4.0:Information of module
scl3
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009809 lignin biosynthetic process BP 1.112e-02
GO:0000086 G2/M transition of mitotic cell cycle BP 1.546e-02
GO:0010389 regulation of G2/M transition of mitotic... BP 1.546e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0032940 secretion by cell BP 1.280e-02
GO:0046903 secretion BP 1.280e-02
GO:0006928 movement of cell or subcellular componen... BP 2.847e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
scl3		 Log2 signal ratio
bri1-116
1 265332_at AT2G18410 unknown 0.186 0.075
2 266292_at AT2G29350 SAG13, senescence-associated gene 13 0.154 0.063
3 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.126 -0.332
4 267215_at AT2G02630 [Cysteine/Histidine-rich C1 domain family protein] 0.115 -0.152
5 256588_at AT3G28790 unknown 0.110 0.082
6 244994_at ATCG01010 NDHF 0.108 0.104
7 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.107 -0.081
8 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.107 -0.267
9 262332_at AT1G64030 ATSRP3, SRP3, serpin 3 0.104 0.024
10 252614_at AT3G45220 [Serine protease inhibitor (SERPIN) family protein] 0.104 0.049
11 265367_at AT2G13270 unknown 0.104 -0.058
12 262740_at AT1G28590 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.103 0.067
13 245579_at AT4G14810 unknown 0.101 -0.017
14 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.098 -0.010
15 245133_at AT2G45310 GAE4, UDP-D-glucuronate 4-epimerase 4 0.096 -0.070
16 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.093 0.120
17 249413_at AT5G39620 AtRABG1, RAB GTPase homolog G1, RABG1, RAB GTPase homolog G1 0.092 -0.038
18 249714_at AT5G35710 [copia-like retrotransposon family, has a 2.5e-48 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)] 0.092 0.007
19 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.090 -0.242
20 254677_at AT4G18490 unknown 0.087 0.060
21 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.085 -0.045
22 265625_at AT2G27240 [Aluminium activated malate transporter family protein] 0.084 0.002
23 248660_at AT5G48650 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] 0.084 0.126
24 252517_at AT3G46340 [Leucine-rich repeat protein kinase family protein] 0.084 0.116
25 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.082 0.069
26 263266_at AT2G16520 unknown 0.081 0.041
27 261198_at AT1G12940 ATNRT2.5, nitrate transporter2.5, NRT2.5, nitrate transporter2.5 0.080 0.091
28 258363_at AT3G14300 ATPME26, A. THALIANA PECTIN METHYLESTERASE 26, ATPMEPCRC, PME26, PECTIN METHYLESTERASE 26 0.076 0.064
29 261866_at AT1G50420 SCL-3, SCARECROW-LIKE 3, SCL3, scarecrow-like 3 -1.037 0.082
30 253832_at AT4G27654 unknown -0.204 0.204
31 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 -0.131 0.020
32 266800_at AT2G22880 [VQ motif-containing protein] -0.123 -0.182
33 256659_at AT3G12020 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.120 0.045
34 264251_at AT1G09190 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.116 -0.029
35 267626_at AT2G42250 CYP712A1, cytochrome P450, family 712, subfamily A, polypeptide 1 -0.112 0.000
36 248008_at AT5G56270 ATWRKY2, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY2, WRKY DNA-binding protein 2 -0.110 0.017
37 250810_at AT5G05090 [Homeodomain-like superfamily protein] -0.109 -0.129
38 251613_at AT3G57960 [Emsy N Terminus (ENT) domain-containing protein] -0.107 0.016
39 255957_at AT1G22160 unknown -0.104 -0.335
40 265094_at AT1G03890 [RmlC-like cupins superfamily protein] -0.100 0.030
41 263959_at AT2G36210 SAUR45, SMALL AUXIN UPREGULATED RNA 45 -0.097 0.036
42 260218_at AT1G74620 [RING/U-box superfamily protein] -0.097 0.008
43 266144_at AT2G12170 unknown -0.095 0.093
44 261246_at AT1G20080 ATSYTB, NTMC2T1.2, NTMC2TYPE1.2, SYT2, synaptotagmin 2, SYTB -0.095 0.036
45 246866_at AT5G25960 unknown -0.094 0.094
46 254441_at AT4G21050 AtDOF4.4, DOF4.4, DNA-binding with One Finger 4.4 -0.094 0.102
47 255765_at AT1G16760 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.093 0.080
48 247501_at AT5G61920 FLL4, FLOWERING LOCUS C EXPRESSOR-LIKE 4, FLX4, FLX LIKE 4 -0.093 -0.015
49 248982_at AT5G45120 [Eukaryotic aspartyl protease family protein] -0.093 0.080
50 249470_at AT5G39350 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.091 0.122
51 250331_at AT5G11820 [Plant self-incompatibility protein S1 family] -0.091 0.082
52 254482_at AT4G20370 TSF, TWIN SISTER OF FT -0.090 0.111
53 246706_at AT5G28130 unknown -0.090 0.023
54 247613_at AT5G60740 ABCG28, ATP-binding cassette G28 -0.089 0.120
55 262261_at AT1G70895 CLE17, CLAVATA3/ESR-RELATED 17 -0.089 0.009