4.0:Information of module
Sucrose 90 mM 6h in dark
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0046173 polyol biosynthetic process BP 8.731e-03
GO:0019637 organophosphate metabolic process BP 9.427e-03
GO:0006793 phosphorus metabolic process BP 9.852e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0032269 negative regulation of cellular protein ... BP 2.819e-04
GO:0051248 negative regulation of protein metabolic... BP 2.819e-04
GO:0044092 negative regulation of molecular functio... BP 5.589e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Sucrose 90 mM 6h in dark		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 264890_at AT1G23180 [ARM repeat superfamily protein] 1.454 0.024
2 247807_at AT5G58360 ATOFP3, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, OFP3, ovate family protein 3 1.405 0.011
3 247808_at AT5G58190 ECT10, evolutionarily conserved C-terminal region 10 1.244 -0.187
4 245659_at AT1G28260 [Telomerase activating protein Est1] 1.093 -0.113
5 255805_at AT4G10240 bbx23, B-box domain protein 23 0.935 0.043
6 266638_at AT2G35490 [Plastid-lipid associated protein PAP / fibrillin family protein] 0.849 -0.377
7 253007_at AT4G38090 [Ribosomal protein S5 domain 2-like superfamily protein] 0.665 -0.034
8 251582_at AT3G58580 [DNAse I-like superfamily protein] 0.553 0.041
9 258736_at AT3G05900 [neurofilament protein-related] 0.536 0.437
10 254297_at AT4G23110 [insulin-like growth factor binding] 0.499 0.021
11 246930_at AT5G25220 KNAT3, KNOTTED1-like homeobox gene 3 0.495 0.049
12 264807_at AT1G08700 PS1, Presenilin-1 0.488 -0.063
13 259785_at AT1G29490 SAUR68, SMALL AUXIN UPREGULATED 68 0.449 -0.231
14 255620_at AT4G01380 [plastocyanin-like domain-containing protein] 0.449 0.115
15 267227_at AT2G44030 [Galactose oxidase/kelch repeat superfamily protein] 0.442 0.048
16 254159_at AT4G24240 ATWRKY7, WRKY7, WRKY DNA-binding protein 7 0.435 -0.333
17 248004_at AT5G56230 PRA1.G2, prenylated RAB acceptor 1.G2 0.430 0.074
18 259245_at AT3G07660 unknown 0.420 0.031
19 255779_at AT1G18650 PDCB3, plasmodesmata callose-binding protein 3 0.417 0.155
20 253987_at AT4G26270 PFK3, phosphofructokinase 3 0.416 -0.073
21 264632_at AT1G65640 DEG4, degradation of periplasmic proteins 4, DegP4, DegP protease 4 0.382 -0.168
22 257998_at AT3G27510 [Cysteine/Histidine-rich C1 domain family protein] 0.379 0.027
23 264847_at AT2G17380 AP19, associated protein 19 0.378 -0.132
24 249097_at AT5G43520 [Cysteine/Histidine-rich C1 domain family protein] 0.374 0.089
25 260298_at AT1G80320 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.361 -0.052
26 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 0.359 0.068
27 264188_at AT1G54690 G-H2AX, GAMMA H2AX, GAMMA-H2AX, gamma histone variant H2AX, H2AXB, HTA3, histone H2A 3 0.351 -0.202
28 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.339 -0.111
29 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] 0.338 0.026
30 260442_at AT1G68220 unknown 0.332 0.065
31 254463_at AT4G20280 TAF11, TBP-associated factor 11 0.332 0.062
32 261795_at AT1G16010 AtMGT2, AtMRS2-1, MGT2, magnesium transporter 2, MRS2-1 0.328 0.073
33 251821_at AT3G55050 [Protein phosphatase 2C family protein] 0.321 0.001
34 262527_at AT1G17010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.316 -0.011
35 263025_at AT1G23990 [non-LTR retrotransposon family (LINE), has a 2.0e-30 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)] 0.315 -0.025
36 256514_at AT1G66130 [NAD(P)-binding Rossmann-fold superfamily protein] 0.313 -0.017
37 250441_at AT5G10540 TOP2, thimet metalloendopeptidase 2 0.310 -0.037
38 249314_at AT5G41180 [leucine-rich repeat transmembrane protein kinase family protein] 0.308 0.159
39 266423_at AT2G41340 RPB5D, RNA polymerase II fifth largest subunit, D 0.303 0.140
40 265319_at AT2G22670 IAA8, indoleacetic acid-induced protein 8 0.301 0.184
41 261585_at AT1G01010 ANAC001, NAC domain containing protein 1, NAC001, NAC domain containing protein 1 0.301 -0.091
42 262531_at AT1G17230 [Leucine-rich receptor-like protein kinase family protein] 0.301 -0.160
43 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.299 -0.140
44 264416_at AT1G43140 [Cullin family protein] 0.296 0.066
45 245166_at AT2G33170 [Leucine-rich repeat receptor-like protein kinase family protein] 0.292 -0.014
46 249652_at AT5G37070 unknown 0.292 0.057
47 246300_at AT3G51830 ATG5, SAC8, SAC domain-containing protein 8 0.291 -0.372
48 260715_at AT1G48200 unknown 0.289 0.078
49 256985_at AT3G13540 ATMYB5, myb domain protein 5, MYB5, myb domain protein 5 0.288 0.139
50 259730_at AT1G77660 [Histone H3 K4-specific methyltransferase SET7/9 family protein] 0.287 0.004
51 263392_at AT2G10490 [CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-43 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.281 -0.109
52 259749_at AT1G71100 RSW10, RADIAL SWELLING 10 0.279 0.122
53 253906_at AT4G27220 [NB-ARC domain-containing disease resistance protein] 0.276 -0.178
54 251578_at AT3G58180 [ARM repeat superfamily protein] -1.576 -0.186
55 262480_at AT1G11340 [S-locus lectin protein kinase family protein] -1.142 -0.433
56 250127_at AT5G16380 unknown -1.122 -0.064
57 263574_at AT2G16990 [Major facilitator superfamily protein] -1.086 0.168
58 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase -1.031 0.041
59 257853_at AT3G12960 SMP1, seed maturation protein 1 -0.954 -0.071
60 263044_at AT1G23360 MENG -0.875 0.081
61 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 -0.832 -0.182
62 261076_at AT1G07420 ATSMO1, Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, SMO2-1, sterol 4-alpha-methyl-oxidase 2-1 -0.815 0.410
63 261183_at AT1G34550 EMB2756, EMBRYO DEFECTIVE 2756 -0.810 -0.267
64 267608_at AT2G26770 SCAB1, stomatal closure-related actin binding protein 1 -0.781 -0.053
65 251340_at AT3G60830 ARP7, ARP7, actin-related protein 7, ATARP7, actin-related protein 7 -0.746 -0.049
66 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 -0.744 0.112
67 245525_at AT4G15930 [Dynein light chain type 1 family protein] -0.739 -0.146
68 260173_at AT1G71930 ANAC030, Arabidopsis NAC domain containing protein 30, VND7, vascular related NAC-domain protein 7 -0.733 0.164
69 261153_at AT1G04850 [ubiquitin-associated (UBA)/TS-N domain-containing protein] -0.702 0.210
70 247611_at AT5G60710 [Zinc finger (C3HC4-type RING finger) family protein] -0.699 -0.039
71 248849_at AT5G46540 ABCB7, ATP-binding cassette B7, PGP7, P-glycoprotein 7 -0.692 0.296
72 246160_at AT5G21040 FBX2, F-box protein 2 -0.686 0.052
73 256020_at AT1G58290 AtHEMA1, Arabidopsis thaliana hemA 1, HEMA1 -0.655 0.038
74 263675_x_at AT2G04770 [CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.645 -0.009
75 258899_at AT3G05675 [BTB/POZ domain-containing protein] -0.631 0.112
76 256397_at AT3G06110 ATMKP2, ARABIDOPSIS MAPK PHOSPHATASE 2, DSPTP1B, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, MKP2, MAPK phosphatase 2 -0.629 -0.035
77 247627_at AT5G60360 AALP, aleurain-like protease, ALP, aleurain-like protease, SAG2, SENESCENCE ASSOCIATED GENE2 -0.601 0.096
78 262442_at AT1G47420 SDH5, succinate dehydrogenase 5 -0.568 0.060
79 264501_at AT1G09390 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.566 0.210
80 253352_at AT4G33710 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.564 0.198
81 263147_at AT1G53980 [Ubiquitin-like superfamily protein] -0.522 -0.115
82 245943_at AT5G19500 [Tryptophan/tyrosine permease] -0.515 -0.086
83 260683_at AT1G17560 HLL, HUELLENLOS -0.513 0.016
84 264869_at AT1G24350 [Acid phosphatase/vanadium-dependent haloperoxidase-related protein] -0.512 -0.027
85 252786_at AT3G42670 CHR38, chromatin remodeling 38, CLSY, CLASSY1, CLSY1, CLASSY 1 -0.511 -0.109
86 267557_at AT2G32710 ACK2, CYCLIN-DEPENDENT KINASE INHIBITOR 2, ICK7, INTERACTORS OF CDC2 KINASE 7, KRP4, KRP4, KIP-RELATED PROTEIN 4 -0.504 -0.060
87 260222_at AT1G74380 XXT5, xyloglucan xylosyltransferase 5 -0.497 0.185
88 265573_at AT2G28200 [C2H2-type zinc finger family protein] -0.490 -0.009
89 253437_at AT4G32460 unknown -0.486 -0.028
90 265344_at AT2G22660 unknown -0.484 -0.109
91 260619_at AT1G08110 [lactoylglutathione lyase family protein / glyoxalase I family protein] -0.479 0.032
92 258397_at AT3G15357 unknown -0.473 -0.006
93 258364_at AT3G14225 GLIP4, GDSL-motif lipase 4 -0.465 0.082
94 265389_at AT2G20690 [lumazine-binding family protein] -0.463 -0.358
95 258708_at AT3G09580 [FAD/NAD(P)-binding oxidoreductase family protein] -0.460 -0.092
96 251437_at AT3G59910 [Ankyrin repeat family protein] -0.450 -0.067
97 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] -0.441 0.143
98 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.441 -0.005
99 266526_at AT2G16980 [Major facilitator superfamily protein] -0.438 0.254
100 260369_at AT1G69620 RPL34, ribosomal protein L34 -0.437 0.398
101 265055_at AT1G52020 [pseudogene] -0.416 0.140
102 254925_at AT4G11380 [Adaptin family protein] -0.414 0.478
103 247763_at AT5G59180 NRPB7 -0.412 0.129
104 255887_at AT1G20370 [Pseudouridine synthase family protein] -0.411 0.027
105 262588_at AT1G15130 [Endosomal targeting BRO1-like domain-containing protein] -0.406 0.159