4.0:Information of module
pif5 low R/FR
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010087 phloem or xylem histogenesis BP 2.610e-04
GO:0065008 regulation of biological quality BP 7.960e-04
GO:0009725 response to hormone BP 9.369e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010411 xyloglucan metabolic process BP 2.410e-03
GO:0016126 sterol biosynthetic process BP 2.618e-03
GO:0006066 alcohol metabolic process BP 3.095e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pif5 low R/FR		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.221 -0.255
2 260012_at AT1G67865 unknown 0.179 -0.049
3 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 0.177 0.077
4 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.172 -0.001
5 263260_at AT1G10570 OTS2, OVERLY TOLERANT TO SALT 2, ULP1C, UB-LIKE PROTEASE 1C 0.155 -0.156
6 249996_at AT5G18600 [Thioredoxin superfamily protein] 0.140 -0.236
7 251507_at AT3G59080 [Eukaryotic aspartyl protease family protein] 0.139 0.085
8 247366_at AT5G63260 [Zinc finger C-x8-C-x5-C-x3-H type family protein] 0.104 -0.161
9 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.103 -0.193
10 264534_at AT1G55700 [Cysteine/Histidine-rich C1 domain family protein] 0.103 0.103
11 259579_at AT1G28010 ABCB14, ATP-binding cassette B14, ATABCB14, Arabidopsis thaliana ATP-binding cassette B14, MDR12, multi-drug resistance 12, PGP14, P-glycoprotein 14 0.101 -0.200
12 256096_at AT1G13650 unknown 0.100 0.043
13 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] 0.094 -0.101
14 251294_at AT3G61940 ATMTPA1, MTPA1 0.093 -0.072
15 264241_at AT1G54840 [HSP20-like chaperones superfamily protein] 0.093 -0.040
16 258380_at AT3G16650 PRL2, Pleiotropic regulatory locus 2 0.092 0.185
17 245128_at AT2G45380 unknown 0.092 0.043
18 257668_at AT3G20460 [Major facilitator superfamily protein] 0.086 -0.243
19 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H 0.085 -0.100
20 255750_at AT1G31960 unknown 0.085 -0.146
21 260744_at AT1G15010 unknown 0.085 -0.016
22 260004_at AT1G67860 unknown 0.085 -0.520
23 259928_at AT1G34380 [5'-3' exonuclease family protein] 0.083 0.285
24 255346_at AT4G03800 [gypsy-like retrotransposon family, has a 1.5e-125 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.083 0.229
25 263329_at AT2G15260 [RING/U-box superfamily protein] 0.080 -0.217
26 261501_at AT1G28390 [Protein kinase superfamily protein] 0.079 0.563
27 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.078 0.316
28 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -1.067 -0.012
29 263133_at AT1G78450 [SOUL heme-binding family protein] -0.249 0.035
30 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.214 -0.025
31 251245_at AT3G62090 PIF6, PHYTOCHROME-INTERACTING FACTOR 6, PIL2, phytochrome interacting factor 3-like 2 -0.208 0.152
32 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.192 0.192
33 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 -0.156 -0.019
34 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.144 -0.141
35 257502_at AT1G78110 unknown -0.134 0.167
36 264271_at AT1G60270 BGLU6, beta glucosidase 6 -0.133 0.014
37 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.125 0.081
38 260819_at AT1G06850 AtbZIP52, basic leucine-zipper 52, bZIP52, basic leucine-zipper 52 -0.117 -0.023
39 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.114 0.111
40 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.113 0.031
41 260297_at AT1G80280 [alpha/beta-Hydrolases superfamily protein] -0.112 0.237
42 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.111 -0.015
43 245384_at AT4G16790 [hydroxyproline-rich glycoprotein family protein] -0.110 0.146
44 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.109 -0.058
45 247690_at AT5G59800 ATMBD7, ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, MBD7, methyl-CPG-binding domain 7 -0.109 0.007
46 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.105 0.030
47 246888_at AT5G26270 unknown -0.102 0.099
48 266654_at AT2G25890 [Oleosin family protein] -0.101 0.073
49 259671_at AT1G52290 AtPERK15, proline-rich extensin-like receptor kinase 15, PERK15, proline-rich extensin-like receptor kinase 15 -0.100 -0.032
50 254566_at AT4G19240 unknown -0.095 -0.149
51 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.095 0.039
52 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.090 -0.034
53 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] -0.090 0.018