4.0:Information of module
3 hour 5929745
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 7.357e-07
GO:0019684 photosynthesis, light reaction BP 2.732e-05
GO:0015979 photosynthesis BP 5.584e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006606 protein import into nucleus BP 4.394e-03
GO:0044744 protein targeting to nucleus BP 4.394e-03
GO:1902593 single-organism nuclear import BP 4.394e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
3 hour 5929745		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A 0.307 0.080
2 265177_at AT1G23640 unknown 0.239 0.197
3 246426_at AT5G17430 BBM, BABY BOOM 0.222 -0.131
4 245012_at ATCG00440 NDHC 0.220 0.085
5 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] 0.212 0.078
6 266691_at AT2G19890 unknown 0.203 0.040
7 246391_at AT1G77350 unknown 0.197 0.029
8 252070_at AT3G51680 AtSDR2, SDR2, short-chain dehydrogenase/reductase 2 0.192 -0.025
9 262142_at AT1G52640 [Pentatricopeptide repeat (PPR) superfamily protein] 0.186 0.483
10 244996_at ATCG00160 RPS2, ribosomal protein S2 0.183 0.073
11 259861_at AT1G80620 [S15/NS1, RNA-binding protein] 0.182 0.002
12 244921_s_at ATMG01000 ORF114 0.169 -0.150
13 247703_at AT5G59560 SRR1, SENSITIVITY TO RED LIGHT REDUCED 1 0.166 0.022
14 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] 0.163 0.318
15 250289_at AT5G13190 AtGILP, GILP, GSH-induced LITAF domain protein 0.159 0.294
16 252280_at AT3G49260 iqd21, IQ-domain 21 0.158 0.207
17 264406_at AT1G10290 ADL6, dynamin-like protein 6, DRP2A, DYNAMIN-RELATED PROTEIN 2A 0.157 0.279
18 250110_at AT5G15350 AtENODL17, ENODL17, early nodulin-like protein 17 0.150 0.104
19 245019_at ATCG00530 YCF10 0.148 0.282
20 255124_at AT4G08560 APUM15, pumilio 15, PUM15, pumilio 15 0.143 -0.054
21 246901_at AT5G25630 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.142 -0.142
22 256161_at AT1G30090 [Galactose oxidase/kelch repeat superfamily protein] 0.142 -0.253
23 252264_at AT3G49590 ATG13, autophagy-related 13 0.140 -0.171
24 259848_at AT1G72180 [Leucine-rich receptor-like protein kinase family protein] 0.136 -0.130
25 266032_x_at AT2G05890 unknown 0.136 0.205
26 249581_at AT5G37600 ATGLN1;1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, ATGSR1, ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, GLN1;1, GLUTAMINE SYNTHASE 1;1, GSR 1, glutamine synthase clone R1 0.135 -0.457
27 254671_at AT4G18410 [Mutator-like transposase family, has a 8.7e-30 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.127 0.142
28 261935_at AT1G22610 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.127 0.012
29 245004_at ATCG00300 YCF9 0.126 0.081
30 251086_at AT5G01450 APD2, ABERRANT POLLEN DEVELOPMENT 2 0.124 -0.016
31 250091_at AT5G17340 [Putative membrane lipoprotein] 0.122 0.036
32 246240_at AT4G37130 TCU1, TRANSCURVATA 1 0.121 0.118
33 266549_at AT2G35150 EXL7, EXORDIUM LIKE 7 0.118 0.101
34 253967_at AT4G26550 [Got1/Sft2-like vescicle transport protein family] 0.117 -0.226
35 249094_at AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 0.117 0.185
36 251659_at AT3G57090 BIGYIN, FIS1A, FISSION 1A 0.116 0.172
37 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B 0.113 -0.050
38 262973_at AT1G75600 [Histone superfamily protein] 0.112 -0.047
39 254405_at AT4G21350 B80, PUB8, plant U-box 8 0.111 -0.165
40 258185_at AT3G21580 ABCI12, ATP-binding cassette I12 0.111 -0.114
41 246007_at AT5G08410 FTRA2, ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 0.111 -0.030
42 267581_at AT2G41980 [Protein with RING/U-box and TRAF-like domains] 0.111 0.073
43 261953_at AT1G64440 REB1, ROOT EPIDERMAL BULGER1, RHD1, ROOT HAIR DEFECTIVE 1, UGE4, UDP-GLUCOSE 4-EPIMERASE 0.110 0.177
44 250839_at AT5G04640 AGL99, AGAMOUS-like 99 0.109 -0.035
45 260763_at AT1G49220 [RING/U-box superfamily protein] 0.108 -0.120
46 264444_at AT1G27360 SPL11, squamosa promoter-like 11 0.108 0.030
47 265286_at AT2G20360 [NAD(P)-binding Rossmann-fold superfamily protein] 0.107 0.366
48 261064_at AT1G07510 ftsh10, FTSH protease 10 0.106 -0.003
49 245020_at ATCG00540 PETA, photosynthetic electron transfer A 0.105 0.112
50 266665_at AT2G29790 [Maternally expressed gene (MEG) family protein] 0.105 -0.044
51 247438_at AT5G62460 [RING/FYVE/PHD zinc finger superfamily protein] 0.104 0.008
52 245008_at ATCG00360 YCF3 0.102 0.143
53 262377_at AT1G73110 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.384 0.004
54 257679_at AT3G20470 ATGRP-5, ATGRP5, GRP-5, GLYCINE-RICH PROTEIN 5, GRP5, glycine-rich protein 5 -0.280 0.136
55 264028_at AT2G03680 SKU6, SPR1, SPIRAL1 -0.252 0.020
56 249837_at AT5G23480 [SWIB/MDM2 domain] -0.233 0.199
57 266091_at AT2G37920 emb1513, embryo defective 1513 -0.215 0.136
58 249322_at AT5G40930 TOM20-4, translocase of outer membrane 20-4 -0.199 -0.091
59 249472_at AT5G39210 CRR7, CHLORORESPIRATORY REDUCTION 7 -0.185 0.159
60 257120_at AT3G20200 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.169 -0.022
61 264075_at AT2G10850 unknown -0.168 0.127
62 247030_at AT5G67210 IRX15-L, IRX15-LIKE -0.149 -0.412
63 249145_at AT5G43280 ATDCI1, delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1, DCI1, delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1, DCI1, DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1 -0.149 -0.022
64 261563_at AT1G01630 [Sec14p-like phosphatidylinositol transfer family protein] -0.145 0.104
65 264096_at AT1G78995 unknown -0.140 -0.030
66 249990_at AT5G18540 unknown -0.139 0.140
67 246738_at AT5G27740 EMB161, EMBRYO DEFECTIVE 161, EMB251, EMBRYO DEFECTIVE 251, EMB2775, EMBRYO DEFECTIVE 2775, RFC3, replication factor C 3 -0.138 -0.020
68 248279_at AT5G52910 ATIM, TIMELESS -0.138 0.017
69 251669_at AT3G57180 BPG2, BRASSINAZOLE(BRZ) INSENSITIVE PALE GREEN 2 -0.137 0.203
70 251763_at AT3G55730 AtMYB109, myb domain protein 109, MYB109, myb domain protein 109 -0.135 0.082
71 250775_at AT5G05460 AtENGase85A, ENGase85A, Endo-beta-N-acetyglucosaminidase 85A -0.135 0.043
72 250560_at AT5G08020 ATRPA70B, ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70B, RPA70-kDa subunit B -0.133 0.099
73 244908_at ATMG00720 ORF107D -0.133 0.008
74 250981_at AT5G03140 LecRK-VIII.2, L-type lectin receptor kinase VIII.2 -0.132 -0.038
75 266926_at AT2G46000 unknown -0.132 0.081
76 246305_at AT3G51890 CLC3, clathrin light chain 3 -0.132 -0.208
77 263754_at AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] -0.127 -0.013
78 254410_at AT4G21410 CRK29, cysteine-rich RLK (RECEPTOR-like protein kinase) 29 -0.127 -0.089
79 260573_at AT2G47280 [Pectin lyase-like superfamily protein] -0.127 -0.208
80 252532_at AT3G46570 [Glycosyl hydrolase superfamily protein] -0.126 -0.127
81 253858_at AT4G27600 NARA5, GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5 -0.126 -0.026
82 251279_at AT3G61800 unknown -0.125 0.084
83 252360_at AT3G48480 [Cysteine proteinases superfamily protein] -0.124 0.040
84 255513_at AT4G02060 MCM7, PRL, PROLIFERA -0.124 -0.010
85 248867_at AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -0.123 0.121
86 260344_at AT1G69240 ATMES15, ARABIDOPSIS THALIANA METHYL ESTERASE 15, MES15, methyl esterase 15, RHS9, ROOT HAIR SPECIFIC 9 -0.121 -0.031
87 245310_at AT4G13950 RALFL31, ralf-like 31 -0.118 -0.169
88 265849_at AT2G35736 unknown -0.117 0.131
89 267338_at AT2G39990 AteIF3f, Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, EIF2, eukaryotic translation initiation factor 2, eIF3F, eukaryotic translation initiation factor 3 subunit F -0.116 -0.158
90 266151_x_at AT2G12300 [CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.114 0.005
91 264087_at AT2G31340 emb1381, embryo defective 1381 -0.114 -0.121
92 263020_at AT1G23880 [NHL domain-containing protein] -0.114 0.006
93 246800_at AT5G26780 SHM2, serine hydroxymethyltransferase 2 -0.111 0.083
94 259399_at AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 -0.109 -0.058
95 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -0.109 0.078
96 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.109 -0.505
97 266744_at AT2G02970 APY6, apyrase 6, AtAPY6 -0.106 0.043
98 246770_at AT5G27460 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.106 -0.004
99 264084_at AT2G31240 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.106 0.074
100 246788_at AT5G27580 AGL89, AGAMOUS-like 89 -0.103 -0.045
101 251202_at AT3G63040 unknown -0.103 -0.012
102 253021_at AT4G38050 [Xanthine/uracil permease family protein] -0.102 0.133
103 260539_at AT2G43480 [Peroxidase superfamily protein] -0.102 0.069
104 258128_at AT3G24590 PLSP1, plastidic type i signal peptidase 1 -0.101 -0.088