4.0:Information of module
Sucrose 90 mM 6h in dark
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0046173 polyol biosynthetic process BP 8.731e-03
GO:0019637 organophosphate metabolic process BP 9.427e-03
GO:0006793 phosphorus metabolic process BP 9.852e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0032269 negative regulation of cellular protein ... BP 2.819e-04
GO:0051248 negative regulation of protein metabolic... BP 2.819e-04
GO:0044092 negative regulation of molecular functio... BP 5.589e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Sucrose 90 mM 6h in dark		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 264890_at AT1G23180 [ARM repeat superfamily protein] 1.454 -0.001
2 247807_at AT5G58360 ATOFP3, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, OFP3, ovate family protein 3 1.405 -1.170
3 247808_at AT5G58190 ECT10, evolutionarily conserved C-terminal region 10 1.244 0.062
4 245659_at AT1G28260 [Telomerase activating protein Est1] 1.093 0.413
5 255805_at AT4G10240 bbx23, B-box domain protein 23 0.935 -0.706
6 266638_at AT2G35490 [Plastid-lipid associated protein PAP / fibrillin family protein] 0.849 0.701
7 253007_at AT4G38090 [Ribosomal protein S5 domain 2-like superfamily protein] 0.665 0.044
8 251582_at AT3G58580 [DNAse I-like superfamily protein] 0.553 -0.162
9 258736_at AT3G05900 [neurofilament protein-related] 0.536 0.596
10 254297_at AT4G23110 [insulin-like growth factor binding] 0.499 -1.280
11 246930_at AT5G25220 KNAT3, KNOTTED1-like homeobox gene 3 0.495 0.012
12 264807_at AT1G08700 PS1, Presenilin-1 0.488 0.238
13 259785_at AT1G29490 SAUR68, SMALL AUXIN UPREGULATED 68 0.449 -1.371
14 255620_at AT4G01380 [plastocyanin-like domain-containing protein] 0.449 -0.460
15 267227_at AT2G44030 [Galactose oxidase/kelch repeat superfamily protein] 0.442 0.110
16 254159_at AT4G24240 ATWRKY7, WRKY7, WRKY DNA-binding protein 7 0.435 0.246
17 248004_at AT5G56230 PRA1.G2, prenylated RAB acceptor 1.G2 0.430 -0.086
18 259245_at AT3G07660 unknown 0.420 0.475
19 255779_at AT1G18650 PDCB3, plasmodesmata callose-binding protein 3 0.417 0.157
20 253987_at AT4G26270 PFK3, phosphofructokinase 3 0.416 0.324
21 264632_at AT1G65640 DEG4, degradation of periplasmic proteins 4, DegP4, DegP protease 4 0.382 -1.241
22 257998_at AT3G27510 [Cysteine/Histidine-rich C1 domain family protein] 0.379 -0.685
23 264847_at AT2G17380 AP19, associated protein 19 0.378 0.510
24 249097_at AT5G43520 [Cysteine/Histidine-rich C1 domain family protein] 0.374 -0.906
25 260298_at AT1G80320 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.361 -0.397
26 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 0.359 -1.074
27 264188_at AT1G54690 G-H2AX, GAMMA H2AX, GAMMA-H2AX, gamma histone variant H2AX, H2AXB, HTA3, histone H2A 3 0.351 0.326
28 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.339 -0.317
29 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] 0.338 -0.681
30 260442_at AT1G68220 unknown 0.332 0.107
31 254463_at AT4G20280 TAF11, TBP-associated factor 11 0.332 0.246
32 261795_at AT1G16010 AtMGT2, AtMRS2-1, MGT2, magnesium transporter 2, MRS2-1 0.328 0.156
33 251821_at AT3G55050 [Protein phosphatase 2C family protein] 0.321 -0.313
34 262527_at AT1G17010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.316 -0.839
35 263025_at AT1G23990 [non-LTR retrotransposon family (LINE), has a 2.0e-30 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)] 0.315 -0.998
36 256514_at AT1G66130 [NAD(P)-binding Rossmann-fold superfamily protein] 0.313 0.392
37 250441_at AT5G10540 TOP2, thimet metalloendopeptidase 2 0.310 0.497
38 249314_at AT5G41180 [leucine-rich repeat transmembrane protein kinase family protein] 0.308 0.116
39 266423_at AT2G41340 RPB5D, RNA polymerase II fifth largest subunit, D 0.303 0.110
40 265319_at AT2G22670 IAA8, indoleacetic acid-induced protein 8 0.301 0.568
41 261585_at AT1G01010 ANAC001, NAC domain containing protein 1, NAC001, NAC domain containing protein 1 0.301 -0.186
42 262531_at AT1G17230 [Leucine-rich receptor-like protein kinase family protein] 0.301 -0.531
43 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.299 0.193
44 264416_at AT1G43140 [Cullin family protein] 0.296 -1.086
45 245166_at AT2G33170 [Leucine-rich repeat receptor-like protein kinase family protein] 0.292 -0.814
46 249652_at AT5G37070 unknown 0.292 0.086
47 246300_at AT3G51830 ATG5, SAC8, SAC domain-containing protein 8 0.291 0.099
48 260715_at AT1G48200 unknown 0.289 0.073
49 256985_at AT3G13540 ATMYB5, myb domain protein 5, MYB5, myb domain protein 5 0.288 -0.999
50 259730_at AT1G77660 [Histone H3 K4-specific methyltransferase SET7/9 family protein] 0.287 -0.368
51 263392_at AT2G10490 [CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-43 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.281 -1.257
52 259749_at AT1G71100 RSW10, RADIAL SWELLING 10 0.279 0.312
53 253906_at AT4G27220 [NB-ARC domain-containing disease resistance protein] 0.276 -0.965
54 251578_at AT3G58180 [ARM repeat superfamily protein] -1.576 0.805
55 262480_at AT1G11340 [S-locus lectin protein kinase family protein] -1.142 -0.786
56 250127_at AT5G16380 unknown -1.122 -0.276
57 263574_at AT2G16990 [Major facilitator superfamily protein] -1.086 -0.927
58 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase -1.031 -0.814
59 257853_at AT3G12960 SMP1, seed maturation protein 1 -0.954 -0.467
60 263044_at AT1G23360 MENG -0.875 0.230
61 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 -0.832 -0.586
62 261076_at AT1G07420 ATSMO1, Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, SMO2-1, sterol 4-alpha-methyl-oxidase 2-1 -0.815 0.980
63 261183_at AT1G34550 EMB2756, EMBRYO DEFECTIVE 2756 -0.810 0.151
64 267608_at AT2G26770 SCAB1, stomatal closure-related actin binding protein 1 -0.781 -0.221
65 251340_at AT3G60830 ARP7, ARP7, actin-related protein 7, ATARP7, actin-related protein 7 -0.746 0.939
66 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 -0.744 1.374
67 245525_at AT4G15930 [Dynein light chain type 1 family protein] -0.739 1.258
68 260173_at AT1G71930 ANAC030, Arabidopsis NAC domain containing protein 30, VND7, vascular related NAC-domain protein 7 -0.733 0.064
69 261153_at AT1G04850 [ubiquitin-associated (UBA)/TS-N domain-containing protein] -0.702 0.559
70 247611_at AT5G60710 [Zinc finger (C3HC4-type RING finger) family protein] -0.699 0.155
71 248849_at AT5G46540 ABCB7, ATP-binding cassette B7, PGP7, P-glycoprotein 7 -0.692 -0.638
72 246160_at AT5G21040 FBX2, F-box protein 2 -0.686 -0.435
73 256020_at AT1G58290 AtHEMA1, Arabidopsis thaliana hemA 1, HEMA1 -0.655 0.217
74 263675_x_at AT2G04770 [CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.645 -0.406
75 258899_at AT3G05675 [BTB/POZ domain-containing protein] -0.631 -0.681
76 256397_at AT3G06110 ATMKP2, ARABIDOPSIS MAPK PHOSPHATASE 2, DSPTP1B, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, MKP2, MAPK phosphatase 2 -0.629 0.109
77 247627_at AT5G60360 AALP, aleurain-like protease, ALP, aleurain-like protease, SAG2, SENESCENCE ASSOCIATED GENE2 -0.601 0.463
78 262442_at AT1G47420 SDH5, succinate dehydrogenase 5 -0.568 0.946
79 264501_at AT1G09390 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.566 0.922
80 253352_at AT4G33710 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.564 -0.834
81 263147_at AT1G53980 [Ubiquitin-like superfamily protein] -0.522 -0.907
82 245943_at AT5G19500 [Tryptophan/tyrosine permease] -0.515 -0.461
83 260683_at AT1G17560 HLL, HUELLENLOS -0.513 -0.202
84 264869_at AT1G24350 [Acid phosphatase/vanadium-dependent haloperoxidase-related protein] -0.512 0.245
85 252786_at AT3G42670 CHR38, chromatin remodeling 38, CLSY, CLASSY1, CLSY1, CLASSY 1 -0.511 -0.048
86 267557_at AT2G32710 ACK2, CYCLIN-DEPENDENT KINASE INHIBITOR 2, ICK7, INTERACTORS OF CDC2 KINASE 7, KRP4, KRP4, KIP-RELATED PROTEIN 4 -0.504 -0.400
87 260222_at AT1G74380 XXT5, xyloglucan xylosyltransferase 5 -0.497 0.695
88 265573_at AT2G28200 [C2H2-type zinc finger family protein] -0.490 0.244
89 253437_at AT4G32460 unknown -0.486 1.057
90 265344_at AT2G22660 unknown -0.484 0.301
91 260619_at AT1G08110 [lactoylglutathione lyase family protein / glyoxalase I family protein] -0.479 1.158
92 258397_at AT3G15357 unknown -0.473 0.494
93 258364_at AT3G14225 GLIP4, GDSL-motif lipase 4 -0.465 -0.497
94 265389_at AT2G20690 [lumazine-binding family protein] -0.463 0.583
95 258708_at AT3G09580 [FAD/NAD(P)-binding oxidoreductase family protein] -0.460 0.661
96 251437_at AT3G59910 [Ankyrin repeat family protein] -0.450 0.588
97 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] -0.441 -0.364
98 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.441 -0.459
99 266526_at AT2G16980 [Major facilitator superfamily protein] -0.438 -0.837
100 260369_at AT1G69620 RPL34, ribosomal protein L34 -0.437 0.974
101 265055_at AT1G52020 [pseudogene] -0.416 -1.465
102 254925_at AT4G11380 [Adaptin family protein] -0.414 0.920
103 247763_at AT5G59180 NRPB7 -0.412 0.975
104 255887_at AT1G20370 [Pseudouridine synthase family protein] -0.411 0.575
105 262588_at AT1G15130 [Endosomal targeting BRO1-like domain-containing protein] -0.406 0.361