4.0:Information of module
3 hour 7606596
In comparison with Shoot apex inflorescence (after bolting) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 1.774e-05
GO:0009742 brassinosteroid mediated signaling pathw... BP 2.546e-03
GO:0043401 steroid hormone mediated signaling pathw... BP 2.546e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009954 proximal/distal pattern formation BP 4.047e-04
GO:0010227 floral organ abscission BP 1.192e-03
GO:0009838 abscission BP 1.300e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
3 hour 7606596		 Log2 signal ratio
Shoot apex inflorescence (after bolting)
1 262563_at AT1G34210 ATSERK2, SERK2, somatic embryogenesis receptor-like kinase 2 0.753 0.861
2 258589_at AT3G04290 ATLTL1, LTL1, Li-tolerant lipase 1 0.605 1.367
3 253142_at AT4G35520 ATMLH3, MLH3, MUTL protein homolog 3 0.562 -0.293
4 258716_at AT3G09700 [Chaperone DnaJ-domain superfamily protein] 0.560 0.817
5 258869_at AT3G03090 AtVGT1, vacuolar glucose transporter 1, VGT1, vacuolar glucose transporter 1 0.545 0.875
6 248439_at AT5G51250 [Galactose oxidase/kelch repeat superfamily protein] 0.542 -0.815
7 267013_at AT2G39180 ATCRR2, CCR2, CRINKLY4 related 2 0.527 -0.748
8 246857_at AT5G25920 unknown 0.507 -0.701
9 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 0.501 0.895
10 263383_at AT2G40120 [Protein kinase superfamily protein] 0.485 0.125
11 250786_at AT5G05540 SDN2, small RNA degrading nuclease 2 0.467 -0.090
12 262786_at AT1G10740 [alpha/beta-Hydrolases superfamily protein] 0.464 0.126
13 267212_at AT2G44060 [Late embryogenesis abundant protein, group 2] 0.448 0.781
14 257269_at AT3G17440 ATNPSN13, NPSN13, novel plant snare 13 0.444 0.250
15 266202_at AT2G02400 [NAD(P)-binding Rossmann-fold superfamily protein] 0.436 0.382
16 257265_at AT3G14980 IDM1, increased DNA methylation 1, ROS4, REPRESSOR OF SILENCING 4 0.429 -0.046
17 259861_at AT1G80620 [S15/NS1, RNA-binding protein] 0.425 0.292
18 260181_at AT1G70710 ATGH9B1, glycosyl hydrolase 9B1, CEL1, CELLULASE 1, GH9B1, glycosyl hydrolase 9B1 0.423 1.075
19 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] 0.421 -0.755
20 250414_at AT5G11180 ATGLR2.6, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, GLR2.6, glutamate receptor 2.6 0.418 -0.861
21 246295_at AT3G56690 CIP111, Cam interacting protein 111 0.418 0.950
22 265630_at AT2G27350 OTLD1, otubain-like deubiquitinase 1 0.411 0.518
23 256546_at AT3G14820 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.406 -0.850
24 264227_at AT1G67500 ATREV3, recovery protein 3, REV3, recovery protein 3 0.397 0.293
25 249409_at AT5G40340 [Tudor/PWWP/MBT superfamily protein] 0.394 0.331
26 264426_at AT1G61760 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.392 -0.431
27 262664_at AT1G13970 unknown 0.381 -0.312
28 250637_at AT5G07530 ATGRP-7, ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 7, ATGRP17, ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 17, GRP17, glycine rich protein 17 0.352 -0.371
29 247743_at AT5G59010 BSK5, brassinosteroid-signaling kinase 5 0.346 -0.197
30 246938_at AT5G25380 CYCA2;1, cyclin a2;1 0.346 -0.798
31 265472_at AT2G15580 [RING/U-box superfamily protein] 0.342 -0.444
32 267250_at AT2G23060 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.335 0.104
33 263123_at AT1G78500 PEN6, PENTACYCLIC TRITERPENE SYNTHASE 6 0.335 -0.688
34 262754_at AT1G16350 [Aldolase-type TIM barrel family protein] 0.331 0.874
35 266206_at AT2G27730 [copper ion binding] 0.330 0.664
36 266916_at AT2G45860 unknown 0.327 0.567
37 250762_at AT5G05990 [Mitochondrial glycoprotein family protein] 0.326 0.933
38 264406_at AT1G10290 ADL6, dynamin-like protein 6, DRP2A, DYNAMIN-RELATED PROTEIN 2A 0.317 0.261
39 249900_at AT5G22640 emb1211, embryo defective 1211, TIC100, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 100 0.317 1.079
40 261212_at AT1G12880 atnudt12, nudix hydrolase homolog 12, NUDT12, nudix hydrolase homolog 12 0.314 -0.149
41 252264_at AT3G49590 ATG13, autophagy-related 13 0.312 0.346
42 250365_at AT5G11410 [Protein kinase superfamily protein] 0.312 -0.606
43 253232_at AT4G34340 TAF8, TBP-associated factor 8 0.306 0.803
44 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 0.303 -0.630
45 251588_at AT3G58090 [Disease resistance-responsive (dirigent-like protein) family protein] 0.297 -0.344
46 266812_at AT2G44830 [Protein kinase superfamily protein] 0.293 0.391
47 259189_at AT3G01700 AGP11, arabinogalactan protein 11, ATAGP11, ARABINOGALACTAN PROTEIN 11 0.288 -0.312
48 248819_at AT5G47050 [SBP (S-ribonuclease binding protein) family protein] 0.288 0.164
49 248454_at AT5G51350 MOL1, MORE LATERAL GROWTH1 0.284 0.566
50 262505_at AT1G21680 [DPP6 N-terminal domain-like protein] 0.281 -0.047
51 249897_at AT5G22550 unknown 0.280 -0.849
52 247141_at AT5G65560 [Pentatricopeptide repeat (PPR) superfamily protein] 0.279 -0.014
53 263757_at AT2G21430 [Papain family cysteine protease] 0.275 0.031
54 260632_at AT1G62360 BUM, BUMBERSHOOT, BUM1, BUMBERSHOOT 1, SHL, SHOOTLESS, STM, SHOOT MERISTEMLESS, WAM, WALDMEISTER, WAM1, WALDMEISTER 1 0.266 0.686
55 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A 0.264 0.248
56 256778_at AT3G13782 NAP1;4, nucleosome assembly protein1;4, NFA04, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, NFA4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4 0.255 0.493
57 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.252 -0.475
58 263362_at AT2G03880 REME1, required for efficiency of mitochondrial editing 1 0.251 -0.517
59 255522_at AT4G02260 AT-RSH1, RELA-SPOT HOMOLOG 1, ATRSH1, RELA/SPOT HOMOLOG 1, RSH1, RELA/SPOT homolog 1 0.250 0.846
60 266576_at AT2G23940 unknown 0.248 0.162
61 262323_at AT1G64190 [6-phosphogluconate dehydrogenase family protein] 0.247 0.598
62 253089_at AT4G36290 AtMORC1, CRT1, compromised recognition of TCV 1, MORC1, Microchidia 1 0.247 0.202
63 258549_at AT3G06930 ATPRMT4B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, PRMT4B, protein arginine methyltransferase 4B 0.243 0.628
64 256912_at AT3G23850 unknown 0.243 -0.350
65 267581_at AT2G41980 [Protein with RING/U-box and TRAF-like domains] 0.241 0.088
66 252781_at AT3G42950 [Pectin lyase-like superfamily protein] 0.236 0.125
67 250610_at AT5G07550 ATGRP19, GRP19, glycine-rich protein 19 0.233 -0.434
68 257571_at AT3G16870 GATA17, GATA transcription factor 17 0.230 0.334
69 253464_at AT4G32030 unknown 0.228 0.207
70 248912_at AT5G45670 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.227 0.904
71 259435_at AT1G01450 [Protein kinase superfamily protein] 0.226 -0.831
72 266549_at AT2G35150 EXL7, EXORDIUM LIKE 7 0.220 -0.015
73 257208_at AT3G14910 unknown 0.219 0.057
74 258653_at AT3G09870 SAUR48, SMALL AUXIN UPREGULATED RNA 48 0.218 -0.468
75 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 0.217 0.242
76 266022_at AT2G05920 [Subtilase family protein] 0.216 1.155
77 261301_at AT1G48570 [zinc finger (Ran-binding) family protein] -0.644 0.717
78 260895_at AT1G29250 [Alba DNA/RNA-binding protein] -0.370 1.262
79 257679_at AT3G20470 ATGRP-5, ATGRP5, GRP-5, GLYCINE-RICH PROTEIN 5, GRP5, glycine-rich protein 5 -0.351 0.296
80 249044_at AT5G44370 PHT4;6, phosphate transporter 4;6 -0.349 0.643
81 248279_at AT5G52910 ATIM, TIMELESS -0.349 0.763
82 264028_at AT2G03680 SKU6, SPR1, SPIRAL1 -0.314 1.153
83 263691_at AT1G26880 [Ribosomal protein L34e superfamily protein] -0.278 1.670
84 254310_at AT4G22430 [F-box family protein] -0.258 -0.261
85 261799_at AT1G30473 [Heavy metal transport/detoxification superfamily protein ] -0.235 -0.511
86 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] -0.232 0.555
87 245401_at AT4G17670 unknown -0.231 0.279
88 262255_at AT1G53790 [F-box and associated interaction domains-containing protein] -0.225 -1.137
89 262169_at AT1G74860 unknown -0.220 0.237
90 250162_at AT5G15250 ATFTSH6, FTSH6, FTSH protease 6 -0.211 -0.322
91 256628_at AT3G20000 TOM40, translocase of the outer mitochondrial membrane 40 -0.202 0.435
92 261887_at AT1G80780 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.202 0.856
93 250775_at AT5G05460 AtENGase85A, ENGase85A, Endo-beta-N-acetyglucosaminidase 85A -0.200 0.034
94 255393_at AT4G03690 unknown -0.196 -0.832
95 249054_at AT5G44450 [methyltransferases] -0.187 0.442
96 261563_at AT1G01630 [Sec14p-like phosphatidylinositol transfer family protein] -0.181 0.447
97 258656_at AT3G09900 ATRAB8E, ATRABE1E, RAB GTPase homolog E1E, RABE1e, RAB GTPase homolog E1E -0.179 0.459
98 248446_at AT5G51140 [Pseudouridine synthase family protein] -0.175 0.646
99 255142_at AT4G08390 SAPX, stromal ascorbate peroxidase -0.173 0.985
100 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.172 -0.742
101 251257_at AT3G62290 ARFA1E, ADP-ribosylation factor A1E, ATARFA1E, ADP-ribosylation factor A1E -0.166 0.891
102 260489_at AT1G51610 [Cation efflux family protein] -0.165 1.044
103 249322_at AT5G40930 TOM20-4, translocase of outer membrane 20-4 -0.164 0.832
104 263661_at AT1G04290 [Thioesterase superfamily protein] -0.163 0.701
105 257159_at AT3G24400 AtPERK2, proline-rich extensin-like receptor kinase 2, PERK2, proline-rich extensin-like receptor kinase 2 -0.157 -0.344
106 246738_at AT5G27740 EMB161, EMBRYO DEFECTIVE 161, EMB251, EMBRYO DEFECTIVE 251, EMB2775, EMBRYO DEFECTIVE 2775, RFC3, replication factor C 3 -0.155 1.092
107 263186_at AT1G36110 [copia-like retrotransposon family, has a 2.2e-59 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] -0.153 -1.224
108 246584_at AT5G14730 unknown -0.150 -0.334
109 257541_at AT3G25950 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] -0.150 0.342
110 257636_at AT3G26200 CYP71B22, cytochrome P450, family 71, subfamily B, polypeptide 22 -0.147 0.396
111 249962_at AT5G18990 [Pectin lyase-like superfamily protein] -0.144 -0.212
112 264096_at AT1G78995 unknown -0.139 0.247
113 249898_at AT5G22510 A/N-InvE, alkaline/neutral invertase E, At-A/N-InvE, Arabidopsis alkaline/neutral invertase E, INV-E, alkaline/neutral invertase E -0.139 0.775
114 260992_at AT1G12150 unknown -0.139 -0.793
115 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.137 -0.444
116 251763_at AT3G55730 AtMYB109, myb domain protein 109, MYB109, myb domain protein 109 -0.133 0.155
117 267079_at AT2G41200 unknown -0.132 0.019
118 260434_at AT1G68330 unknown -0.129 -0.096
119 259911_at AT1G72680 ATCAD1, CINNAMYL ALCOHOL DEHYDROGENASE 1, CAD1, cinnamyl-alcohol dehydrogenase -0.128 0.354
120 262747_at AT1G28540 unknown -0.128 0.481
121 263081_at AT2G27220 BLH5, BEL1-like homeodomain 5 -0.127 -0.283
122 260119_at AT1G33930 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.126 -1.076
123 260242_at AT1G63650 AtEGL3, ATMYC-2, EGL1, EGL3, ENHANCER OF GLABRA 3 -0.126 0.360
124 247418_at AT5G63030 GRXC1, glutaredoxin C1 -0.125 -0.292
125 257258_at AT3G22040 unknown -0.121 -0.571
126 266913_at AT2G45890 ATROPGEF4, RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4, GEF4, guanine exchange factor 4, RHS11, ROOT HAIR SPECIFIC 11, ROPGEF4, ROP (rho of plants) guanine nucleotide exchange factor 4 -0.120 -1.032
127 249990_at AT5G18540 unknown -0.120 -0.209
128 251831_at AT3G55140 [Pectin lyase-like superfamily protein] -0.119 0.772
129 267338_at AT2G39990 AteIF3f, Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, EIF2, eukaryotic translation initiation factor 2, eIF3F, eukaryotic translation initiation factor 3 subunit F -0.114 0.406
130 259864_at AT1G72800 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.114 -0.017
131 259305_at AT3G05070 unknown -0.113 0.396
132 255162_at AT4G07840 [copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)] -0.112 -0.755
133 251608_at AT3G57860 GIG1, GIGAS CELL 1, OSD1, OMISSION OF SECOND DIVISION, UVI4-LIKE, UV-B-insensitive 4-like -0.112 0.688
134 260043_at AT1G41770 unknown -0.110 -0.398
135 260261_at AT1G68450 PDE337, PIGMENT DEFECTIVE 337 -0.109 -0.738
136 246536_at AT5G15920 EMB2782, EMBRYO DEFECTIVE 2782, SMC5, structural maintenance of chromosomes 5 -0.108 0.580
137 263772_at AT2G06255 ELF4-L3, ELF4-like 3 -0.108 0.276
138 249592_at AT5G37890 [Protein with RING/U-box and TRAF-like domains] -0.108 0.407
139 250607_at AT5G07370 ATIPK2A, INOSITOL POLYPHOSPHATE KINASE 2 ALPHA, IMPK, inositol multi-phosphate kinase, IPK2a, inositol polyphosphate kinase 2 alpha -0.107 0.185
140 253371_at AT4G33240 FAB1A, FORMS APLOID AND BINUCLEATE CELLS 1A -0.106 0.991
141 252872_at AT4G40010 SNRK2-7, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNRK2.7, SNF1-related protein kinase 2.7, SRK2F -0.106 0.437
142 255428_at AT4G03390 SRF3, STRUBBELIG-receptor family 3 -0.106 0.688
143 245832_at AT1G48850 EMB1144, embryo defective 1144 -0.105 1.359
144 267267_at AT2G02580 CYP71B9, cytochrome P450, family 71, subfamily B, polypeptide 9 -0.105 -0.018
145 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 -0.104 1.003
146 260409_at AT1G69935 SHW1, SHORT HYPOCOTYL IN WHITE LIGHT1 -0.103 1.210
147 252220_at AT3G49940 LBD38, LOB domain-containing protein 38 -0.103 0.158
148 259717_at AT1G61010 CPSF73-I, cleavage and polyadenylation specificity factor 73-I -0.103 0.547
149 265188_at AT1G23800 ALDH2B, aldehyde dehydrogenase 2B, ALDH2B7, aldehyde dehydrogenase 2B7 -0.102 0.433
150 248929_at AT5G46000 [Mannose-binding lectin superfamily protein] -0.102 -1.371
151 251093_at AT5G01360 TBL3, TRICHOME BIREFRINGENCE-LIKE 3 -0.102 -0.217