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 0.212 -0.273
78 266223_at AT2G28790 [Pathogenesis-related thaumatin superfamily protein] 0.212 0.342
79 262753_at AT1G16340 ATKDSA2, ATKSDA 0.209 -0.202
80 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.209 0.159
81 262206_at AT2G01090 [Ubiquinol-cytochrome C reductase hinge protein] 0.208 -0.020
82 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE 0.207 -0.336
83 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.206 0.048
84 263913_at AT2G36570 PXC1, PXY/TDR-correlated 1 0.206 -0.432
85 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] 0.206 0.075
86 257185_at AT3G13100 ABCC7, ATP-binding cassette C7, ATMRP7, multidrug resistance-associated protein 7, MRP7, MRP7, multidrug resistance-associated protein 7 0.204 0.060
87 253740_at AT4G28706 [pfkB-like carbohydrate kinase family protein] 0.204 -0.047
88 260144_at AT1G71960 ABCG25, ATP-binding casette G25, ATABCG25, Arabidopsis thaliana ATP-binding cassette G25 0.203 0.053
89 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] 0.201 -0.155
90 266104_at AT2G45150 CDS4, cytidinediphosphate diacylglycerol synthase 4 0.199 -0.170
91 247948_at AT5G57130 SMXL5, SMAX1-like 5 0.198 -0.181
92 260012_at AT1G67865 unknown 0.198 0.169
93 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 0.198 0.245
94 260112_at AT1G63310 unknown 0.198 -0.168
95 267627_at AT2G42270 [U5 small nuclear ribonucleoprotein helicase] 0.196 -0.099
96 253156_at AT4G35730 [Regulator of Vps4 activity in the MVB pathway protein] 0.195 -0.050
97 254001_at AT4G26260 MIOX4, myo-inositol oxygenase 4 0.193 0.180
98 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.193 0.008
99 254532_at AT4G19660 ATNPR4, NPR4, NPR1-like protein 4 0.193 -0.296
100 261879_at AT1G50520 CYP705A27, cytochrome P450, family 705, subfamily A, polypeptide 27 0.193 -0.022
101 263465_at AT2G31940 unknown 0.191 0.225
102 260181_at AT1G70710 ATGH9B1, glycosyl hydrolase 9B1, CEL1, CELLULASE 1, GH9B1, glycosyl hydrolase 9B1 0.191 -0.081
103 248810_at AT5G47280 ADR1-L3, ADR1-like 3 -0.949 -0.036
104 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.830 0.123
105 260396_at AT1G69720 HO3, heme oxygenase 3 -0.732 0.125
106 252345_at AT3G48640 unknown -0.682 0.420
107 250135_at AT5G15360 unknown -0.661 -0.011
108 255414_at AT4G03156 [small GTPase-related] -0.638 -0.028
109 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 -0.601 -0.190
110 249955_at AT5G18840 [Major facilitator superfamily protein] -0.599 -0.053
111 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.574 0.055
112 254566_at AT4G19240 unknown -0.541 0.009
113 257417_at AT1G10110 [F-box family protein] -0.533 -0.054
114 253689_at AT4G29770 unknown -0.487 -0.047
115 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] -0.474 0.002
116 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.474 0.021
117 248736_at AT5G48110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.447 0.039
118 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 -0.433 0.089
119 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 -0.413 -0.142
120 261782_at AT1G76110 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] -0.412 -0.348
121 263402_at AT2G04050 [MATE efflux family protein] -0.369 0.120
122 262421_at AT1G50290 unknown -0.367 -0.009
123 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 -0.364 -0.208
124 254350_at AT4G22280 [F-box/RNI-like superfamily protein] -0.345 -0.104
125 250936_at AT5G03120 unknown -0.341 -0.598
126 251058_at AT5G01790 unknown -0.327 -0.294
127 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 -0.319 0.210
128 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 -0.319 0.212
129 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -0.318 -0.180
130 265327_at AT2G18210 unknown -0.315 0.117
131 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.313 -0.049
132 246888_at AT5G26270 unknown -0.308 0.273
133 247250_at AT5G64630 FAS2, FASCIATA 2, MUB3.9, NFB01, NFB1 -0.305 -0.082
134 250772_at AT5G05420 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.303 -0.125
135 265680_at AT2G32150 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.301 0.381
136 254683_at AT4G13800 unknown -0.285 0.221
137 260380_at AT1G73870 BBX16, B-box domain protein 16, COL7, CONSTANS-LIKE 7 -0.285 -0.415
138 245227_s_at AT1G08410 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.283 -0.071
139 257817_at AT3G25150 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] -0.276 -0.031
140 252204_at AT3G50340 unknown -0.275 -0.013
141 261717_at AT1G18400 BEE1, BR enhanced expression 1 -0.274 -0.227
142 264773_at AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] -0.272 0.335
143 246776_at AT5G27550 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.272 -0.056
144 259661_at AT1G55265 unknown -0.271 0.044
145 253052_at AT4G37310 CYP81H1, cytochrome P450, family 81, subfamily H, polypeptide 1 -0.258 -0.044
146 262281_at AT1G68570 AtNPF3.1, NPF3.1, NRT1/ PTR family 3.1 -0.258 -0.333
147 259528_at AT1G12330 unknown -0.258 -0.534
148 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 -0.258 -0.079
149 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.255 0.128
150 250773_at AT5G05430 [RNA-binding protein] -0.251 0.031
151 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 -0.251 -0.012
152 259441_at AT1G02300 [Cysteine proteinases superfamily protein] -0.250 0.091
153 245240_at AT1G44510 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.246 -0.003
154 251746_at AT3G56060 [Glucose-methanol-choline (GMC) oxidoreductase family protein] -0.245 -0.177
155 249645_at AT5G36910 THI2.2, thionin 2.2 -0.240 -0.182
156 256976_at AT3G21020 [copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] -0.240 -0.079
157 254596_at AT4G18975 [Pentatricopeptide repeat (PPR) superfamily protein] -0.238 -0.016
158 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 -0.232 -0.032
159 256832_at AT3G22880 ARLIM15, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, ATDMC1, ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, DMC1, DISRUPTION OF MEIOTIC CONTROL 1 -0.230 -0.107
160 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 -0.229 -0.096
161 254573_at AT4G19420 [Pectinacetylesterase family protein] -0.228 0.046
162 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 -0.227 -0.070
163 246326_at AT1G16590 ATREV7, REV7 -0.225 0.003
164 247800_at AT5G58570 unknown -0.224 -0.044
165 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.221 -0.031
166 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] -0.217 0.639
167 254292_at AT4G23030 [MATE efflux family protein] -0.217 0.234
168 249928_at AT5G22250 AtCAF1b, CCR4- associated factor 1b, CAF1b, CCR4- associated factor 1b -0.217 0.669
169 253412_at AT4G33000 ATCBL10, CBL10, calcineurin B-like protein 10, SCABP8, SOS3-LIKE CALCIUM BINDING PROTEIN 8 -0.216 -0.245
170 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.215 0.090
171 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.213 -0.416
172 263741_at AT2G20620 unknown -0.212 -0.087
173 262870_at AT1G64710 [GroES-like zinc-binding dehydrogenase family protein] -0.211 0.190
174 263739_at AT2G21320 BBX18, B-box domain protein 18 -0.210 -0.305
175 266355_at AT2G01400 unknown -0.210 0.047
176 264252_at AT1G09180 ATSAR1, SECRETION-ASSOCIATED RAS 1, ATSARA1A, secretion-associated RAS super family 1, SARA1A, secretion-associated RAS super family 1 -0.208 0.380
177 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.208 -0.348
178 258719_at AT3G09540 [Pectin lyase-like superfamily protein] -0.208 -0.047
179 258802_at AT3G04650 [FAD/NAD(P)-binding oxidoreductase family protein] -0.208 0.011
180 255621_at AT4G01390 [TRAF-like family protein] -0.208 -0.005
181 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.206 0.795
182 247071_at AT5G66640 DAR3, DA1-related protein 3 -0.204 0.500
183 264433_at AT1G61810 BGLU45, beta-glucosidase 45 -0.204 0.509
184 250882_at AT5G04000 unknown -0.202 0.000
185 266824_at AT2G22800 HAT9 -0.195 -0.042
186 259683_at AT1G63050 AtLPLAT2, LPCAT2, lysophosphatidylcholine acyltransferase 2, LPLAT2, lysophospholipid acyltransferase 2 -0.192 -0.072
187 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -0.191 -0.143
188 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 -0.191 0.030
189 253215_at AT4G34950 [Major facilitator superfamily protein] -0.190 0.029
190 265428_at AT2G20720 [Pentatricopeptide repeat (PPR) superfamily protein] -0.188 -0.037
191 254145_at AT4G24700 unknown -0.188 -0.645
192 254524_at AT4G20000 [VQ motif-containing protein] -0.187 0.228
193 262780_at AT1G13090 CYP71B28, cytochrome P450, family 71, subfamily B, polypeptide 28 -0.186 -0.135
194 265454_at AT2G46530 ARF11, auxin response factor 11 -0.185 -0.288
195 249306_at AT5G41400 [RING/U-box superfamily protein] -0.184 -0.119
196 258581_at AT3G04160 unknown -0.182 -0.056
197 258283_at AT3G26750 unknown -0.180 -0.036
198 266402_at AT2G38780 unknown -0.179 -0.246
199 261240_at AT1G32940 ATSBT3.5, SBT3.5 -0.173 0.445
200 257610_at AT3G13810 AtIDD11, indeterminate(ID)-domain 11, IDD11, indeterminate(ID)-domain 11 -0.172 -0.123
201 259111_at AT3G05520 AtCPA, CPA, capping protein A -0.171 0.015
202 254221_at AT4G23820 [Pectin lyase-like superfamily protein] -0.171 -0.431
203 253945_at AT4G27050 [F-box/RNI-like superfamily protein] -0.169 -0.140