4.0:Information of module
rcf1-1 cold 0h
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009723 response to ethylene BP 3.764e-07
GO:0014070 response to organic cyclic compound BP 2.187e-06
GO:0006605 protein targeting BP 3.594e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 9.465e-18
GO:0019684 photosynthesis, light reaction BP 1.909e-14
GO:0009657 plastid organization BP 5.237e-14
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rcf1-1 cold 0h		 Log2 signal ratio
Leafminer damaged seedlings
1 253301_at AT4G33720 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.989 0.049
2 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.610 -0.055
3 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.499 0.598
4 257421_at AT1G12030 unknown 0.424 -0.375
5 261606_at AT1G49570 [Peroxidase superfamily protein] 0.400 -0.051
6 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.327 0.251
7 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 0.323 0.384
8 259411_at AT1G13410 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.297 0.043
9 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.281 0.856
10 267048_at AT2G34200 [RING/FYVE/PHD zinc finger superfamily protein] 0.264 0.137
11 258792_at AT3G04640 [glycine-rich protein] 0.250 0.826
12 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 0.246 1.038
13 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.239 -0.117
14 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] 0.234 -0.264
15 249427_at AT5G39850 [Ribosomal protein S4] 0.233 -0.004
16 245188_at AT1G67660 [Restriction endonuclease, type II-like superfamily protein] 0.226 0.108
17 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.217 1.015
18 265452_at AT2G46510 AIB, ABA-inducible BHLH-type transcription factor, ATAIB, ABA-inducible BHLH-type transcription factor, JAM1, JA-associated MYC2-like 1 0.214 0.382
19 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.213 -0.376
20 248060_at AT5G55560 [Protein kinase superfamily protein] 0.207 0.387
21 246282_at AT4G36580 [AAA-type ATPase family protein] 0.207 -0.090
22 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.204 -0.148
23 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.204 1.304
24 260359_at AT1G69210 [Uncharacterised protein family UPF0090] 0.200 -0.043
25 248709_at AT5G48470 PRDA1, PEP-Related Development Arrested 1 0.199 -0.082
26 255753_at AT1G18570 AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 0.197 0.361
27 261216_at AT1G33030 [O-methyltransferase family protein] 0.194 0.711
28 256027_at AT1G34160 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.194 0.022
29 248605_at AT5G49410 unknown 0.191 -0.046
30 253027_at AT4G38150 [Pentatricopeptide repeat (PPR) superfamily protein] 0.189 -0.033
31 248307_at AT5G52850 [Pentatricopeptide repeat (PPR) superfamily protein] 0.187 -0.075
32 246584_at AT5G14730 unknown 0.186 0.298
33 253414_at AT4G33050 AtIQM1, EDA39, embryo sac development arrest 39, IQM1, IQ-motif protein 1 0.186 0.240
34 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 0.184 0.889
35 265905_at AT2G25640 [SPOC domain / Transcription elongation factor S-II protein] 0.183 -0.094
36 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a 0.182 0.486
37 259285_at AT3G11460 MEF10, mitochondrial RNA editing factor 10 0.179 -0.035
38 249670_at AT5G35890 [Beta-galactosidase related protein] 0.177 0.028
39 264806_at AT1G08610 [Pentatricopeptide repeat (PPR) superfamily protein] 0.176 -0.170
40 262641_at AT1G62730 [Terpenoid synthases superfamily protein] 0.173 0.097
41 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 0.170 0.731
42 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 0.170 0.747
43 258316_at AT3G22660 [rRNA processing protein-related] 0.163 0.064
44 260316_at AT1G63810 unknown 0.155 -0.136
45 248904_at AT5G46295 unknown 0.153 -0.011
46 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 0.145 -0.115
47 246929_at AT5G25210 unknown 0.144 0.213
48 250875_at AT5G04020 [calmodulin binding] 0.144 0.396
49 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 0.143 0.397
50 262171_at AT1G74950 JAZ2, JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY10B 0.142 0.460
51 261337_at AT1G44810 [DNA-binding storekeeper protein-related transcriptional regulator] 0.141 -0.064
52 247575_at AT5G61030 GR-RBP3, glycine-rich RNA-binding protein 3 0.140 0.000
53 253456_at AT4G32050 [neurochondrin family protein] 0.138 -0.127
54 247540_at AT5G61590 [Integrase-type DNA-binding superfamily protein] 0.137 -0.080
55 259479_at AT1G19020 unknown 0.135 0.643
56 254361_at AT4G22212 [Arabidopsis defensin-like protein] 0.135 0.007
57 245164_at AT2G33210 HSP60-2, heat shock protein 60-2 0.133 -0.029
58 253803_at AT4G28200 unknown 0.133 -0.030
59 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 0.130 0.018
60 258571_at AT3G04420 anac048, NAC domain containing protein 48, NAC048, NAC domain containing protein 48 0.130 -0.045
61 259672_at AT1G68990 MGP3, male gametophyte defective 3 0.128 -0.173
62 247760_at AT5G59130 [Subtilase family protein] -0.478 0.115
63 248969_at AT5G45310 unknown -0.451 0.028
64 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 -0.321 -0.480
65 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.273 -0.671
66 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] -0.249 -0.092
67 247003_at AT5G67550 unknown -0.242 -0.070
68 245968_at AT5G19810 [Proline-rich extensin-like family protein] -0.231 -0.158
69 261536_at AT1G01790 ATKEA1, K+ EFFLUX ANTIPORTER 1, KEA1, K+ efflux antiporter 1 -0.215 -0.187
70 265789_at AT2G01210 [Leucine-rich repeat protein kinase family protein] -0.215 -0.106
71 267545_at AT2G32690 ATGRP23, GLYCINE-RICH PROTEIN 23, GRP23, glycine-rich protein 23 -0.211 -0.237
72 254545_at AT4G19830 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.194 -0.100
73 263573_at AT2G17150 NLP1, NIN-like protein 1 -0.192 -0.175
74 259912_at AT1G72670 iqd8, IQ-domain 8 -0.191 -0.059
75 247667_at AT5G60150 unknown -0.191 -0.064
76 262290_at AT1G70985 [hydroxyproline-rich glycoprotein family protein] -0.189 -0.721
77 250812_at AT5G04900 NOL, NYC1-like -0.187 -0.117
78 267639_at AT2G42200 AtSPL9, SPL9, squamosa promoter binding protein-like 9 -0.185 -0.010
79 247697_at AT5G59810 ATSBT5.4, SBT5.4 -0.182 -0.046
80 264007_at AT2G21140 ATPRP2, proline-rich protein 2, PRP2, proline-rich protein 2 -0.180 -0.233
81 265072_at AT1G55580 LAS, Lateral Suppressor, SCL18, SCARECROW-LIKE 18 -0.180 -0.040
82 262629_at AT1G06460 ACD31.2, ALPHA-CRYSTALLIN DOMAIN 31.2, ACD32.1, alpha-crystallin domain 32.1 -0.176 0.047
83 257134_at AT3G12870 unknown -0.174 -0.083
84 252989_at AT4G38420 sks9, SKU5 similar 9 -0.173 -0.138
85 246792_at AT5G27290 unknown -0.173 -0.237
86 251919_at AT3G53800 Fes1B, Fes1B -0.172 0.121
87 250942_at AT5G03350 [Legume lectin family protein] -0.171 -0.003
88 263912_at AT2G36390 BE3, BRANCHING ENZYME 3, SBE2.1, starch branching enzyme 2.1 -0.169 -0.104
89 246626_at AT1G48870 [Transducin/WD40 repeat-like superfamily protein] -0.167 -0.054
90 247021_at AT5G67040 unknown -0.167 -0.032
91 267038_at AT2G38480 [Uncharacterised protein family (UPF0497)] -0.166 -0.266
92 263652_at AT1G04330 unknown -0.165 -0.007
93 258282_at AT3G26910 [hydroxyproline-rich glycoprotein family protein] -0.165 0.389
94 265824_at AT2G35650 ATCSLA07, cellulose synthase like, ATCSLA7, CSLA07, CSLA07, cellulose synthase like, CSLA7, CELLULOSE SYNTHASE LIKE A7 -0.164 0.075
95 251719_at AT3G56140 unknown -0.159 -0.203
96 266767_at AT2G46910 [Plastid-lipid associated protein PAP / fibrillin family protein] -0.157 -0.023
97 248066_at AT5G55590 QRT1, QUARTET 1 -0.157 -0.022
98 265411_at AT2G16630 [Pollen Ole e 1 allergen and extensin family protein] -0.157 0.150
99 256032_at AT1G34090 [copia-like retrotransposon family, has a 8.8e-131 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)] -0.153 0.031
100 256655_at AT3G18890 AtTic62, translocon at the inner envelope membrane of chloroplasts 62, Tic62, translocon at the inner envelope membrane of chloroplasts 62 -0.153 -0.221
101 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II -0.153 -0.097
102 255277_at AT4G04890 PDF2, protodermal factor 2 -0.152 -0.285
103 254482_at AT4G20370 TSF, TWIN SISTER OF FT -0.151 -0.063
104 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -0.151 0.478
105 245657_at AT1G56720 [Protein kinase superfamily protein] -0.151 -0.337
106 266291_at AT2G29320 [NAD(P)-binding Rossmann-fold superfamily protein] -0.151 -0.165
107 250861_at AT5G04740 ACR12, ACT domain repeats 12 -0.150 -0.043
108 246970_at AT5G24900 CYP714A2, cytochrome P450, family 714, subfamily A, polypeptide 2, ELA2, EUI-like p450 A2 -0.150 0.025
109 253623_at AT4G30570 [Glucose-1-phosphate adenylyltransferase family protein] -0.149 -0.135
110 247349_at AT5G63820 unknown -0.149 0.064
111 250386_at AT5G11510 AtMYB3R4, myb domain protein 3R4, MYB3R-4, myb domain protein 3r-4 -0.148 -0.077
112 266585_at AT2G14930 [copia-like retrotransposon family, has a 9.9e-255 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.148 -0.008
113 248624_at AT5G48790 unknown -0.148 -0.121
114 267401_at AT2G26210 [Ankyrin repeat family protein] -0.146 0.000
115 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.145 -0.015
116 248695_at AT5G48350 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.145 -0.013
117 262185_at AT1G77950 AGL67, AGAMOUS-like 67 -0.143 -0.022
118 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 -0.143 0.576
119 264583_at AT1G05170 [Galactosyltransferase family protein] -0.142 -0.312
120 252681_at AT3G44350 anac061, NAC domain containing protein 61, NAC061, NAC domain containing protein 61 -0.142 0.046
121 261519_at AT1G71810 [Protein kinase superfamily protein] -0.142 -0.278